Wall clock time and date at job start Tue Mar 31 2020 13:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.09003 * 109.87230 * 306.45862 * 3 2 1 5 5 C 1.54367 * 110.03044 * 67.52090 * 3 2 1 6 6 C 1.55150 * 102.92200 * 141.64835 * 5 3 2 7 7 C 1.54914 * 101.61483 * 324.54880 * 6 5 3 8 8 H 1.09004 * 110.36231 * 155.82690 * 7 6 5 9 9 C 1.53003 * 110.36557 * 278.03743 * 7 6 5 10 10 N 1.47014 * 109.88183 * 185.44110 * 3 2 1 11 11 C 1.34782 * 125.65262 * 61.45137 * 10 3 2 12 12 O 1.21585 * 119.99536 * 355.09780 * 11 10 3 13 13 N 1.34769 * 119.99999 * 175.10601 * 11 10 3 14 14 C 1.39951 * 119.99810 * 185.20977 * 13 11 10 15 15 C 1.38958 * 120.03196 * 34.49819 * 14 13 11 16 16 C 1.38157 * 120.06400 * 179.97438 * 15 14 13 17 17 C 1.38166 * 120.14217 * 0.02562 * 16 15 14 18 18 C 1.38916 * 120.06811 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.03282 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99917 * 174.54606 * 19 18 17 21 21 H 1.08005 * 119.99843 * 5.06790 * 20 19 18 22 22 C 1.38641 * 120.00147 * 185.06680 * 20 19 18 23 23 N 1.31561 * 120.00311 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46927 * 89.99822 * 24 22 20 26 26 H 1.48497 * 109.47608 * 209.99880 * 24 22 20 27 27 H 1.48501 * 109.47384 * 329.99897 * 24 22 20 28 28 C 1.38706 * 120.03567 * 214.22430 * 14 13 11 29 29 H 1.08995 * 109.47488 * 184.96272 * 1 2 3 30 30 H 1.08998 * 109.47237 * 304.96698 * 1 2 3 31 31 H 1.09007 * 109.47042 * 64.96042 * 1 2 3 32 32 H 1.08996 * 109.46823 * 239.99931 * 2 1 3 33 33 H 1.08995 * 109.47029 * 120.00128 * 2 1 3 34 34 H 1.08996 * 110.70522 * 23.30225 * 5 3 2 35 35 H 1.09004 * 110.75544 * 260.01976 * 5 3 2 36 36 H 1.09002 * 111.00613 * 206.45064 * 6 5 3 37 37 H 1.09004 * 111.00416 * 82.64248 * 6 5 3 38 38 H 1.09002 * 109.46475 * 58.54904 * 9 7 6 39 39 H 1.08994 * 109.47182 * 178.54541 * 9 7 6 40 40 H 1.08996 * 109.47095 * 298.54882 * 9 7 6 41 41 H 0.96999 * 120.00470 * 5.20996 * 13 11 10 42 42 H 1.07992 * 119.97003 * 359.95714 * 15 14 13 43 43 H 1.08003 * 119.93404 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.97213 * 179.97438 * 17 16 15 45 45 H 0.96994 * 120.00174 * 180.02562 * 23 22 20 46 46 H 1.07998 * 120.06808 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5893 1.9949 -0.8245 5 6 1.6936 2.1258 1.3401 6 6 2.9509 2.9891 1.6247 7 6 4.0811 2.0865 1.0697 8 1 4.9498 2.6880 0.8020 9 6 4.4677 1.0233 2.0998 10 7 3.5043 1.4551 -0.1311 11 6 4.2038 0.9691 -1.1757 12 8 3.6280 0.3872 -2.0747 13 7 5.5412 1.1281 -1.2236 14 6 6.2540 0.7212 -2.3572 15 6 5.6804 0.8358 -3.6177 16 6 6.3837 0.4349 -4.7372 17 6 7.6586 -0.0814 -4.6075 18 6 8.2372 -0.1995 -3.3501 19 8 9.4897 -0.7074 -3.2235 20 6 10.0355 -0.6901 -1.9907 21 1 9.4496 -0.3606 -1.1453 22 6 11.3488 -1.0954 -1.8082 23 7 12.0623 -1.4972 -2.8378 24 14 12.1051 -1.0708 -0.1004 25 1 11.8707 -2.3782 0.5637 26 1 13.5657 -0.8257 -0.2092 27 1 11.4803 0.0112 0.7023 28 6 7.5360 0.2086 -2.2242 29 1 -0.3634 -1.0237 0.0889 30 1 -0.3633 0.5889 0.8421 31 1 -0.3633 0.4350 -0.9311 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5495 1.3836 2.1252 35 1 0.8094 2.7548 1.2357 36 1 3.0752 3.1576 2.6944 37 1 2.9058 3.9350 1.0850 38 1 3.5928 0.4218 2.3469 39 1 5.2447 0.3812 1.6851 40 1 4.8408 1.5094 3.0012 41 1 6.0098 1.5244 -0.4725 42 1 4.6838 1.2384 -3.7222 43 1 5.9356 0.5245 -5.7158 44 1 8.2058 -0.3944 -5.4845 45 1 12.9810 -1.7811 -2.7101 46 1 7.9854 0.1223 -1.2460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271513630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:27 Heat of formation + Delta-G solvation = -50.837259 kcal Electronic energy + Delta-G solvation = -26977.972533 eV Core-core repulsion = 23253.422433 eV Total energy + Delta-G solvation = -3724.550100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00008 -40.74840 -39.43299 -37.94738 -35.89429 -34.63916 -34.21166 -32.75405 -30.94967 -30.72024 -29.98159 -27.33975 -26.91591 -24.75134 -23.59407 -23.50823 -22.70656 -21.35590 -20.81071 -19.69977 -19.54507 -18.75458 -17.30713 -16.97256 -16.78249 -16.35885 -16.13827 -15.85590 -15.61808 -15.52274 -15.43431 -14.92476 -14.61659 -14.58094 -14.18487 -13.88033 -13.69627 -13.53962 -13.33990 -13.25945 -13.18822 -12.87950 -12.75042 -12.65778 -12.41981 -12.37150 -12.11550 -12.08315 -11.81066 -11.50505 -11.44952 -11.40943 -11.28544 -11.02225 -10.72660 -9.78282 -9.32479 -8.85182 -8.46357 -6.15457 0.43226 0.69503 1.35288 1.42745 1.45530 1.53073 2.01612 2.17934 2.79294 2.84262 3.16997 3.48710 3.53473 3.63805 3.91412 4.05874 4.09391 4.19958 4.27400 4.31015 4.35315 4.43845 4.50054 4.54079 4.59930 4.67937 4.73818 4.75885 4.91625 4.97080 5.00874 5.00977 5.10659 5.11129 5.16397 5.21159 5.24202 5.29627 5.38071 5.42724 5.48356 5.57602 5.66358 5.67000 5.99105 6.02059 6.18685 6.81282 6.97759 7.41564 7.77059 8.76693 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003354 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.741162 B = 8347.110451 C = 9599.414722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.063 0.937 5 C -0.116 4.116 6 C -0.117 4.117 7 C 0.110 3.890 8 H 0.085 0.915 9 C -0.161 4.161 10 N -0.624 5.624 11 C 0.717 3.283 12 O -0.606 6.606 13 N -0.675 5.675 14 C 0.206 3.794 15 C -0.198 4.198 16 C -0.050 4.050 17 C -0.215 4.215 18 C 0.138 3.862 19 O -0.225 6.225 20 C -0.414 4.414 21 H 0.102 0.898 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.018 2.982 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.249 1.249 28 C -0.261 4.261 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.413 0.587 42 H 0.126 0.874 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.273 0.727 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 10.847 14.276 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.047 3.953 4 H 0.081 0.919 5 C -0.154 4.154 6 C -0.154 4.154 7 C 0.007 3.993 8 H 0.103 0.897 9 C -0.219 4.219 10 N -0.360 5.360 11 C 0.420 3.580 12 O -0.485 6.485 13 N -0.323 5.323 14 C 0.111 3.889 15 C -0.219 4.219 16 C -0.068 4.068 17 C -0.234 4.234 18 C 0.086 3.914 19 O -0.132 6.132 20 C -0.490 4.490 21 H 0.119 0.881 22 C -0.219 4.219 23 N -0.558 5.558 24 Si 0.837 3.163 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.173 1.173 28 C -0.283 4.283 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.251 0.749 42 H 0.144 0.856 43 H 0.172 0.828 44 H 0.139 0.861 45 H 0.082 0.918 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.350 10.272 13.404 27.222 hybrid contribution 1.115 -0.381 0.432 1.255 sum -20.235 9.891 13.836 26.434 Atomic orbital electron populations 1.21677 0.93332 1.02316 1.02517 1.21894 0.97624 0.96456 1.01405 1.21680 0.77637 0.96374 0.99585 0.91900 1.22758 0.99116 0.99316 0.94204 1.22795 0.92206 0.97255 1.03181 1.22224 0.98265 0.94268 0.84494 0.89743 1.22185 1.01537 0.98851 0.99360 1.47863 1.07741 1.62164 1.18251 1.15558 0.80981 0.79229 0.82268 1.90898 1.69531 1.47804 1.40251 1.42517 1.05892 1.64776 1.19094 1.17208 0.90160 0.95111 0.86453 1.20817 1.01334 1.08952 0.90843 1.20901 0.91896 0.94819 0.99206 1.20471 0.97869 1.10383 0.94723 1.19552 0.85682 0.91709 0.94428 1.83978 1.25037 1.71066 1.33071 1.21806 0.96898 1.46726 0.83601 0.88081 1.26592 0.95320 0.95621 1.04390 1.70186 1.10057 1.42650 1.32900 0.84601 0.77545 0.79658 0.74495 1.19032 1.19588 1.17254 1.20764 0.96747 1.11639 0.99178 0.92560 0.90265 0.93077 0.94163 0.92033 0.89216 0.87827 0.87077 0.90008 0.91847 0.94446 0.88753 0.74896 0.85613 0.82820 0.86121 0.91807 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.83 71.98 0.71 -1.38 16 2 C -0.14 -2.81 5.41 30.60 0.17 -2.64 16 3 C 0.15 2.79 2.91 45.36 0.13 2.92 16 4 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.12 -1.10 5.19 31.79 0.17 -0.93 16 6 C -0.12 -1.00 6.56 31.99 0.21 -0.79 16 7 C 0.11 1.65 3.07 45.47 0.14 1.79 16 8 H 0.08 1.21 7.20 -2.39 -0.02 1.20 16 9 C -0.16 -2.29 9.49 71.98 0.68 -1.61 16 10 N -0.62 -14.18 2.72 -782.21 -2.13 -16.31 16 11 C 0.72 23.07 8.03 179.06 1.44 24.51 16 12 O -0.61 -24.06 12.88 -3.98 -0.05 -24.12 16 13 N -0.67 -21.73 5.30 -317.23 -1.68 -23.41 16 14 C 0.21 8.21 6.25 38.13 0.24 8.45 16 15 C -0.20 -7.79 8.65 22.42 0.19 -7.59 16 16 C -0.05 -1.89 10.03 22.23 0.22 -1.67 16 17 C -0.21 -9.62 9.99 22.42 0.22 -9.40 16 18 C 0.14 7.06 6.65 22.56 0.15 7.21 16 19 O -0.23 -13.66 9.76 -22.80 -0.22 -13.88 16 20 C -0.41 -24.06 9.49 67.92 0.64 -23.42 16 21 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 22 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 23 N -0.92 -56.45 13.67 21.61 0.30 -56.16 16 24 Si 1.02 42.27 29.55 68.60 2.03 44.30 16 25 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 28 C -0.26 -11.87 9.08 22.51 0.20 -11.66 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.78 7.36 -2.39 -0.02 0.76 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.04 1.19 6.53 -2.39 -0.02 1.18 16 33 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 34 H 0.09 0.71 7.40 -2.39 -0.02 0.69 16 35 H 0.10 0.60 8.14 -2.38 -0.02 0.59 16 36 H 0.11 0.46 8.04 -2.39 -0.02 0.44 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.06 0.90 7.47 -2.39 -0.02 0.88 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.41 10.90 7.26 -92.71 -0.67 10.22 16 42 H 0.13 4.84 6.49 -2.91 -0.02 4.82 16 43 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.13 5.67 5.63 -2.91 -0.02 5.65 16 Total: -1.00 -77.38 369.36 4.55 -72.84 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.32 Total: 33.71 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.99 Total: -16.97 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -3.51 Total: -95.88 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.27 Total: -38.00 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -77.38 4.55 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271513630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.000 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds