Wall clock time and date at job start Tue Mar 31 2020 13:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46880 * 2 1 4 4 H 1.08998 * 109.87503 * 41.45965 * 3 2 1 5 5 C 1.54322 * 109.88230 * 162.47796 * 3 2 1 6 6 C 1.55156 * 102.93999 * 141.60492 * 5 3 2 7 7 C 1.54904 * 101.58717 * 324.49881 * 6 5 3 8 8 H 1.09004 * 110.36739 * 278.06311 * 7 6 5 9 9 C 1.53000 * 110.37159 * 155.84518 * 7 6 5 10 10 N 1.47020 * 109.87836 * 280.28439 * 3 2 1 11 11 C 1.34780 * 125.64906 * 61.59861 * 10 3 2 12 12 O 1.21586 * 119.99936 * 356.93767 * 11 10 3 13 13 N 1.34777 * 120.00087 * 176.93799 * 11 10 3 14 14 C 1.39938 * 119.99919 * 186.61522 * 13 11 10 15 15 C 1.38956 * 120.03930 * 36.20400 * 14 13 11 16 16 C 1.38159 * 120.07382 * 179.97438 * 15 14 13 17 17 C 1.38169 * 120.13129 * 0.02562 * 16 15 14 18 18 C 1.38900 * 120.07696 * 359.97438 * 17 16 15 19 19 O 1.35749 * 120.03884 * 180.02562 * 18 17 16 20 20 C 1.34839 * 117.00050 * 185.86143 * 19 18 17 21 21 H 1.08001 * 119.99579 * 4.94143 * 20 19 18 22 22 C 1.38649 * 119.99948 * 184.93786 * 20 19 18 23 23 N 1.31555 * 120.00033 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99899 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47005 * 89.99920 * 24 22 20 26 26 H 1.48497 * 109.47241 * 209.99826 * 24 22 20 27 27 H 1.48500 * 109.47248 * 330.00081 * 24 22 20 28 28 C 1.38708 * 120.03371 * 215.93028 * 14 13 11 29 29 H 1.08999 * 109.47545 * 321.49807 * 1 2 3 30 30 H 1.09006 * 109.47178 * 201.49570 * 1 2 3 31 31 H 1.09004 * 109.46881 * 81.50052 * 1 2 3 32 32 H 1.09002 * 109.47430 * 119.99477 * 2 1 3 33 33 H 1.08996 * 109.47578 * 239.99543 * 2 1 3 34 34 H 1.08996 * 110.72074 * 259.97040 * 5 3 2 35 35 H 1.08999 * 110.71820 * 23.24592 * 5 3 2 36 36 H 1.09001 * 111.00036 * 82.57551 * 6 5 3 37 37 H 1.09000 * 111.00398 * 206.38188 * 6 5 3 38 38 H 1.09000 * 109.46887 * 36.39720 * 9 7 6 39 39 H 1.08998 * 109.47366 * 156.40288 * 9 7 6 40 40 H 1.08998 * 109.46900 * 276.40603 * 9 7 6 41 41 H 0.96999 * 119.99804 * 6.61087 * 13 11 10 42 42 H 1.08007 * 119.96505 * 0.02562 * 15 14 13 43 43 H 1.07995 * 119.93726 * 180.02562 * 16 15 14 44 44 H 1.08010 * 119.96023 * 180.02562 * 17 16 15 45 45 H 0.97001 * 119.99768 * 179.97438 * 23 22 20 46 46 H 1.07993 * 120.06770 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4391 2.0480 0.6787 5 6 3.5196 1.4762 0.4369 6 6 4.1284 2.5684 -0.4816 7 6 3.3384 2.3459 -1.7954 8 1 3.7769 1.5286 -2.3680 9 6 3.3192 3.6287 -2.6290 10 7 1.9738 1.9962 -1.3604 11 6 0.8517 2.1566 -2.0895 12 8 -0.2177 1.7797 -1.6504 13 7 0.9149 2.7346 -3.3054 14 6 -0.2623 3.0271 -4.0031 15 6 -1.3922 3.4509 -3.3141 16 6 -2.5547 3.7404 -4.0023 17 6 -2.5979 3.6092 -5.3771 18 6 -1.4719 3.1861 -6.0717 19 8 -1.5150 3.0580 -7.4224 20 6 -0.4296 2.5283 -8.0220 21 1 0.3889 2.1547 -7.4246 22 6 -0.3644 2.4632 -9.4054 23 7 0.6948 1.9470 -9.9905 24 14 -1.7799 3.1100 -10.4386 25 1 -1.5545 4.5458 -10.7435 26 1 -1.8589 2.3412 -11.7066 27 1 -3.0515 2.9573 -9.6870 28 6 -0.3009 2.8999 -5.3838 29 1 -0.3634 0.8042 0.6397 30 1 -0.3634 -0.9562 0.3766 31 1 -0.3633 0.1519 -1.0164 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.6058 1.7619 1.4852 35 1 3.9964 0.5124 0.2583 36 1 3.9445 3.5644 -0.0790 37 1 5.1948 2.4014 -0.6333 38 1 4.2742 4.1436 -2.5254 39 1 3.1530 3.3786 -3.6769 40 1 2.5166 4.2777 -2.2787 41 1 1.7764 2.9479 -3.6968 42 1 -1.3614 3.5548 -2.2395 43 1 -3.4314 4.0699 -3.4647 44 1 -3.5080 3.8367 -5.9123 45 1 0.7402 1.9011 -10.9583 46 1 0.5771 2.5747 -5.9219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271513627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:24 Heat of formation + Delta-G solvation = -22.086110 kcal Electronic energy + Delta-G solvation = -27339.102691 eV Core-core repulsion = 23615.799334 eV Total energy + Delta-G solvation = -3723.303357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10193 -40.81635 -39.30441 -37.97991 -36.29358 -34.52287 -34.22757 -32.67330 -31.28976 -30.96397 -30.02454 -27.20710 -26.84389 -24.67643 -23.56664 -23.28449 -22.56281 -21.90954 -20.74651 -19.74707 -19.35242 -18.51090 -17.75543 -17.14482 -16.87903 -16.58451 -16.17544 -15.89074 -15.65565 -15.35254 -15.23349 -14.81381 -14.77085 -14.50337 -14.18724 -14.13849 -13.90990 -13.77249 -13.52210 -13.33810 -12.95533 -12.80255 -12.69926 -12.66881 -12.44359 -12.35048 -12.06554 -11.92605 -11.66193 -11.61141 -11.51134 -11.45127 -11.23926 -10.91449 -10.64450 -9.65506 -9.35035 -8.87083 -8.50104 -6.22989 0.42800 0.65903 1.32738 1.36670 1.50073 1.53778 2.05213 2.29080 2.77988 2.84658 3.08071 3.13582 3.54199 3.63334 3.87144 3.94736 4.10606 4.19613 4.20230 4.30445 4.36780 4.42591 4.46147 4.53915 4.60093 4.64874 4.68448 4.71469 4.90740 4.94039 4.97481 5.03022 5.05876 5.12412 5.17124 5.25910 5.31885 5.35840 5.41137 5.47422 5.55715 5.62029 5.74472 5.74862 5.92191 6.05980 6.24124 6.83841 6.84348 7.51526 7.57594 8.61404 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.003329 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.532220 B = 8410.040716 C = 9142.119287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.148 3.852 4 H 0.068 0.932 5 C -0.119 4.119 6 C -0.116 4.116 7 C 0.112 3.888 8 H 0.080 0.920 9 C -0.174 4.174 10 N -0.625 5.625 11 C 0.709 3.291 12 O -0.585 6.585 13 N -0.687 5.687 14 C 0.202 3.798 15 C -0.188 4.188 16 C -0.050 4.050 17 C -0.204 4.204 18 C 0.143 3.857 19 O -0.239 6.239 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.268 1.268 27 H -0.262 1.262 28 C -0.260 4.260 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.412 0.588 42 H 0.127 0.873 43 H 0.160 0.840 44 H 0.135 0.865 45 H 0.285 0.715 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 2.371 22.036 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.045 3.955 4 H 0.086 0.914 5 C -0.157 4.157 6 C -0.153 4.153 7 C 0.010 3.990 8 H 0.098 0.902 9 C -0.231 4.231 10 N -0.363 5.363 11 C 0.412 3.588 12 O -0.464 6.464 13 N -0.343 5.343 14 C 0.106 3.894 15 C -0.209 4.209 16 C -0.069 4.069 17 C -0.223 4.223 18 C 0.093 3.907 19 O -0.146 6.146 20 C -0.476 4.476 21 H 0.096 0.904 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.792 3.208 25 H -0.189 1.189 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.282 4.282 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.258 0.742 42 H 0.145 0.855 43 H 0.177 0.823 44 H 0.153 0.847 45 H 0.094 0.906 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.249 2.103 22.016 23.274 hybrid contribution 0.148 -0.098 -1.229 1.242 sum 7.398 2.005 20.787 22.155 Atomic orbital electron populations 1.22099 0.96199 0.99484 1.03093 1.21904 0.96021 0.96139 1.02208 1.21797 0.98817 0.93695 0.81198 0.91440 1.22753 0.91122 1.00562 1.01263 1.22825 1.00450 0.99904 0.92167 1.22290 0.81681 0.97059 0.98016 0.90194 1.22387 1.04813 0.97486 0.98459 1.47913 1.05186 1.66199 1.16986 1.15638 0.84258 0.78631 0.80264 1.90861 1.29002 1.54780 1.71803 1.43533 1.08888 1.63775 1.18090 1.17290 0.87343 0.95406 0.89315 1.20846 0.93301 1.06793 0.99978 1.20964 0.97932 0.95922 0.92056 1.20516 0.97133 1.10041 0.94642 1.19319 0.94126 0.94208 0.83041 1.83551 1.40318 1.74102 1.16660 1.20666 0.96401 1.38959 0.91561 0.90393 1.25253 1.00108 0.96472 0.96756 1.69724 1.29570 1.45256 1.11693 0.85229 0.79144 0.78871 0.77582 1.18925 1.19291 1.18637 1.20855 0.99643 1.13991 0.93672 0.93777 0.94059 0.92173 0.88944 0.93305 0.87679 0.89277 0.89839 0.87174 0.87554 0.92864 0.92387 0.74244 0.85512 0.82274 0.84711 0.90566 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.45 71.98 0.61 -3.47 16 2 C -0.12 -2.56 5.37 30.60 0.16 -2.39 16 3 C 0.15 2.76 3.08 45.34 0.14 2.90 16 4 H 0.07 1.37 7.72 -2.39 -0.02 1.35 16 5 C -0.12 -1.18 6.41 31.78 0.20 -0.97 16 6 C -0.12 -1.08 6.39 31.98 0.20 -0.87 16 7 C 0.11 1.83 3.71 45.46 0.17 2.00 16 8 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 9 C -0.17 -2.87 7.87 71.98 0.57 -2.31 16 10 N -0.62 -14.57 2.95 -782.28 -2.31 -16.88 16 11 C 0.71 22.76 7.65 179.05 1.37 24.13 16 12 O -0.59 -21.91 9.88 -3.99 -0.04 -21.95 16 13 N -0.69 -22.90 4.63 -317.23 -1.47 -24.37 16 14 C 0.20 8.00 6.21 38.13 0.24 8.24 16 15 C -0.19 -6.96 8.65 22.42 0.19 -6.76 16 16 C -0.05 -1.73 10.03 22.23 0.22 -1.50 16 17 C -0.20 -8.14 9.99 22.41 0.22 -7.91 16 18 C 0.14 6.89 6.64 22.56 0.15 7.04 16 19 O -0.24 -13.12 8.58 -22.82 -0.20 -13.31 16 20 C -0.40 -23.67 9.90 67.92 0.67 -23.00 16 21 H 0.08 4.85 5.53 -2.91 -0.02 4.83 16 22 C 0.01 0.73 5.49 84.83 0.47 1.20 16 23 N -0.92 -54.85 13.96 21.61 0.30 -54.55 16 24 Si 0.97 45.44 28.62 68.60 1.96 47.40 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 28 C -0.26 -11.95 9.05 22.51 0.20 -11.75 16 29 H 0.04 1.20 7.63 -2.39 -0.02 1.18 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 2.11 5.17 -13.45 -0.07 2.04 16 32 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.75 7.85 -2.39 -0.02 0.73 16 36 H 0.08 0.75 8.06 -2.39 -0.02 0.73 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.11 1.16 7.97 -2.39 -0.02 1.14 16 39 H 0.05 1.03 6.08 -2.39 -0.01 1.01 16 40 H 0.06 1.15 7.46 -2.39 -0.02 1.13 16 41 H 0.41 12.05 4.37 -92.71 -0.41 11.65 16 42 H 0.13 4.54 6.67 -2.91 -0.02 4.52 16 43 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.11 5.60 5.71 -2.91 -0.02 5.58 16 Total: -1.00 -72.00 358.21 4.58 -67.42 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.53 Total: 31.67 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 5.79 Total: -15.43 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.47 Total: -95.80 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.24 Total: -35.26 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.96 Total: 47.40 kcal Total: -72.00 4.58 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271513627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.331 kcal (2) G-P(sol) polarization free energy of solvation -71.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds