Wall clock time and date at job start Tue Mar 31 2020 13:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.47232 * 120.00037 * 2 1 3 5 5 O 1.21283 * 119.99776 * 265.00114 * 4 2 1 6 6 N 1.34773 * 120.00009 * 85.00471 * 4 2 1 7 7 C 1.39237 * 119.99946 * 174.42795 * 6 4 2 8 8 C 1.39488 * 119.83503 * 325.27468 * 7 6 4 9 9 C 1.36377 * 120.16589 * 180.22999 * 8 7 6 10 10 C 1.40864 * 119.83164 * 359.50251 * 9 8 7 11 11 C 1.41155 * 120.16361 * 180.24672 * 10 9 8 12 12 H 1.07998 * 120.00077 * 34.67941 * 11 10 9 13 13 C 1.39901 * 119.99906 * 214.67344 * 11 10 9 14 14 N 1.30874 * 120.00295 * 5.42826 * 13 11 10 15 15 Si 1.86802 * 120.00121 * 185.41989 * 13 11 10 16 16 H 1.48509 * 109.46754 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47214 * 119.99935 * 15 13 11 18 18 H 1.48493 * 109.47560 * 240.00549 * 15 13 11 19 19 C 1.40869 * 119.67117 * 0.49509 * 10 9 8 20 20 C 1.36375 * 119.82982 * 359.75968 * 19 10 9 21 21 N 1.46906 * 109.47537 * 240.00487 * 2 1 3 22 22 C 1.47012 * 111.00230 * 183.63328 * 21 2 1 23 23 C 1.53093 * 109.25691 * 177.60396 * 22 21 2 24 24 O 1.43016 * 109.26055 * 56.84884 * 23 22 21 25 25 C 1.43017 * 113.73798 * 301.33003 * 24 23 22 26 26 C 1.47013 * 110.99894 * 59.99361 * 21 2 1 27 27 H 1.08997 * 109.47175 * 299.99445 * 1 2 3 28 28 H 1.08997 * 109.46932 * 60.00334 * 1 2 3 29 29 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47412 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47405 * 299.99714 * 3 2 1 32 32 H 1.08999 * 109.47198 * 60.00000 * 3 2 1 33 33 H 0.96999 * 120.00334 * 354.42902 * 6 4 2 34 34 H 1.07995 * 119.91493 * 359.95841 * 8 7 6 35 35 H 1.08005 * 120.07989 * 179.74832 * 9 8 7 36 36 H 0.96999 * 120.00523 * 180.02562 * 14 13 11 37 37 H 1.08002 * 120.08907 * 179.72841 * 19 10 9 38 38 H 1.08002 * 119.91510 * 179.97438 * 20 19 10 39 39 H 1.09004 * 109.50336 * 297.54231 * 22 21 2 40 40 H 1.09006 * 109.50553 * 57.66643 * 22 21 2 41 41 H 1.08995 * 109.50944 * 296.91294 * 23 22 21 42 42 H 1.09003 * 109.54365 * 176.80378 * 23 22 21 43 43 H 1.09005 * 109.50372 * 298.73507 * 25 24 23 44 44 H 1.08997 * 109.54214 * 178.62171 * 25 24 23 45 45 H 1.08992 * 109.50772 * 302.32987 * 26 21 2 46 46 H 1.08998 * 109.50316 * 62.42121 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3207 -0.0748 2.2223 6 7 2.1611 -2.0519 1.2286 7 6 2.7334 -2.6979 2.3213 8 6 3.7670 -2.0829 3.0277 9 6 4.3356 -2.7115 4.0962 10 6 3.8693 -3.9804 4.4922 11 6 4.4491 -4.6350 5.6002 12 1 4.7941 -4.0604 6.4471 13 6 4.5769 -6.0282 5.6014 14 7 4.2576 -6.7155 4.5344 15 14 5.2033 -6.9074 7.1258 16 1 5.4922 -5.9109 8.1884 17 1 4.1703 -7.8591 7.6081 18 1 6.4449 -7.6511 6.7934 19 6 2.8250 -4.5950 3.7738 20 6 2.2699 -3.9564 2.7043 21 7 2.0198 -0.6924 -1.1995 22 6 3.4868 -0.7878 -1.1908 23 6 3.9495 -1.5665 -2.4250 24 8 3.4559 -0.9215 -3.6021 25 6 2.0305 -0.8121 -3.6440 26 6 1.5483 -0.0258 -2.4220 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8552 -2.5676 0.4661 34 1 4.1210 -1.1085 2.7251 35 1 5.1386 -2.2358 4.6397 36 1 4.3458 -7.6815 4.5353 37 1 2.4653 -5.5697 4.0689 38 1 1.4694 -4.4266 2.1523 39 1 3.9167 0.2137 -1.2098 40 1 3.8124 -1.3072 -0.2894 41 1 3.5634 -2.5847 -2.3788 42 1 5.0389 -1.5912 -2.4532 43 1 1.5886 -1.8085 -3.6332 44 1 1.7314 -0.2910 -4.5534 45 1 0.4590 0.0110 -2.4196 46 1 1.9467 0.9881 -2.4604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278715038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:40 Heat of formation + Delta-G solvation = -46.205385 kcal Electronic energy + Delta-G solvation = -27495.652587 eV Core-core repulsion = 23771.303340 eV Total energy + Delta-G solvation = -3724.349247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83058 -39.13623 -37.53885 -36.33806 -34.46950 -32.87457 -32.09187 -31.37434 -29.61058 -28.92385 -27.51256 -26.77335 -25.38829 -24.13693 -22.81018 -21.46620 -20.80429 -20.21024 -18.94594 -17.59974 -17.21764 -16.61540 -16.30450 -15.80717 -15.26796 -15.20249 -15.16252 -14.73954 -14.53699 -14.24852 -14.00746 -13.90917 -13.15407 -12.80232 -12.75985 -12.58373 -12.27430 -12.12673 -12.11950 -12.02391 -11.74663 -11.66349 -11.42903 -11.40526 -11.20993 -11.15655 -10.89838 -10.65894 -10.54672 -10.02958 -9.87651 -9.74791 -9.32670 -9.18820 -8.75357 -8.59096 -7.57306 -6.88237 -6.67405 -4.32503 2.49011 2.97174 3.06093 3.09924 3.15294 3.28910 3.51032 3.68231 3.70712 3.97593 4.58800 4.65281 4.69582 4.75407 4.88008 4.95190 5.01964 5.09908 5.13127 5.30658 5.42287 5.44406 5.51387 5.58717 5.64492 5.65209 5.66197 5.74794 5.81291 5.98177 6.10374 6.18286 6.36192 6.61933 6.69267 6.76667 6.93017 6.95231 7.05336 7.19534 7.27873 7.59660 7.71836 7.84908 8.04850 8.27447 8.29248 8.60359 8.76542 8.91029 8.99287 10.28328 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.003074 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.595417 B = 9106.185448 C = 9662.716695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.091 3.909 3 C -0.166 4.166 4 C 0.513 3.487 5 O -0.532 6.532 6 N -0.640 5.640 7 C 0.006 3.994 8 C -0.083 4.083 9 C -0.205 4.205 10 C 0.106 3.894 11 C -0.464 4.464 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.810 5.810 15 Si 0.912 3.088 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.138 4.138 20 C -0.117 4.117 21 N -0.523 5.523 22 C 0.005 3.995 23 C 0.067 3.933 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.012 3.988 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.403 0.597 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.278 0.722 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 8.827 -14.673 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.002 4.002 3 C -0.225 4.225 4 C 0.299 3.701 5 O -0.408 6.408 6 N -0.283 5.283 7 C -0.087 4.087 8 C -0.103 4.103 9 C -0.225 4.225 10 C 0.104 3.896 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.437 5.437 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.158 4.158 20 C -0.138 4.138 21 N -0.249 5.249 22 C -0.123 4.123 23 C -0.010 4.010 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.116 4.116 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.848 8.631 -14.193 17.611 hybrid contribution 0.307 -0.048 0.480 0.572 sum -5.540 8.583 -13.713 17.100 Atomic orbital electron populations 1.21840 0.91554 1.03337 1.02675 1.21318 0.97106 0.93074 0.88698 1.22239 1.01985 0.95372 1.02881 1.20110 0.78651 0.82902 0.88471 1.90709 1.49777 1.66114 1.34233 1.43065 1.59441 1.06333 1.19430 1.17246 1.00880 0.95386 0.95159 1.20217 0.94910 0.98272 0.96910 1.20781 1.02999 0.98848 0.99876 1.17674 0.89432 0.90521 0.91987 1.19530 1.35538 0.91451 1.02999 0.90528 1.25850 0.93769 0.97829 0.96857 1.69789 1.38062 1.08322 1.27548 0.86208 0.78845 0.79497 0.81797 1.18577 1.19919 1.20053 1.20937 0.97242 1.00676 0.96935 1.20279 1.00065 0.94637 0.98781 1.62455 1.10226 1.51001 1.01239 1.22992 0.87633 1.00858 1.00825 1.22660 0.99448 0.95724 0.83189 1.87978 1.21014 1.80185 1.41380 1.22652 0.81466 1.00060 0.97100 1.22898 1.01484 0.97019 0.90177 0.91224 0.91505 0.91186 0.92063 0.91915 0.90567 0.76220 0.88348 0.88634 0.91159 0.86151 0.89085 0.93335 0.88558 0.91916 0.88291 0.92177 0.88625 0.89144 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.23 37.16 0.31 -1.11 16 2 C 0.09 1.12 0.63 -132.75 -0.08 1.04 16 3 C -0.17 -1.97 7.31 37.16 0.27 -1.70 16 4 C 0.51 8.75 5.12 -10.99 -0.06 8.69 16 5 O -0.53 -11.21 13.86 5.55 0.08 -11.14 16 6 N -0.64 -11.20 4.14 -9.74 -0.04 -11.24 16 7 C 0.01 0.12 6.26 -83.57 -0.52 -0.40 16 8 C -0.08 -1.96 8.57 -39.79 -0.34 -2.31 16 9 C -0.20 -5.17 9.74 -39.26 -0.38 -5.55 16 10 C 0.11 2.84 5.50 -106.80 -0.59 2.25 16 11 C -0.46 -12.38 9.03 -37.85 -0.34 -12.72 16 12 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 13 C 0.07 1.82 5.31 -17.34 -0.09 1.73 16 14 N -0.81 -20.88 10.96 55.55 0.61 -20.27 16 15 Si 0.91 18.89 29.56 -169.99 -5.03 13.86 16 16 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 C -0.14 -3.52 8.57 -39.26 -0.34 -3.86 16 20 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 21 N -0.52 -5.72 3.89 -220.00 -0.86 -6.58 16 22 C 0.00 0.06 4.90 -3.71 -0.02 0.04 16 23 C 0.07 0.72 7.01 37.21 0.26 0.98 16 24 O -0.39 -4.34 10.83 -35.23 -0.38 -4.72 16 25 C 0.06 0.55 7.01 37.21 0.26 0.81 16 26 C 0.01 0.11 4.87 -3.71 -0.02 0.09 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.53 6.35 -51.93 -0.33 0.20 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 31 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.40 6.10 8.28 -40.82 -0.34 5.77 16 34 H 0.10 2.29 6.51 -52.49 -0.34 1.94 16 35 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.12 3.17 6.47 -52.49 -0.34 2.83 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 40 H 0.10 1.37 6.22 -51.93 -0.32 1.05 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.65 6.19 -51.93 -0.32 0.33 16 46 H 0.05 0.44 6.44 -51.93 -0.33 0.11 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -29.62 357.45 -8.98 -38.61 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.68 Total: 11.14 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.08 Total: -15.06 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: -0.29 Total: -38.08 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.30 Total: -15.85 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.62 -8.98 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278715038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.598 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds