Wall clock time and date at job start Tue Mar 31 2020 13:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.09003 * 109.87230 * 306.45862 * 3 2 1 5 5 C 1.54367 * 110.03044 * 67.52090 * 3 2 1 6 6 C 1.55150 * 102.92200 * 141.64835 * 5 3 2 7 7 C 1.54914 * 101.61483 * 324.54880 * 6 5 3 8 8 H 1.09004 * 110.36231 * 155.82690 * 7 6 5 9 9 C 1.53003 * 110.36557 * 278.03743 * 7 6 5 10 10 N 1.47014 * 109.88183 * 185.44110 * 3 2 1 11 11 C 1.34782 * 125.65262 * 61.45137 * 10 3 2 12 12 O 1.21585 * 119.99536 * 355.09780 * 11 10 3 13 13 N 1.34769 * 119.99999 * 175.10601 * 11 10 3 14 14 C 1.39951 * 119.99810 * 185.20977 * 13 11 10 15 15 C 1.38958 * 120.03196 * 34.49819 * 14 13 11 16 16 C 1.38157 * 120.06400 * 179.97438 * 15 14 13 17 17 C 1.38166 * 120.14217 * 0.02562 * 16 15 14 18 18 C 1.38916 * 120.06811 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.03282 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99917 * 174.54606 * 19 18 17 21 21 H 1.08005 * 119.99843 * 5.06790 * 20 19 18 22 22 C 1.38641 * 120.00147 * 185.06680 * 20 19 18 23 23 N 1.31561 * 120.00311 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46927 * 89.99822 * 24 22 20 26 26 H 1.48497 * 109.47608 * 209.99880 * 24 22 20 27 27 H 1.48501 * 109.47384 * 329.99897 * 24 22 20 28 28 C 1.38706 * 120.03567 * 214.22430 * 14 13 11 29 29 H 1.08995 * 109.47488 * 184.96272 * 1 2 3 30 30 H 1.08998 * 109.47237 * 304.96698 * 1 2 3 31 31 H 1.09007 * 109.47042 * 64.96042 * 1 2 3 32 32 H 1.08996 * 109.46823 * 239.99931 * 2 1 3 33 33 H 1.08995 * 109.47029 * 120.00128 * 2 1 3 34 34 H 1.08996 * 110.70522 * 23.30225 * 5 3 2 35 35 H 1.09004 * 110.75544 * 260.01976 * 5 3 2 36 36 H 1.09002 * 111.00613 * 206.45064 * 6 5 3 37 37 H 1.09004 * 111.00416 * 82.64248 * 6 5 3 38 38 H 1.09002 * 109.46475 * 58.54904 * 9 7 6 39 39 H 1.08994 * 109.47182 * 178.54541 * 9 7 6 40 40 H 1.08996 * 109.47095 * 298.54882 * 9 7 6 41 41 H 0.96999 * 120.00470 * 5.20996 * 13 11 10 42 42 H 1.07992 * 119.97003 * 359.95714 * 15 14 13 43 43 H 1.08003 * 119.93404 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.97213 * 179.97438 * 17 16 15 45 45 H 0.96994 * 120.00174 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.06808 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5893 1.9949 -0.8245 5 6 1.6936 2.1258 1.3401 6 6 2.9509 2.9891 1.6247 7 6 4.0811 2.0865 1.0697 8 1 4.9498 2.6880 0.8020 9 6 4.4677 1.0233 2.0998 10 7 3.5043 1.4551 -0.1311 11 6 4.2038 0.9691 -1.1757 12 8 3.6280 0.3872 -2.0747 13 7 5.5412 1.1281 -1.2236 14 6 6.2540 0.7212 -2.3572 15 6 5.6804 0.8358 -3.6177 16 6 6.3837 0.4349 -4.7372 17 6 7.6586 -0.0814 -4.6075 18 6 8.2372 -0.1995 -3.3501 19 8 9.4897 -0.7074 -3.2235 20 6 10.0355 -0.6901 -1.9907 21 1 9.4496 -0.3606 -1.1453 22 6 11.3488 -1.0954 -1.8082 23 7 12.0623 -1.4972 -2.8378 24 14 12.1051 -1.0708 -0.1004 25 1 11.8707 -2.3782 0.5637 26 1 13.5657 -0.8257 -0.2092 27 1 11.4803 0.0112 0.7023 28 6 7.5360 0.2086 -2.2242 29 1 -0.3634 -1.0237 0.0889 30 1 -0.3633 0.5889 0.8421 31 1 -0.3633 0.4350 -0.9311 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5495 1.3836 2.1252 35 1 0.8094 2.7548 1.2357 36 1 3.0752 3.1576 2.6944 37 1 2.9058 3.9350 1.0850 38 1 3.5928 0.4218 2.3469 39 1 5.2447 0.3812 1.6851 40 1 4.8408 1.5094 3.0012 41 1 6.0098 1.5244 -0.4725 42 1 4.6838 1.2384 -3.7222 43 1 5.9356 0.5245 -5.7158 44 1 8.2058 -0.3944 -5.4845 45 1 12.9810 -1.7811 -2.7101 46 1 7.9854 0.1223 -1.2460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271513630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:28 Heat of formation + Delta-G solvation = -30.895816 kcal Electronic energy + Delta-G solvation = -26977.107808 eV Core-core repulsion = 23253.422433 eV Total energy + Delta-G solvation = -3723.685374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84124 -39.18467 -38.07921 -36.28308 -34.62229 -33.59286 -32.24119 -31.76671 -30.07891 -29.20570 -28.35405 -26.23243 -25.28590 -23.77079 -22.64736 -21.76812 -21.44245 -20.50363 -19.44403 -18.44112 -17.83223 -17.15230 -16.19685 -15.48433 -15.25482 -14.96470 -14.89033 -14.67252 -14.24825 -14.08637 -13.97152 -13.65351 -13.51482 -13.21818 -13.00271 -12.81815 -12.69513 -12.60697 -12.32590 -12.16097 -11.73010 -11.66623 -11.52137 -11.34135 -11.17711 -11.06416 -10.96980 -10.87337 -10.73652 -10.62025 -10.44174 -9.92527 -9.55335 -9.42224 -8.79159 -8.73314 -7.66053 -7.09669 -6.42738 -4.02464 2.09895 2.43276 2.58809 3.12299 3.12340 3.17393 3.34658 3.88199 3.97335 4.17544 4.35242 4.55487 4.65381 4.73302 4.92351 4.98645 5.06958 5.12256 5.17258 5.21010 5.31965 5.33092 5.44009 5.46271 5.57980 5.62019 5.64794 5.72963 5.83802 5.87145 5.97625 6.03102 6.04382 6.13063 6.14304 6.28438 6.33523 6.40837 6.65756 6.91573 7.04962 7.15199 7.31154 7.38914 7.46712 7.86789 8.01513 8.03826 8.69749 9.02730 9.73956 10.75505 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003354 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.741162 B = 8347.110451 C = 9599.414722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.159 3.841 4 H 0.073 0.927 5 C -0.126 4.126 6 C -0.127 4.127 7 C 0.121 3.879 8 H 0.081 0.919 9 C -0.165 4.165 10 N -0.630 5.630 11 C 0.723 3.277 12 O -0.566 6.566 13 N -0.681 5.681 14 C 0.200 3.800 15 C -0.203 4.203 16 C -0.063 4.063 17 C -0.202 4.202 18 C 0.170 3.830 19 O -0.177 6.177 20 C -0.391 4.391 21 H 0.090 0.910 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.258 4.258 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.269 0.731 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 8.921 11.320 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.055 3.945 4 H 0.091 0.909 5 C -0.164 4.164 6 C -0.165 4.165 7 C 0.017 3.983 8 H 0.099 0.901 9 C -0.223 4.223 10 N -0.368 5.368 11 C 0.426 3.574 12 O -0.442 6.442 13 N -0.328 5.328 14 C 0.106 3.894 15 C -0.224 4.224 16 C -0.081 4.081 17 C -0.222 4.222 18 C 0.116 3.884 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.107 0.893 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.764 3.236 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.193 1.193 28 C -0.280 4.280 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.006 8.297 10.395 23.197 hybrid contribution 0.692 0.145 1.418 1.584 sum -18.314 8.441 11.813 23.371 Atomic orbital electron populations 1.21716 0.95391 1.01718 1.01640 1.21970 0.95822 0.96397 1.03553 1.21420 0.78994 0.96547 0.97521 0.90887 1.22746 0.98122 0.99064 0.96511 1.22777 0.94035 0.97983 1.01671 1.21876 0.96976 0.93742 0.85679 0.90133 1.22210 1.02208 0.99195 0.98725 1.47762 1.06798 1.63662 1.18611 1.15380 0.81274 0.79230 0.81552 1.90930 1.68917 1.46018 1.38316 1.42643 1.05619 1.64925 1.19623 1.17182 0.90816 0.96348 0.85051 1.20546 1.01231 1.10005 0.90665 1.20519 0.93230 0.96938 0.97462 1.20239 0.96783 1.09813 0.95383 1.19047 0.86218 0.90582 0.92576 1.84008 1.23044 1.68662 1.32354 1.21264 0.96087 1.46260 0.83170 0.89297 1.25259 0.95213 0.96511 0.99497 1.70037 1.09430 1.40444 1.29933 0.85741 0.78545 0.78881 0.80391 1.19940 1.20258 1.19312 1.20765 0.95943 1.11430 0.99862 0.92648 0.92831 0.92646 0.89809 0.92166 0.90337 0.90046 0.89744 0.90466 0.91916 0.92067 0.91289 0.76458 0.86353 0.86673 0.86423 0.92062 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.83 37.16 0.37 -0.85 16 2 C -0.14 -1.49 5.41 -26.73 -0.14 -1.64 16 3 C 0.16 1.62 2.91 -66.93 -0.20 1.42 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.13 -0.85 5.19 -24.88 -0.13 -0.98 16 6 C -0.13 -0.81 6.56 -24.58 -0.16 -0.97 16 7 C 0.12 1.07 3.07 -66.42 -0.20 0.86 16 8 H 0.08 0.68 7.20 -51.93 -0.37 0.31 16 9 C -0.16 -1.38 9.49 37.16 0.35 -1.03 16 10 N -0.63 -7.58 2.72 -161.21 -0.44 -8.02 16 11 C 0.72 11.76 8.03 -86.92 -0.70 11.07 16 12 O -0.57 -11.14 12.88 5.29 0.07 -11.07 16 13 N -0.68 -11.13 5.30 -14.24 -0.08 -11.21 16 14 C 0.20 3.99 6.25 -83.71 -0.52 3.46 16 15 C -0.20 -4.07 8.65 -39.34 -0.34 -4.41 16 16 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 17 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 18 C 0.17 4.20 6.65 -39.13 -0.26 3.94 16 19 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 20 C -0.39 -10.94 9.49 30.88 0.29 -10.65 16 21 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.40 13.67 55.48 0.76 -24.65 16 24 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 28 C -0.26 -5.73 9.08 -39.21 -0.36 -6.09 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.35 7.36 -51.93 -0.38 -0.03 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.20 6.53 -51.93 -0.34 0.87 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 34 H 0.08 0.49 7.40 -51.93 -0.38 0.10 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.40 8.04 -51.93 -0.42 -0.01 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.53 7.47 -51.93 -0.39 0.14 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 5.44 7.26 -40.82 -0.30 5.14 16 42 H 0.12 2.34 6.49 -52.49 -0.34 2.00 16 43 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 44 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -33.20 369.36 -8.88 -42.08 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.85 Total: 8.34 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.89 Total: -11.34 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.24 Total: -43.87 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.20 -8.88 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271513630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.181 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds