Wall clock time and date at job start Tue Mar 31 2020 13:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 H 1.09005 * 109.87184 * 313.56732 * 3 2 1 5 5 C 1.54323 * 110.01319 * 192.46612 * 3 2 1 6 6 C 1.55152 * 102.94084 * 262.70343 * 5 3 2 7 7 C 1.55131 * 101.48847 * 324.33145 * 6 5 3 8 8 H 1.08993 * 110.49195 * 278.45180 * 7 6 5 9 9 C 1.53000 * 110.34227 * 156.06118 * 7 6 5 10 10 N 1.47023 * 109.88250 * 74.57939 * 3 2 1 11 11 C 1.34781 * 125.64955 * 300.59639 * 10 3 2 12 12 O 1.21586 * 119.99503 * 4.33270 * 11 10 3 13 13 N 1.34769 * 119.99900 * 184.33356 * 11 10 3 14 14 C 1.39946 * 120.00012 * 174.09875 * 13 11 10 15 15 C 1.38964 * 120.03181 * 41.36538 * 14 13 11 16 16 C 1.38163 * 120.06342 * 180.02562 * 15 14 13 17 17 C 1.38172 * 120.13848 * 359.69964 * 16 15 14 18 18 C 1.38909 * 120.06940 * 0.55726 * 17 16 15 19 19 O 1.35745 * 120.03081 * 179.74356 * 18 17 16 20 20 C 1.34838 * 116.99828 * 180.22980 * 19 18 17 21 21 H 1.08004 * 119.99866 * 355.06889 * 20 19 18 22 22 C 1.38651 * 119.99971 * 175.07300 * 20 19 18 23 23 N 1.31554 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99914 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47510 * 270.00134 * 24 22 20 26 26 H 1.48499 * 109.47101 * 149.99670 * 24 22 20 27 27 H 1.48501 * 109.46892 * 29.99919 * 24 22 20 28 28 C 1.38707 * 120.03712 * 221.39126 * 14 13 11 29 29 H 1.08998 * 109.46936 * 150.86940 * 1 2 3 30 30 H 1.08992 * 109.46857 * 270.87175 * 1 2 3 31 31 H 1.08993 * 109.46781 * 30.87216 * 1 2 3 32 32 H 1.09001 * 109.46928 * 240.00200 * 2 1 3 33 33 H 1.09005 * 109.47176 * 120.00187 * 2 1 3 34 34 H 1.09004 * 110.71838 * 21.06811 * 5 3 2 35 35 H 1.08999 * 110.72317 * 144.34203 * 5 3 2 36 36 H 1.09008 * 111.00326 * 82.57211 * 6 5 3 37 37 H 1.08996 * 111.00402 * 206.38152 * 6 5 3 38 38 H 1.09003 * 109.46821 * 270.50669 * 9 7 6 39 39 H 1.09003 * 109.47407 * 30.50549 * 9 7 6 40 40 H 1.08997 * 109.46938 * 150.50867 * 9 7 6 41 41 H 0.96997 * 120.00532 * 354.09747 * 13 11 10 42 42 H 1.08000 * 119.96717 * 0.03076 * 15 14 13 43 43 H 1.07999 * 119.92637 * 179.97438 * 16 15 14 44 44 H 1.07998 * 119.96492 * 180.27687 * 17 16 15 45 45 H 0.96999 * 119.99994 * 0.02562 * 23 22 20 46 46 H 1.07998 * 120.06687 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4975 2.0273 -0.7428 5 6 3.5510 1.4684 -0.3130 6 6 4.1961 1.5579 1.0952 7 6 3.1773 2.4557 1.8453 8 1 3.3557 3.5067 1.6186 9 6 3.2639 2.2129 3.3534 10 7 1.8602 2.0364 1.3328 11 6 0.6849 2.1793 1.9770 12 8 -0.3341 1.7299 1.4893 13 7 0.6394 2.8203 3.1616 14 6 -0.5938 3.0776 3.7711 15 6 -1.5891 2.1078 3.7637 16 6 -2.8070 2.3613 4.3647 17 6 -3.0372 3.5768 4.9802 18 6 -2.0483 4.5522 4.9864 19 8 -2.2772 5.7479 5.5867 20 6 -1.2770 6.6516 5.5523 21 1 -0.3192 6.3812 5.1330 22 6 -1.4782 7.9279 6.0553 23 7 -2.6451 8.2574 6.5657 24 14 -0.0924 9.1795 6.0083 25 1 0.7054 9.0821 7.2570 26 1 -0.6629 10.5455 5.8906 27 1 0.7821 8.9060 4.8396 28 6 -0.8242 4.3010 4.3828 29 1 -0.3633 -0.8977 -0.5003 30 1 -0.3633 0.0156 1.0275 31 1 -0.3632 0.8820 -0.5273 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8557 0.5525 -0.8194 35 1 3.8062 2.3437 -0.9103 36 1 4.2668 0.5724 1.5558 37 1 5.1747 2.0354 1.0470 38 1 2.5816 1.4097 3.6318 39 1 4.2832 1.9320 3.6184 40 1 2.9883 3.1240 3.8844 41 1 1.4614 3.1033 3.5919 42 1 -1.4103 1.1550 3.2877 43 1 -3.5791 1.6062 4.3572 44 1 -3.9887 3.7703 5.4530 45 1 -3.3646 7.6073 6.5905 46 1 -0.0522 5.0563 4.3898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271513624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:21 Heat of formation + Delta-G solvation = -30.263347 kcal Electronic energy + Delta-G solvation = -27432.872351 eV Core-core repulsion = 23709.214403 eV Total energy + Delta-G solvation = -3723.657948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11644 -40.83799 -39.32092 -38.00950 -36.30960 -34.43945 -34.08034 -32.65203 -31.31523 -30.90817 -29.92939 -26.94644 -26.79058 -24.67074 -23.67763 -23.37693 -22.73403 -21.68254 -20.89356 -20.12483 -19.24018 -18.69705 -17.35746 -17.03816 -16.80400 -16.72963 -16.27682 -15.96382 -15.66249 -15.52621 -15.34924 -14.95014 -14.70380 -14.49194 -14.30597 -14.08574 -14.01438 -13.34455 -13.14907 -13.07246 -12.96603 -12.78166 -12.69355 -12.51577 -12.39114 -12.32088 -11.93919 -11.93776 -11.76652 -11.57883 -11.45245 -11.35539 -11.00799 -10.73251 -10.69893 -9.66168 -9.38808 -8.95802 -8.92598 -6.25371 0.37073 0.63606 1.47299 1.47998 1.61575 1.76540 2.05341 2.34837 2.82389 2.84632 3.11087 3.30932 3.55186 3.61096 3.91602 3.94390 4.04406 4.19219 4.21496 4.25667 4.36626 4.40980 4.42698 4.50230 4.59227 4.65212 4.67483 4.81685 4.89220 4.92799 4.97132 5.02461 5.07661 5.11820 5.19422 5.21320 5.28146 5.33535 5.37933 5.44947 5.54766 5.58464 5.66034 5.74939 6.00051 6.09210 6.27377 6.84300 6.85942 7.51269 7.60829 8.50398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003637 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.992453 B = 7697.456705 C = 9052.178727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.120 4.120 6 C -0.114 4.114 7 C 0.112 3.888 8 H 0.082 0.918 9 C -0.176 4.176 10 N -0.625 5.625 11 C 0.706 3.294 12 O -0.585 6.585 13 N -0.685 5.685 14 C 0.203 3.797 15 C -0.188 4.188 16 C -0.052 4.052 17 C -0.213 4.213 18 C 0.137 3.863 19 O -0.246 6.246 20 C -0.488 4.488 21 H 0.090 0.910 22 C -0.043 4.043 23 N -0.917 5.917 24 Si 1.146 2.854 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.260 1.260 28 C -0.259 4.259 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.412 0.588 42 H 0.131 0.869 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.261 0.739 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.832 -16.058 -12.604 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.042 3.958 4 H 0.075 0.925 5 C -0.158 4.158 6 C -0.152 4.152 7 C 0.009 3.991 8 H 0.100 0.900 9 C -0.233 4.233 10 N -0.363 5.363 11 C 0.410 3.590 12 O -0.463 6.463 13 N -0.340 5.340 14 C 0.107 3.893 15 C -0.208 4.208 16 C -0.071 4.071 17 C -0.233 4.233 18 C 0.086 3.914 19 O -0.153 6.153 20 C -0.564 4.564 21 H 0.108 0.892 22 C -0.239 4.239 23 N -0.551 5.551 24 Si 0.962 3.038 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.184 1.184 28 C -0.281 4.281 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.257 0.743 42 H 0.148 0.852 43 H 0.174 0.826 44 H 0.140 0.860 45 H 0.070 0.930 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.300 -14.719 -12.456 26.583 hybrid contribution -0.854 -1.146 0.068 1.430 sum 17.446 -15.864 -12.388 26.636 Atomic orbital electron populations 1.21998 0.96129 0.99012 1.02185 1.21888 0.95803 0.95593 1.02606 1.21795 0.98247 0.93663 0.82067 0.92520 1.22745 0.90404 1.04767 0.97874 1.22870 0.97985 1.00137 0.94219 1.22361 0.82209 0.99846 0.94666 0.90033 1.22373 1.05002 1.01564 0.94404 1.47897 1.04808 1.63899 1.19710 1.15661 0.84012 0.79214 0.80160 1.90976 1.34301 1.52879 1.68187 1.43264 1.08008 1.61213 1.21530 1.17233 0.86538 0.91781 0.93709 1.20921 0.94489 0.99636 1.05799 1.20947 0.96887 0.95207 0.94014 1.20478 0.99246 0.94342 1.09188 1.19448 0.93930 0.86459 0.91538 1.83679 1.42133 1.21627 1.67894 1.22592 0.93167 0.94272 1.46364 0.89216 1.28379 1.04288 0.98035 0.93215 1.70674 1.03805 1.38085 1.42583 0.82564 0.70301 0.72488 0.78443 1.18587 1.19895 1.18430 1.20866 0.99039 0.97540 1.10615 0.94329 0.92521 0.94683 0.89084 0.92252 0.87642 0.89476 0.89832 0.87193 0.92797 0.87545 0.92203 0.74347 0.85166 0.82639 0.86019 0.93040 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.17 71.98 0.59 -2.93 16 2 C -0.12 -2.24 5.45 30.60 0.17 -2.07 16 3 C 0.15 2.67 3.08 45.34 0.14 2.81 16 4 H 0.06 1.24 7.79 -2.38 -0.02 1.22 16 5 C -0.12 -1.14 6.49 31.78 0.21 -0.93 16 6 C -0.11 -0.96 6.35 32.06 0.20 -0.75 16 7 C 0.11 1.68 3.69 45.55 0.17 1.85 16 8 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 9 C -0.18 -2.55 7.92 71.98 0.57 -1.98 16 10 N -0.63 -14.12 2.97 -781.87 -2.32 -16.44 16 11 C 0.71 22.17 7.59 179.06 1.36 23.53 16 12 O -0.58 -21.57 8.96 -3.99 -0.04 -21.61 16 13 N -0.69 -22.03 4.77 -317.23 -1.51 -23.55 16 14 C 0.20 8.03 6.18 38.13 0.24 8.26 16 15 C -0.19 -7.15 8.68 22.43 0.19 -6.96 16 16 C -0.05 -1.93 10.03 22.24 0.22 -1.71 16 17 C -0.21 -9.37 9.99 22.41 0.22 -9.14 16 18 C 0.14 7.01 6.65 22.56 0.15 7.16 16 19 O -0.25 -14.78 9.16 -22.76 -0.21 -14.99 16 20 C -0.49 -28.71 9.48 67.92 0.64 -28.07 16 21 H 0.09 4.91 5.20 -2.91 -0.02 4.90 16 22 C -0.04 -2.47 5.49 84.83 0.47 -2.00 16 23 N -0.92 -57.60 13.70 21.61 0.30 -57.31 16 24 Si 1.15 47.95 29.92 68.60 2.05 50.00 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 28 C -0.26 -11.91 9.08 22.51 0.20 -11.70 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.80 5.71 -6.71 -0.04 1.77 16 31 H 0.03 1.04 6.94 -2.39 -0.02 1.02 16 32 H 0.09 1.20 7.89 -2.39 -0.02 1.18 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.11 0.61 7.67 -2.38 -0.02 0.60 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.67 8.07 -2.38 -0.02 0.65 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.05 1.00 7.21 -2.39 -0.02 0.98 16 39 H 0.11 0.96 7.89 -2.39 -0.02 0.94 16 40 H 0.06 0.95 6.48 -2.39 -0.02 0.93 16 41 H 0.41 11.16 4.53 -92.71 -0.42 10.74 16 42 H 0.13 4.78 6.66 -2.91 -0.02 4.76 16 43 H 0.16 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 45 H 0.26 17.12 7.97 -92.71 -0.74 16.38 16 46 H 0.12 5.67 5.62 -2.91 -0.02 5.65 16 Total: -1.00 -76.50 357.58 4.60 -71.90 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.59 Total: 36.63 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 5.74 Total: -24.64 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.54 Total: -97.29 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.24 Total: -36.60 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.00 kcal Total: -76.50 4.60 -71.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271513624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.637 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds