Wall clock time and date at job start Tue Mar 31 2020 13:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.47232 * 120.00037 * 2 1 3 5 5 O 1.21283 * 119.99776 * 265.00114 * 4 2 1 6 6 N 1.34773 * 120.00009 * 85.00471 * 4 2 1 7 7 C 1.39237 * 119.99946 * 174.42795 * 6 4 2 8 8 C 1.39488 * 119.83503 * 325.27468 * 7 6 4 9 9 C 1.36377 * 120.16589 * 180.22999 * 8 7 6 10 10 C 1.40864 * 119.83164 * 359.50251 * 9 8 7 11 11 C 1.41155 * 120.16361 * 180.24672 * 10 9 8 12 12 H 1.07998 * 120.00077 * 34.67941 * 11 10 9 13 13 C 1.39901 * 119.99906 * 214.67344 * 11 10 9 14 14 N 1.30874 * 120.00295 * 5.42826 * 13 11 10 15 15 Si 1.86802 * 120.00121 * 185.41989 * 13 11 10 16 16 H 1.48509 * 109.46754 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47214 * 119.99935 * 15 13 11 18 18 H 1.48493 * 109.47560 * 240.00549 * 15 13 11 19 19 C 1.40869 * 119.67117 * 0.49509 * 10 9 8 20 20 C 1.36375 * 119.82982 * 359.75968 * 19 10 9 21 21 N 1.46906 * 109.47537 * 240.00487 * 2 1 3 22 22 C 1.47012 * 111.00230 * 183.63328 * 21 2 1 23 23 C 1.53093 * 109.25691 * 177.60396 * 22 21 2 24 24 O 1.43016 * 109.26055 * 56.84884 * 23 22 21 25 25 C 1.43017 * 113.73798 * 301.33003 * 24 23 22 26 26 C 1.47013 * 110.99894 * 59.99361 * 21 2 1 27 27 H 1.08997 * 109.47175 * 299.99445 * 1 2 3 28 28 H 1.08997 * 109.46932 * 60.00334 * 1 2 3 29 29 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47412 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47405 * 299.99714 * 3 2 1 32 32 H 1.08999 * 109.47198 * 60.00000 * 3 2 1 33 33 H 0.96999 * 120.00334 * 354.42902 * 6 4 2 34 34 H 1.07995 * 119.91493 * 359.95841 * 8 7 6 35 35 H 1.08005 * 120.07989 * 179.74832 * 9 8 7 36 36 H 0.96999 * 120.00523 * 180.02562 * 14 13 11 37 37 H 1.08002 * 120.08907 * 179.72841 * 19 10 9 38 38 H 1.08002 * 119.91510 * 179.97438 * 20 19 10 39 39 H 1.09004 * 109.50336 * 297.54231 * 22 21 2 40 40 H 1.09006 * 109.50553 * 57.66643 * 22 21 2 41 41 H 1.08995 * 109.50944 * 296.91294 * 23 22 21 42 42 H 1.09003 * 109.54365 * 176.80378 * 23 22 21 43 43 H 1.09005 * 109.50372 * 298.73507 * 25 24 23 44 44 H 1.08997 * 109.54214 * 178.62171 * 25 24 23 45 45 H 1.08992 * 109.50772 * 302.32987 * 26 21 2 46 46 H 1.08998 * 109.50316 * 62.42121 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3207 -0.0748 2.2223 6 7 2.1611 -2.0519 1.2286 7 6 2.7334 -2.6979 2.3213 8 6 3.7670 -2.0829 3.0277 9 6 4.3356 -2.7115 4.0962 10 6 3.8693 -3.9804 4.4922 11 6 4.4491 -4.6350 5.6002 12 1 4.7941 -4.0604 6.4471 13 6 4.5769 -6.0282 5.6014 14 7 4.2576 -6.7155 4.5344 15 14 5.2033 -6.9074 7.1258 16 1 5.4922 -5.9109 8.1884 17 1 4.1703 -7.8591 7.6081 18 1 6.4449 -7.6511 6.7934 19 6 2.8250 -4.5950 3.7738 20 6 2.2699 -3.9564 2.7043 21 7 2.0198 -0.6924 -1.1995 22 6 3.4868 -0.7878 -1.1908 23 6 3.9495 -1.5665 -2.4250 24 8 3.4559 -0.9215 -3.6021 25 6 2.0305 -0.8121 -3.6440 26 6 1.5483 -0.0258 -2.4220 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.8552 -2.5676 0.4661 34 1 4.1210 -1.1085 2.7251 35 1 5.1386 -2.2358 4.6397 36 1 4.3458 -7.6815 4.5353 37 1 2.4653 -5.5697 4.0689 38 1 1.4694 -4.4266 2.1523 39 1 3.9167 0.2137 -1.2098 40 1 3.8124 -1.3072 -0.2894 41 1 3.5634 -2.5847 -2.3788 42 1 5.0389 -1.5912 -2.4532 43 1 1.5886 -1.8085 -3.6332 44 1 1.7314 -0.2910 -4.5534 45 1 0.4590 0.0110 -2.4196 46 1 1.9467 0.9881 -2.4604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278715038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:39 Heat of formation + Delta-G solvation = -65.187505 kcal Electronic energy + Delta-G solvation = -27496.475714 eV Core-core repulsion = 23771.303340 eV Total energy + Delta-G solvation = -3725.172373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01234 -40.34259 -39.16551 -37.46189 -36.19638 -34.66324 -33.02814 -32.17866 -31.51349 -30.76465 -28.42315 -27.69424 -26.99755 -25.21015 -24.06753 -23.17857 -22.34175 -21.49497 -20.16674 -19.27545 -18.62279 -18.14194 -17.22994 -17.03555 -16.83012 -16.29415 -15.99942 -15.85683 -15.76541 -15.59032 -15.37817 -15.06890 -14.76252 -14.50961 -14.04690 -13.89600 -13.62340 -13.52568 -13.35250 -13.16939 -13.01982 -12.84387 -12.82403 -12.67889 -12.48741 -12.38602 -12.30070 -12.04641 -11.81747 -11.57557 -11.43838 -11.14107 -10.83904 -10.69656 -10.41584 -9.50771 -9.49886 -8.75224 -8.55743 -6.31479 0.75333 1.09921 1.39812 1.41196 1.54164 1.74740 2.24172 2.29697 2.56241 2.79044 2.95931 3.51972 3.67641 3.83029 3.91150 3.96517 4.02195 4.11896 4.26947 4.34233 4.36938 4.43142 4.52713 4.61865 4.63289 4.68966 4.74682 4.81109 4.86009 4.89202 4.92072 5.02166 5.08603 5.12891 5.14991 5.22404 5.32118 5.41600 5.64625 5.69356 5.85584 5.86971 6.01540 6.10235 6.19327 6.36121 6.64262 6.72904 6.94602 6.98016 7.36443 8.41959 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.003074 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.595417 B = 9106.185448 C = 9662.716695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.101 3.899 3 C -0.162 4.162 4 C 0.513 3.487 5 O -0.574 6.574 6 N -0.633 5.633 7 C 0.024 3.976 8 C -0.092 4.092 9 C -0.221 4.221 10 C 0.076 3.924 11 C -0.503 4.503 12 H 0.070 0.930 13 C 0.033 3.967 14 N -0.838 5.838 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.263 1.263 18 H -0.267 1.267 19 C -0.153 4.153 20 C -0.116 4.116 21 N -0.520 5.520 22 C 0.009 3.991 23 C 0.071 3.929 24 O -0.402 6.402 25 C 0.060 3.940 26 C 0.012 3.988 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.286 0.714 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 9.043 -16.765 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 C -0.221 4.221 4 C 0.301 3.699 5 O -0.453 6.453 6 N -0.277 5.277 7 C -0.070 4.070 8 C -0.112 4.112 9 C -0.241 4.241 10 C 0.073 3.927 11 C -0.533 4.533 12 H 0.088 0.912 13 C -0.180 4.180 14 N -0.466 5.466 15 Si 0.806 3.194 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.191 1.191 19 C -0.173 4.173 20 C -0.136 4.136 21 N -0.247 5.247 22 C -0.120 4.120 23 C -0.006 4.006 24 O -0.321 6.321 25 C -0.017 4.017 26 C -0.115 4.115 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.383 8.857 -16.339 19.998 hybrid contribution 0.721 0.008 0.978 1.215 sum -6.662 8.865 -15.360 18.945 Atomic orbital electron populations 1.21878 0.89320 1.03974 1.04002 1.21233 0.98516 0.92466 0.86960 1.22232 1.01012 0.95125 1.03763 1.21031 0.77050 0.82297 0.89535 1.90693 1.51334 1.66834 1.36426 1.42999 1.59217 1.06841 1.18633 1.17298 0.99445 0.94969 0.95279 1.20297 0.95614 0.98342 0.96956 1.20902 1.03516 0.98949 1.00723 1.17963 0.90429 0.91315 0.92968 1.19722 1.37513 0.92761 1.03330 0.91193 1.26658 0.93497 0.97880 0.99921 1.69835 1.38537 1.08998 1.29180 0.85116 0.78578 0.78104 0.77604 1.18663 1.18794 1.19138 1.20912 0.97653 1.00541 0.98218 1.20520 1.00326 0.94736 0.98059 1.62480 1.09395 1.51192 1.01638 1.22886 0.88491 1.00374 1.00238 1.22607 0.99854 0.95445 0.82679 1.87967 1.22754 1.80182 1.41151 1.22884 0.80060 1.00705 0.98018 1.23046 1.02917 0.96804 0.88727 0.92003 0.88146 0.90926 0.93650 0.88852 0.91803 0.74480 0.88355 0.88739 0.90342 0.87395 0.85953 0.93888 0.91267 0.91832 0.87866 0.91749 0.86183 0.86641 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.23 71.98 0.59 -1.74 16 2 C 0.10 2.29 0.63 2.78 0.00 2.29 16 3 C -0.16 -3.57 7.31 71.98 0.53 -3.04 16 4 C 0.51 17.15 5.12 87.66 0.45 17.60 16 5 O -0.57 -24.44 13.86 -3.04 -0.04 -24.48 16 6 N -0.63 -21.59 4.14 -303.11 -1.26 -22.84 16 7 C 0.02 1.03 6.26 38.57 0.24 1.27 16 8 C -0.09 -4.47 8.57 22.14 0.19 -4.28 16 9 C -0.22 -11.65 9.74 22.48 0.22 -11.43 16 10 C 0.08 4.20 5.50 -21.28 -0.12 4.08 16 11 C -0.50 -27.90 9.03 23.39 0.21 -27.69 16 12 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 13 C 0.03 1.70 5.31 85.24 0.45 2.15 16 14 N -0.84 -43.97 10.96 21.82 0.24 -43.73 16 15 Si 0.98 39.16 29.56 68.60 2.03 41.19 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 C -0.15 -8.02 8.57 22.48 0.19 -7.83 16 20 C -0.12 -5.26 9.90 22.14 0.22 -5.04 16 21 N -0.52 -10.07 3.89 -849.94 -3.31 -13.38 16 22 C 0.01 0.20 4.90 86.31 0.42 0.62 16 23 C 0.07 1.44 7.01 72.01 0.50 1.94 16 24 O -0.40 -8.04 10.83 -148.98 -1.61 -9.65 16 25 C 0.06 0.81 7.01 72.02 0.50 1.32 16 26 C 0.01 0.16 4.87 86.32 0.42 0.58 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.09 6.35 -2.39 -0.02 1.08 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.13 6.54 -2.39 -0.02 1.12 16 31 H 0.09 1.47 6.46 -2.38 -0.02 1.45 16 32 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 33 H 0.42 11.89 8.28 -92.71 -0.77 11.12 16 34 H 0.10 4.73 6.51 -2.91 -0.02 4.71 16 35 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 37 H 0.11 5.85 6.47 -2.91 -0.02 5.84 16 38 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.04 1.02 6.52 -2.38 -0.02 1.01 16 40 H 0.07 1.97 6.22 -2.38 -0.01 1.95 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.12 1.03 6.19 -2.39 -0.01 1.02 16 46 H 0.05 0.71 6.44 -2.39 -0.02 0.69 16 Total: -1.00 -66.76 357.45 1.32 -65.44 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.23 Total: 36.66 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 5.03 Total: -29.20 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -4.32 Total: -79.95 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.66 Total: -34.14 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -66.76 1.32 -65.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278715038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.253 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds