Wall clock time and date at job start Tue Mar 31 2020 13:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 C 1.50707 * 109.46928 * 119.99648 * 2 1 3 5 5 O 1.21283 * 119.99905 * 0.02562 * 4 2 1 6 6 N 1.34773 * 119.99729 * 180.02562 * 4 2 1 7 7 C 1.46507 * 119.99767 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47041 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.46784 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00017 * 269.99571 * 9 8 7 11 11 C 1.34782 * 120.00039 * 90.00289 * 9 8 7 12 12 O 1.21585 * 119.99850 * 3.37267 * 11 9 8 13 13 C 1.47638 * 120.00005 * 183.37997 * 11 9 8 14 14 C 1.40013 * 119.89406 * 328.49288 * 13 11 9 15 15 C 1.36322 * 120.10486 * 180.26308 * 14 13 11 16 16 C 1.40879 * 119.89213 * 359.44906 * 15 14 13 17 17 C 1.41109 * 120.10565 * 180.30374 * 16 15 14 18 18 H 1.08001 * 119.99780 * 334.42747 * 17 16 15 19 19 C 1.40225 * 120.00209 * 154.43098 * 17 16 15 20 20 N 1.30641 * 119.99974 * 342.05935 * 19 17 16 21 21 Si 1.86798 * 120.00000 * 162.06820 * 19 17 16 22 22 H 1.48501 * 109.47264 * 94.97805 * 21 19 17 23 23 H 1.48506 * 109.47239 * 214.98006 * 21 19 17 24 24 H 1.48502 * 109.47376 * 334.97743 * 21 19 17 25 25 C 1.40889 * 119.79570 * 0.27807 * 16 15 14 26 26 C 1.36325 * 119.88850 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47745 * 300.00369 * 1 2 3 28 28 H 1.09000 * 109.47056 * 60.00196 * 1 2 3 29 29 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47359 * 239.99658 * 2 1 3 31 31 H 1.09001 * 109.47051 * 59.99206 * 3 2 1 32 32 H 1.08999 * 109.47292 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46935 * 299.99878 * 3 2 1 34 34 H 0.97000 * 120.00150 * 359.97438 * 6 4 2 35 35 H 1.08993 * 109.47239 * 59.99615 * 7 6 4 36 36 H 1.09008 * 109.46729 * 299.99624 * 7 6 4 37 37 H 1.08999 * 109.47247 * 59.99336 * 8 7 6 38 38 H 1.09001 * 109.46683 * 299.99463 * 8 7 6 39 39 H 1.08998 * 109.47465 * 275.19050 * 10 9 8 40 40 H 1.08997 * 109.47112 * 35.19246 * 10 9 8 41 41 H 1.08999 * 109.47263 * 155.19541 * 10 9 8 42 42 H 1.08000 * 119.94827 * 359.97438 * 14 13 11 43 43 H 1.08005 * 120.05226 * 179.73269 * 15 14 13 44 44 H 0.97006 * 120.00253 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.05710 * 180.02562 * 25 16 15 46 46 H 1.07996 * 119.94627 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.2441 -1.1716 2.0287 6 7 3.3573 -0.8330 1.4441 7 6 3.8456 -1.5241 2.6401 8 6 5.3756 -1.5240 2.6402 9 7 5.8639 -2.2145 3.8364 10 6 6.1080 -1.4610 5.0688 11 6 6.0886 -3.5430 3.8031 12 8 5.9451 -4.1580 2.7642 13 6 6.5089 -4.2515 5.0283 14 6 7.2863 -3.5887 5.9858 15 6 7.6813 -4.2404 7.1161 16 6 7.2963 -5.5793 7.3255 17 6 7.6972 -6.2562 8.4969 18 1 8.5911 -5.9486 9.0191 19 6 6.9352 -7.3283 8.9828 20 7 5.7008 -7.4855 8.5851 21 14 7.6850 -8.5316 10.1991 22 1 7.3371 -8.1187 11.5824 23 1 7.1524 -9.8935 9.9403 24 1 9.1616 -8.5394 10.0414 25 6 6.5092 -6.2403 6.3618 26 6 6.1243 -5.5823 5.2317 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6765 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.9877 -0.4644 0.8056 35 1 3.4827 -2.5518 2.6395 36 1 3.4818 -1.0108 3.5303 37 1 5.7389 -0.4963 2.6405 38 1 5.7390 -2.0376 1.7500 39 1 7.1066 -1.0253 5.0366 40 1 5.3677 -0.6663 5.1614 41 1 6.0313 -2.1306 5.9254 42 1 7.5773 -2.5610 5.8265 43 1 8.2845 -3.7297 7.8522 44 1 5.1734 -8.2269 8.9216 45 1 6.2114 -7.2666 6.5182 46 1 5.5206 -6.0879 4.4926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271027668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:41 Heat of formation + Delta-G solvation = -72.980087 kcal Electronic energy + Delta-G solvation = -25837.664223 eV Core-core repulsion = 22112.153938 eV Total energy + Delta-G solvation = -3725.510285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28829 -40.83066 -38.99075 -37.15612 -35.94582 -35.53683 -35.31796 -32.24693 -31.67541 -30.24550 -28.00049 -27.97964 -27.34549 -25.20165 -23.61454 -23.05112 -22.67285 -21.13036 -20.29509 -19.40498 -18.23793 -18.09500 -17.53206 -17.18968 -16.89785 -16.61209 -16.10639 -15.89158 -15.57073 -15.25185 -14.92984 -14.84232 -14.48941 -14.35457 -14.17771 -13.83907 -13.71429 -13.64514 -13.37672 -13.16973 -13.14359 -12.90368 -12.86685 -12.77132 -12.63380 -12.38964 -12.15309 -12.06552 -11.98766 -11.76157 -11.29372 -11.10164 -10.92616 -10.67198 -10.21692 -9.77331 -9.49835 -9.35485 -8.78161 -6.46915 0.49390 1.14082 1.36930 1.41492 1.53898 1.58591 1.75574 2.06391 2.16191 2.46786 2.72633 3.65936 3.67598 3.78861 3.84186 4.00294 4.05825 4.12931 4.23032 4.34312 4.37794 4.47736 4.50830 4.67669 4.74232 4.77105 4.86792 4.89750 4.93768 4.97705 5.00633 5.02969 5.08262 5.19218 5.24664 5.26933 5.33735 5.35456 5.58857 5.62705 5.78305 5.95951 6.01386 6.20913 6.44081 6.49147 6.56796 6.78370 6.90457 7.21088 7.30756 8.17377 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.002250 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.463541 B =12442.473053 C =12928.056084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.506 3.494 5 O -0.594 6.594 6 N -0.711 5.711 7 C 0.112 3.888 8 C 0.114 3.886 9 N -0.613 5.613 10 C 0.059 3.941 11 C 0.570 3.430 12 O -0.601 6.601 13 C -0.289 4.289 14 C -0.049 4.049 15 C -0.246 4.246 16 C 0.099 3.901 17 C -0.475 4.475 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.807 5.807 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.253 1.253 25 C -0.201 4.201 26 C -0.055 4.055 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.121 0.879 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.419 0.581 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.153 0.847 43 H 0.118 0.882 44 H 0.294 0.706 45 H 0.100 0.900 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 17.865 -11.605 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.197 4.197 4 C 0.294 3.706 5 O -0.474 6.474 6 N -0.364 5.364 7 C -0.014 4.014 8 C -0.009 4.009 9 N -0.344 5.344 10 C -0.083 4.083 11 C 0.365 3.635 12 O -0.484 6.484 13 C -0.294 4.294 14 C -0.067 4.067 15 C -0.265 4.265 16 C 0.096 3.904 17 C -0.502 4.502 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.431 5.431 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.177 1.177 25 C -0.221 4.221 26 C -0.075 4.075 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.257 0.743 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.171 0.829 43 H 0.136 0.864 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.663 17.123 -11.530 20.814 hybrid contribution -0.003 -1.164 0.463 1.253 sum -2.667 15.959 -11.067 19.603 Atomic orbital electron populations 1.21638 0.93071 1.01815 1.02664 1.21389 0.97959 0.98604 0.94966 1.21805 1.02236 0.92131 1.03504 1.21610 0.81872 0.78807 0.88330 1.90704 1.56671 1.50691 1.49317 1.45736 1.07378 1.58122 1.25205 1.21492 0.95415 0.95874 0.88580 1.21559 0.91146 0.99566 0.88652 1.47585 1.66051 1.06945 1.13855 1.22629 1.02767 0.96853 0.86006 1.18623 0.75180 0.81885 0.87837 1.90625 1.56179 1.67686 1.33924 1.19106 1.15261 0.96143 0.98857 1.21297 0.94206 0.99365 0.91796 1.20986 1.10229 0.94575 1.00728 1.18153 0.88570 0.91745 0.91908 1.20105 1.09415 1.12751 1.07939 0.89003 1.27006 0.94053 0.98770 0.98697 1.69806 1.08242 1.27749 1.37302 0.85114 0.79881 0.76672 0.77683 1.18235 1.19365 1.17681 1.20877 1.06565 0.99919 0.94710 1.20474 0.97280 0.93792 0.95931 0.93505 0.89152 0.93980 0.86137 0.93102 0.90414 0.89232 0.74280 0.95590 0.91740 0.85542 0.90270 0.89597 0.89383 0.90100 0.82936 0.86387 0.89541 0.88241 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.48 71.98 0.61 -1.54 16 2 C -0.11 -1.52 3.26 -11.54 -0.04 -1.55 16 3 C -0.14 -1.14 9.09 71.98 0.65 -0.49 16 4 C 0.51 11.96 7.15 87.66 0.63 12.59 16 5 O -0.59 -20.77 15.98 -3.04 -0.05 -20.82 16 6 N -0.71 -13.88 5.45 -463.04 -2.52 -16.40 16 7 C 0.11 2.94 6.00 86.38 0.52 3.46 16 8 C 0.11 2.59 5.57 86.38 0.48 3.07 16 9 N -0.61 -18.45 2.87 -850.44 -2.44 -20.89 16 10 C 0.06 1.35 8.79 127.77 1.12 2.48 16 11 C 0.57 23.85 7.43 86.72 0.64 24.49 16 12 O -0.60 -28.96 16.29 -3.98 -0.06 -29.03 16 13 C -0.29 -13.20 5.49 -19.94 -0.11 -13.31 16 14 C -0.05 -1.95 7.35 22.25 0.16 -1.79 16 15 C -0.25 -11.05 9.73 22.47 0.22 -10.83 16 16 C 0.10 5.17 5.56 -21.28 -0.12 5.05 16 17 C -0.47 -24.04 9.04 23.46 0.21 -23.82 16 18 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 19 C 0.03 1.58 5.12 85.35 0.44 2.02 16 20 N -0.81 -41.15 11.02 21.87 0.24 -40.91 16 21 Si 0.99 36.01 29.60 68.60 2.03 38.04 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 25 C -0.20 -10.87 8.63 22.47 0.19 -10.68 16 26 C -0.06 -2.85 9.53 22.25 0.21 -2.64 16 27 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.83 8.10 -2.39 -0.02 0.82 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.38 7.56 -2.39 -0.02 0.36 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.42 4.67 7.89 -92.71 -0.73 3.94 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.13 1.68 8.07 -2.39 -0.02 1.66 16 38 H 0.08 2.00 7.38 -2.39 -0.02 1.99 16 39 H 0.09 1.50 7.42 -2.39 -0.02 1.49 16 40 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 41 H 0.08 2.32 4.72 -2.39 -0.01 2.31 16 42 H 0.15 4.67 4.77 -2.91 -0.01 4.66 16 43 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 44 H 0.29 13.49 8.29 -92.70 -0.77 12.72 16 45 H 0.10 5.62 6.23 -2.91 -0.02 5.60 16 46 H 0.08 4.37 7.94 -2.91 -0.02 4.35 16 Total: -1.00 -75.27 378.16 3.28 -71.99 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.26 Total: 31.50 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.83 Total: -13.48 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -4.73 Total: -78.20 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.11 Total: -49.85 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -75.27 3.28 -71.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271027668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.991 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds