Wall clock time and date at job start Tue Mar 31 2020 12:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.53004 * 109.46807 * 239.99938 * 2 1 3 5 5 C 1.50693 * 109.47117 * 120.00056 * 2 1 3 6 6 O 1.21285 * 120.00291 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99912 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00063 * 179.97438 * 7 5 2 9 9 C 1.53006 * 109.47268 * 180.02562 * 8 7 5 10 10 N 1.46493 * 109.47138 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99933 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99748 * 0.02562 * 11 10 9 13 13 C 1.47649 * 120.00001 * 180.02562 * 11 10 9 14 14 C 1.40016 * 119.89637 * 0.24992 * 13 11 10 15 15 C 1.36306 * 120.10434 * 180.25839 * 14 13 11 16 16 C 1.40885 * 119.89590 * 359.47343 * 15 14 13 17 17 C 1.41111 * 120.10921 * 180.30311 * 16 15 14 18 18 H 1.07994 * 120.00597 * 154.53119 * 17 16 15 19 19 C 1.40227 * 119.99382 * 334.52933 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.05813 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.06034 * 19 17 16 22 22 H 1.48501 * 109.47101 * 89.99684 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99729 * 21 19 17 24 24 H 1.48501 * 109.46949 * 330.00066 * 21 19 17 25 25 C 1.40889 * 119.79071 * 0.27404 * 16 15 14 26 26 C 1.36316 * 119.89281 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46877 * 300.00124 * 1 2 3 28 28 H 1.08999 * 109.47023 * 60.00102 * 1 2 3 29 29 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47134 * 300.00081 * 3 2 1 32 32 H 1.08994 * 109.47136 * 60.00047 * 3 2 1 33 33 H 1.08993 * 109.47098 * 300.00100 * 4 2 1 34 34 H 1.08995 * 109.47153 * 59.99688 * 4 2 1 35 35 H 1.08997 * 109.46784 * 180.02562 * 4 2 1 36 36 H 0.97002 * 120.00057 * 0.02562 * 7 5 2 37 37 H 1.08997 * 109.47372 * 60.00189 * 8 7 5 38 38 H 1.09003 * 109.47168 * 300.00055 * 8 7 5 39 39 H 1.08997 * 109.46964 * 59.99702 * 9 8 7 40 40 H 1.09002 * 109.46546 * 300.00427 * 9 8 7 41 41 H 0.97004 * 120.00572 * 0.02562 * 10 9 8 42 42 H 1.08002 * 119.94001 * 0.03091 * 14 13 11 43 43 H 1.08006 * 120.05292 * 179.74851 * 15 14 13 44 44 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.05483 * 180.02562 * 25 16 15 46 46 H 1.08000 * 119.94946 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1709 2.0290 7 7 3.3574 -0.8340 1.4434 8 6 3.8458 -1.5241 2.6398 9 6 5.3759 -1.5242 2.6398 10 7 5.8642 -2.2138 3.8365 11 6 7.1893 -2.3373 4.0495 12 8 7.9793 -1.8759 3.2487 13 6 7.6815 -3.0327 5.2554 14 6 6.7697 -3.5678 6.1735 15 6 7.2194 -4.2060 7.2907 16 6 8.6040 -4.3368 7.5155 17 6 9.0745 -5.0023 8.6674 18 1 10.0503 -5.4649 8.6631 19 6 8.2748 -5.0629 9.8177 20 7 7.2632 -4.2474 9.9538 21 14 8.6560 -6.3096 11.1555 22 1 9.5921 -5.7091 12.1396 23 1 7.3983 -6.6988 11.8425 24 1 9.2808 -7.5121 10.5480 25 6 9.5176 -3.8014 6.5861 26 6 9.0585 -3.1594 5.4747 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 3.9878 -0.4653 0.8049 37 1 3.4821 -2.5516 2.6406 38 1 3.4829 -1.0096 3.5297 39 1 5.7392 -0.4966 2.6393 40 1 5.7390 -2.0384 1.7499 41 1 5.2339 -2.5822 4.4752 42 1 5.7084 -3.4712 5.9978 43 1 6.5153 -4.6149 8.0004 44 1 6.7098 -4.2896 10.7493 45 1 10.5800 -3.8995 6.7539 46 1 9.7580 -2.7483 4.7619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270377310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:37 Heat of formation + Delta-G solvation = -80.790194 kcal Electronic energy + Delta-G solvation = -25293.824515 eV Core-core repulsion = 21567.975558 eV Total energy + Delta-G solvation = -3725.848957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42670 -39.15349 -37.22915 -36.13998 -35.65955 -33.89771 -33.70697 -30.52808 -29.48478 -28.86115 -27.77688 -27.42552 -25.91183 -23.84123 -22.32746 -21.81045 -20.92557 -19.77507 -19.55567 -17.55564 -17.26566 -16.72595 -16.26489 -16.00907 -15.54110 -15.12960 -15.04680 -14.43423 -14.13202 -14.04721 -14.02866 -13.80509 -13.32346 -13.21385 -12.78311 -12.74799 -12.63508 -12.29848 -12.15718 -12.10921 -11.97922 -11.83279 -11.82596 -11.39241 -11.34803 -11.31498 -11.26853 -10.99850 -10.66388 -10.09479 -9.95053 -9.58603 -9.37865 -9.33747 -9.06204 -8.73026 -7.75004 -7.56747 -7.05249 -4.62950 2.19098 2.41071 2.75406 2.89245 2.93620 2.99444 3.01132 3.72207 3.82348 3.84921 4.26382 4.35394 4.46729 4.53527 4.60380 4.85887 4.97701 5.12980 5.20331 5.29837 5.32413 5.41378 5.48969 5.52294 5.53895 5.65579 5.74466 5.79140 5.81225 5.92990 5.99707 6.04283 6.16500 6.28634 6.74262 6.80197 6.81384 7.00920 7.10357 7.20829 7.40858 7.61047 7.75207 7.83369 7.97152 8.04446 8.14568 8.37393 8.60555 8.72458 8.98714 9.86757 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.002036 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.234704 B =13746.736953 C =14653.148193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.141 4.141 5 C 0.522 3.478 6 O -0.537 6.537 7 N -0.725 5.725 8 C 0.107 3.893 9 C 0.115 3.885 10 N -0.740 5.740 11 C 0.574 3.426 12 O -0.575 6.575 13 C -0.285 4.285 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.772 5.772 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.022 4.022 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.400 0.600 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.287 0.713 45 H 0.098 0.902 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 6.580 -14.691 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.308 3.692 6 O -0.413 6.413 7 N -0.378 5.378 8 C -0.017 4.017 9 C -0.010 4.010 10 N -0.395 5.395 11 C 0.369 3.631 12 O -0.457 6.457 13 C -0.290 4.290 14 C -0.082 4.082 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.148 4.148 20 N -0.395 5.395 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.258 4.258 26 C -0.041 4.041 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.111 6.646 -14.498 19.438 hybrid contribution 0.081 -0.435 0.749 0.870 sum -11.030 6.211 -13.749 18.689 Atomic orbital electron populations 1.21666 0.91832 1.02935 1.02100 1.20830 0.98180 0.96469 0.93519 1.21883 1.01316 0.93672 1.03042 1.21881 1.01311 1.00714 0.95994 1.20594 0.81873 0.79371 0.87335 1.90716 1.55272 1.48324 1.46973 1.45833 1.07350 1.59122 1.25462 1.21492 0.93565 0.98317 0.88356 1.21214 0.91609 0.98331 0.89862 1.45724 1.08105 1.60807 1.24815 1.18586 0.80558 0.77971 0.85936 1.90633 1.55434 1.51337 1.48289 1.18851 0.94280 1.17013 0.98847 1.20479 0.96199 0.97136 0.94375 1.20976 0.96124 1.05070 0.97440 1.17802 0.91734 0.86805 0.91143 1.19846 1.02659 1.28693 0.95682 0.89691 1.26108 0.93701 0.94961 1.00014 1.69735 1.13353 1.29070 1.27318 0.86211 0.79149 0.81130 0.79816 1.19146 1.19777 1.18116 1.20722 0.98132 1.08224 0.98703 1.20359 0.93498 0.94800 0.95423 0.91877 0.91972 0.91882 0.92009 0.91229 0.91919 0.91937 0.91225 0.92013 0.76339 0.90695 0.90679 0.91457 0.91460 0.76438 0.89270 0.86169 0.90185 0.88341 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 7.76 37.16 0.29 -0.70 16 2 C -0.09 -0.65 0.87 -155.66 -0.14 -0.79 16 3 C -0.14 -0.83 8.37 37.16 0.31 -0.52 16 4 C -0.14 -0.82 8.37 37.16 0.31 -0.51 16 5 C 0.52 5.64 6.48 -10.99 -0.07 5.57 16 6 O -0.54 -8.02 15.98 5.55 0.09 -7.93 16 7 N -0.72 -6.76 5.34 -60.29 -0.32 -7.08 16 8 C 0.11 1.17 5.79 -4.04 -0.02 1.15 16 9 C 0.11 1.45 5.79 -4.04 -0.02 1.43 16 10 N -0.74 -11.82 5.50 -61.31 -0.34 -12.15 16 11 C 0.57 11.88 7.76 -12.42 -0.10 11.79 16 12 O -0.57 -13.29 16.32 5.29 0.09 -13.20 16 13 C -0.29 -6.42 5.89 -104.73 -0.62 -7.03 16 14 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 15 C -0.18 -4.29 8.63 -39.28 -0.34 -4.63 16 16 C 0.13 3.25 5.57 -106.80 -0.59 2.65 16 17 C -0.44 -10.88 9.05 -37.75 -0.34 -11.23 16 18 H 0.09 2.00 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 20 N -0.77 -18.40 10.95 55.56 0.61 -17.80 16 21 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 26 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.31 7.57 -51.93 -0.39 -0.08 16 31 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.31 7.56 -51.93 -0.39 -0.09 16 36 H 0.40 2.77 7.31 -40.82 -0.30 2.47 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.40 5.78 6.47 -40.82 -0.26 5.51 16 42 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 43 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 44 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 45 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 46 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -30.52 382.04 -8.73 -39.25 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.03 Total: 10.93 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.55 Total: -9.93 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.05 Total: -37.03 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.18 Total: -21.13 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.52 -8.73 -39.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270377310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.537 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds