Wall clock time and date at job start Tue Mar 31 2020 12:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.53004 * 109.46807 * 239.99938 * 2 1 3 5 5 C 1.50693 * 109.47117 * 120.00056 * 2 1 3 6 6 O 1.21285 * 120.00291 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99912 * 179.97438 * 5 2 1 8 8 C 1.46502 * 120.00063 * 179.97438 * 7 5 2 9 9 C 1.53006 * 109.47268 * 180.02562 * 8 7 5 10 10 N 1.46493 * 109.47138 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99933 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99748 * 0.02562 * 11 10 9 13 13 C 1.47649 * 120.00001 * 180.02562 * 11 10 9 14 14 C 1.40016 * 119.89637 * 0.24992 * 13 11 10 15 15 C 1.36306 * 120.10434 * 180.25839 * 14 13 11 16 16 C 1.40885 * 119.89590 * 359.47343 * 15 14 13 17 17 C 1.41111 * 120.10921 * 180.30311 * 16 15 14 18 18 H 1.07994 * 120.00597 * 154.53119 * 17 16 15 19 19 C 1.40227 * 119.99382 * 334.52933 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.05813 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.06034 * 19 17 16 22 22 H 1.48501 * 109.47101 * 89.99684 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99729 * 21 19 17 24 24 H 1.48501 * 109.46949 * 330.00066 * 21 19 17 25 25 C 1.40889 * 119.79071 * 0.27404 * 16 15 14 26 26 C 1.36316 * 119.89281 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.46877 * 300.00124 * 1 2 3 28 28 H 1.08999 * 109.47023 * 60.00102 * 1 2 3 29 29 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47134 * 300.00081 * 3 2 1 32 32 H 1.08994 * 109.47136 * 60.00047 * 3 2 1 33 33 H 1.08993 * 109.47098 * 300.00100 * 4 2 1 34 34 H 1.08995 * 109.47153 * 59.99688 * 4 2 1 35 35 H 1.08997 * 109.46784 * 180.02562 * 4 2 1 36 36 H 0.97002 * 120.00057 * 0.02562 * 7 5 2 37 37 H 1.08997 * 109.47372 * 60.00189 * 8 7 5 38 38 H 1.09003 * 109.47168 * 300.00055 * 8 7 5 39 39 H 1.08997 * 109.46964 * 59.99702 * 9 8 7 40 40 H 1.09002 * 109.46546 * 300.00427 * 9 8 7 41 41 H 0.97004 * 120.00572 * 0.02562 * 10 9 8 42 42 H 1.08002 * 119.94001 * 0.03091 * 14 13 11 43 43 H 1.08006 * 120.05292 * 179.74851 * 15 14 13 44 44 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.05483 * 180.02562 * 25 16 15 46 46 H 1.08000 * 119.94946 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1709 2.0290 7 7 3.3574 -0.8340 1.4434 8 6 3.8458 -1.5241 2.6398 9 6 5.3759 -1.5242 2.6398 10 7 5.8642 -2.2138 3.8365 11 6 7.1893 -2.3373 4.0495 12 8 7.9793 -1.8759 3.2487 13 6 7.6815 -3.0327 5.2554 14 6 6.7697 -3.5678 6.1735 15 6 7.2194 -4.2060 7.2907 16 6 8.6040 -4.3368 7.5155 17 6 9.0745 -5.0023 8.6674 18 1 10.0503 -5.4649 8.6631 19 6 8.2748 -5.0629 9.8177 20 7 7.2632 -4.2474 9.9538 21 14 8.6560 -6.3096 11.1555 22 1 9.5921 -5.7091 12.1396 23 1 7.3983 -6.6988 11.8425 24 1 9.2808 -7.5121 10.5480 25 6 9.5176 -3.8014 6.5861 26 6 9.0585 -3.1594 5.4747 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 3.9878 -0.4653 0.8049 37 1 3.4821 -2.5516 2.6406 38 1 3.4829 -1.0096 3.5297 39 1 5.7392 -0.4966 2.6393 40 1 5.7390 -2.0384 1.7499 41 1 5.2339 -2.5822 4.4752 42 1 5.7084 -3.4712 5.9978 43 1 6.5153 -4.6149 8.0004 44 1 6.7098 -4.2896 10.7493 45 1 10.5800 -3.8995 6.7539 46 1 9.7580 -2.7483 4.7619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270377310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:36 Heat of formation + Delta-G solvation = -99.890514 kcal Electronic energy + Delta-G solvation = -25294.652767 eV Core-core repulsion = 21567.975558 eV Total energy + Delta-G solvation = -3726.677209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28410 -40.74831 -38.95597 -37.08240 -36.56638 -35.67093 -34.95807 -32.20756 -31.30830 -30.09309 -28.21507 -28.06443 -27.55495 -24.92633 -23.51312 -23.16700 -22.69334 -21.29632 -20.44608 -19.36626 -18.55825 -17.73644 -17.42883 -17.03782 -16.98775 -16.53277 -16.04269 -15.75435 -15.42819 -15.20907 -15.12069 -14.97994 -14.67586 -14.43567 -14.30988 -13.90324 -13.67578 -13.31664 -13.25503 -13.08968 -12.98494 -12.91014 -12.84492 -12.80907 -12.62389 -12.61659 -12.36423 -11.90753 -11.85332 -11.79366 -11.37564 -11.12880 -10.89432 -10.68616 -10.24903 -10.11665 -9.57689 -9.40568 -8.79393 -6.48856 0.42897 1.15008 1.38301 1.42232 1.54276 1.57706 1.81490 2.10420 2.17632 2.64586 2.78102 3.55404 3.64210 3.68515 3.84622 3.91426 4.00048 4.24230 4.25998 4.31111 4.38550 4.44966 4.71152 4.72728 4.79253 4.83019 4.83316 4.92728 4.95334 4.95431 5.01322 5.02770 5.15311 5.20607 5.28300 5.29761 5.34126 5.35895 5.48963 5.58929 5.81396 5.93266 5.99232 6.22618 6.44411 6.53749 6.63494 6.76891 6.88403 7.16654 7.38692 8.15727 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.002036 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.234704 B =13746.736953 C =14653.148193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.584 6.584 7 N -0.714 5.714 8 C 0.117 3.883 9 C 0.120 3.880 10 N -0.725 5.725 11 C 0.576 3.424 12 O -0.601 6.601 13 C -0.293 4.293 14 C -0.055 4.055 15 C -0.198 4.198 16 C 0.100 3.900 17 C -0.473 4.473 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.799 5.799 21 Si 0.987 3.013 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.257 1.257 25 C -0.252 4.252 26 C -0.032 4.032 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.416 0.584 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.409 0.591 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.297 0.703 45 H 0.105 0.895 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 7.031 -15.760 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.305 3.695 6 O -0.464 6.464 7 N -0.367 5.367 8 C -0.007 4.007 9 C -0.004 4.004 10 N -0.378 5.378 11 C 0.370 3.630 12 O -0.485 6.485 13 C -0.298 4.298 14 C -0.074 4.074 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.500 4.500 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.423 5.423 21 Si 0.807 3.193 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.181 1.181 25 C -0.271 4.271 26 C -0.052 4.052 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.246 0.754 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.821 7.123 -15.604 20.832 hybrid contribution 0.250 -0.498 0.988 1.134 sum -11.571 6.625 -14.617 19.784 Atomic orbital electron populations 1.21681 0.92241 1.02072 1.02546 1.20878 0.97864 0.97337 0.92499 1.21902 1.02025 0.92263 1.03514 1.21900 1.02026 1.00072 0.95681 1.21293 0.81682 0.78697 0.87815 1.90695 1.56436 1.50444 1.48808 1.45731 1.07400 1.58469 1.25101 1.21269 0.92198 0.98301 0.88966 1.21313 0.92484 0.98165 0.88473 1.45561 1.06661 1.59805 1.25804 1.18308 0.81877 0.77773 0.85084 1.90618 1.56540 1.52450 1.48876 1.19158 0.94186 1.16705 0.99710 1.20740 0.97932 0.95540 0.93141 1.21008 0.95771 1.06527 0.98414 1.18161 0.92575 0.87599 0.91958 1.20108 1.03469 1.29855 0.96566 0.89609 1.26933 0.93196 0.96327 1.01775 1.69759 1.14047 1.30033 1.28461 0.85116 0.79243 0.78271 0.76680 1.18543 1.18709 1.18064 1.20866 0.98507 1.08704 0.99050 1.20527 0.94390 0.94860 0.95377 0.93469 0.89433 0.93425 0.90901 0.89188 0.93060 0.93017 0.89196 0.90892 0.74654 0.91078 0.91236 0.90990 0.90822 0.75423 0.85894 0.86967 0.89222 0.87712 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.76 71.98 0.56 -1.29 16 2 C -0.08 -1.09 0.87 -52.93 -0.05 -1.14 16 3 C -0.14 -1.28 8.37 71.98 0.60 -0.68 16 4 C -0.14 -1.26 8.37 71.98 0.60 -0.66 16 5 C 0.52 10.66 6.48 87.65 0.57 11.23 16 6 O -0.58 -17.53 15.98 -3.04 -0.05 -17.57 16 7 N -0.71 -12.06 5.34 -463.05 -2.47 -14.53 16 8 C 0.12 2.39 5.79 86.38 0.50 2.89 16 9 C 0.12 2.78 5.79 86.38 0.50 3.28 16 10 N -0.73 -21.85 5.50 -466.16 -2.57 -24.41 16 11 C 0.58 23.17 7.76 86.73 0.67 23.84 16 12 O -0.60 -27.15 16.32 -3.97 -0.06 -27.21 16 13 C -0.29 -13.07 5.89 -19.93 -0.12 -13.19 16 14 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 15 C -0.20 -9.74 8.63 22.47 0.19 -9.55 16 16 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 17 C -0.47 -23.81 9.05 23.46 0.21 -23.59 16 18 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 19 C 0.04 1.70 5.15 85.35 0.44 2.14 16 20 N -0.80 -38.33 10.95 21.87 0.24 -38.09 16 21 Si 0.99 34.84 29.59 68.60 2.03 36.87 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 23 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 24 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 25 C -0.25 -12.37 9.73 22.47 0.22 -12.15 16 26 C -0.03 -1.53 9.52 22.25 0.21 -1.31 16 27 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.07 0.51 7.57 -2.39 -0.02 0.49 16 31 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.50 7.56 -2.39 -0.02 0.48 16 36 H 0.42 4.67 7.31 -92.71 -0.68 3.99 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.41 10.97 6.47 -92.71 -0.60 10.37 16 42 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 43 H 0.11 5.63 6.18 -2.91 -0.02 5.61 16 44 H 0.30 12.66 8.29 -92.70 -0.77 11.89 16 45 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 46 H 0.11 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -67.15 382.04 2.05 -65.10 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.28 Total: 37.12 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 5.21 Total: -17.26 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -4.80 Total: -77.04 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.11 Total: -44.79 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -67.15 2.05 -65.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270377310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.791 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds