Wall clock time and date at job start Tue Mar 31 2020 12:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 C 1.53004 * 109.46770 * 239.99959 * 2 1 3 5 5 N 1.46501 * 109.47197 * 120.00240 * 2 1 3 6 6 C 1.34772 * 120.00090 * 60.00049 * 5 2 1 7 7 O 1.21589 * 120.00096 * 359.97438 * 6 5 2 8 8 C 1.47593 * 119.99829 * 180.02562 * 6 5 2 9 9 C 1.39757 * 120.07276 * 179.97438 * 8 6 5 10 10 C 1.37667 * 119.92783 * 180.29747 * 9 8 6 11 11 C 1.39138 * 120.07103 * 359.44418 * 10 9 8 12 12 N 1.39435 * 119.92590 * 180.28112 * 11 10 9 13 13 C 1.34771 * 120.00171 * 33.69950 * 12 11 10 14 14 O 1.21277 * 120.00294 * 5.27446 * 13 12 11 15 15 C 1.50703 * 120.00196 * 185.27520 * 13 12 11 16 16 C 1.52995 * 109.47451 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47451 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99384 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99886 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99538 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46973 * 90.00487 * 21 19 17 23 23 H 1.48504 * 109.46822 * 210.00082 * 21 19 17 24 24 H 1.48493 * 109.47166 * 330.00119 * 21 19 17 25 25 C 1.39131 * 120.14580 * 0.55467 * 11 10 9 26 26 C 1.37668 * 120.07681 * 359.72131 * 25 11 10 27 27 H 1.09004 * 109.47173 * 299.99769 * 1 2 3 28 28 H 1.08998 * 109.47439 * 59.99538 * 1 2 3 29 29 H 1.09004 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46885 * 299.99944 * 3 2 1 32 32 H 1.08996 * 109.47038 * 60.00325 * 3 2 1 33 33 H 1.08996 * 109.47316 * 299.99684 * 4 2 1 34 34 H 1.08998 * 109.47139 * 60.00416 * 4 2 1 35 35 H 1.09007 * 109.47117 * 179.97438 * 4 2 1 36 36 H 0.97004 * 119.99368 * 239.99624 * 5 2 1 37 37 H 1.08001 * 120.03243 * 0.02562 * 9 8 6 38 38 H 1.07996 * 119.96610 * 179.71969 * 10 9 8 39 39 H 0.96999 * 119.99736 * 213.69327 * 12 11 10 40 40 H 1.09003 * 109.47137 * 300.00121 * 15 13 12 41 41 H 1.09003 * 109.47182 * 59.99660 * 15 13 12 42 42 H 1.09003 * 109.47371 * 300.00373 * 16 15 13 43 43 H 1.09003 * 109.46882 * 59.99871 * 16 15 13 44 44 H 0.96998 * 119.99544 * 179.97438 * 20 19 17 45 45 H 1.08001 * 119.96599 * 179.70578 * 25 11 10 46 46 H 1.08002 * 120.03823 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6928 -1.9810 1.4094 7 8 0.9933 -2.5717 0.6093 8 6 2.1843 -2.6766 2.6147 9 6 1.8472 -4.0144 2.8377 10 6 2.3023 -4.6585 3.9661 11 6 3.1066 -3.9825 4.8782 12 7 3.5706 -4.6395 6.0171 13 6 3.8607 -5.9546 5.9653 14 8 3.8102 -6.5455 4.9074 15 6 4.2479 -6.6910 7.2218 16 6 4.5228 -8.1587 6.8887 17 6 4.9106 -8.8950 8.1451 18 1 4.9560 -8.3687 9.0871 19 6 5.2075 -10.2404 8.0919 20 7 5.1527 -10.8810 6.9447 21 14 5.6889 -11.1528 9.6493 22 1 4.4708 -11.7009 10.2983 23 1 6.6103 -12.2657 9.3061 24 1 6.3681 -10.2172 10.5812 25 6 3.4440 -2.6506 4.6593 26 6 2.9876 -1.9989 3.5358 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2496 36 1 2.5760 -0.2192 1.8346 37 1 1.2268 -4.5411 2.1277 38 1 2.0385 -5.6910 4.1412 39 1 3.6848 -4.1501 6.8468 40 1 5.1452 -6.2400 7.6454 41 1 3.4343 -6.6291 7.9446 42 1 3.6253 -8.6096 6.4652 43 1 5.3363 -8.2210 6.1658 44 1 5.3620 -11.8275 6.9073 45 1 4.0646 -2.1272 5.3716 46 1 3.2497 -0.9649 3.3667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291955318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:16 Heat of formation + Delta-G solvation = -86.238972 kcal Electronic energy + Delta-G solvation = -25485.492923 eV Core-core repulsion = 21759.407690 eV Total energy + Delta-G solvation = -3726.085233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79243 -41.13673 -39.30731 -37.44819 -35.91480 -35.57442 -33.51554 -32.98461 -31.92812 -30.56326 -28.22404 -28.19293 -27.81439 -25.24245 -24.04605 -23.43529 -21.91201 -21.28354 -20.50492 -19.22950 -18.83028 -18.42242 -17.61189 -16.97648 -16.65704 -16.47551 -16.17194 -16.01208 -15.47983 -15.38593 -15.03155 -14.84201 -14.63113 -14.48560 -14.35027 -14.15207 -13.72447 -13.61799 -13.26069 -13.23925 -13.01172 -12.98849 -12.82426 -12.53711 -12.48244 -12.31131 -12.10071 -11.96984 -11.93191 -11.66211 -11.46734 -11.31503 -10.88964 -10.66671 -10.57194 -10.11987 -10.04119 -9.19880 -8.18683 -6.32694 -0.26477 0.35655 1.42582 1.44809 1.45472 1.55907 1.91742 2.05834 2.15622 2.43389 2.86441 3.14904 3.66631 3.73443 3.86225 3.97210 3.99113 4.01821 4.15259 4.27910 4.36466 4.46825 4.52963 4.53942 4.71642 4.73549 4.78710 4.87956 4.94898 4.96637 5.01856 5.04631 5.09007 5.24026 5.24513 5.26935 5.39960 5.40808 5.42590 5.49992 5.61080 5.62728 5.83838 5.89358 6.15858 6.42006 6.61436 6.85954 7.16127 7.26385 7.37878 8.93878 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.040821 B = 0.001918 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.759903 B =14596.765881 C =14960.193021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.163 3.837 3 C -0.148 4.148 4 C -0.164 4.164 5 N -0.706 5.706 6 C 0.562 3.438 7 O -0.573 6.573 8 C -0.171 4.171 9 C -0.053 4.053 10 C -0.157 4.157 11 C 0.169 3.831 12 N -0.661 5.661 13 C 0.511 3.489 14 O -0.562 6.562 15 C -0.116 4.116 16 C 0.039 3.961 17 C -0.542 4.542 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.253 1.253 25 C -0.144 4.144 26 C -0.048 4.048 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.414 0.586 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.433 0.567 40 H 0.114 0.886 41 H 0.112 0.888 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.262 0.738 45 H 0.174 0.826 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 32.186 -7.090 33.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.222 4.222 5 N -0.359 5.359 6 C 0.351 3.649 7 O -0.454 6.454 8 C -0.175 4.175 9 C -0.073 4.073 10 C -0.178 4.178 11 C 0.073 3.927 12 N -0.308 5.308 13 C 0.302 3.698 14 O -0.438 6.438 15 C -0.156 4.156 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.177 1.177 25 C -0.164 4.164 26 C -0.067 4.067 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.274 0.726 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.000 1.000 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.191 0.809 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.484 31.181 -8.423 32.761 hybrid contribution 0.270 -1.293 0.778 1.533 sum -5.214 29.888 -7.645 31.287 Atomic orbital electron populations 1.22196 0.94833 1.02222 1.02752 1.20504 0.94099 0.93330 0.84226 1.22052 1.02255 0.91921 1.04285 1.22213 1.01133 1.01201 0.97631 1.45978 1.53391 1.10769 1.25761 1.18291 0.79343 0.82262 0.85004 1.90712 1.39612 1.67348 1.47714 1.19950 1.05166 0.94824 0.97600 1.21030 0.96829 0.93878 0.95540 1.21051 0.99606 1.00622 0.96527 1.18266 0.92822 0.93174 0.88397 1.43507 1.64755 1.09435 1.13072 1.21683 0.74698 0.81742 0.91708 1.90709 1.51673 1.68079 1.33373 1.21679 1.04362 0.95923 0.93613 1.18722 0.94700 0.90849 0.95586 1.21716 1.46164 0.94819 0.95262 0.90260 1.26150 0.95483 0.99154 0.99808 1.70180 1.50091 1.10035 1.27515 0.85318 0.78176 0.78004 0.78721 1.19845 1.21406 1.17683 1.21216 1.02647 0.92401 1.00140 1.21433 0.93167 1.00716 0.91379 0.91990 0.90448 0.93639 0.90864 0.89744 0.90596 0.93694 0.90387 0.92313 0.74806 0.86238 0.87397 0.72617 0.86745 0.86998 0.99965 0.99815 0.92925 0.80861 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.40 71.98 0.60 -1.88 16 2 C 0.16 2.14 1.06 3.60 0.00 2.14 16 3 C -0.15 -0.83 8.59 71.98 0.62 -0.22 16 4 C -0.16 -2.66 8.40 71.98 0.60 -2.06 16 5 N -0.71 -9.96 5.05 -425.99 -2.15 -12.11 16 6 C 0.56 12.94 7.18 86.71 0.62 13.57 16 7 O -0.57 -17.77 12.54 -3.99 -0.05 -17.82 16 8 C -0.17 -3.90 5.88 -20.08 -0.12 -4.02 16 9 C -0.05 -1.56 9.58 22.50 0.22 -1.34 16 10 C -0.16 -5.01 8.63 22.35 0.19 -4.82 16 11 C 0.17 4.31 6.27 38.36 0.24 4.55 16 12 N -0.66 -16.38 5.32 -303.50 -1.61 -18.00 16 13 C 0.51 18.62 7.56 87.66 0.66 19.29 16 14 O -0.56 -26.66 13.67 -3.02 -0.04 -26.70 16 15 C -0.12 -4.32 5.64 29.85 0.17 -4.15 16 16 C 0.04 2.12 4.26 29.85 0.13 2.24 16 17 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 18 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 20 N -0.94 -59.33 13.29 21.45 0.28 -59.04 16 21 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 25 C -0.14 -2.34 9.94 22.35 0.22 -2.11 16 26 C -0.05 -0.71 9.53 22.50 0.21 -0.49 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 1.04 6.16 -2.39 -0.01 1.02 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.04 1.07 6.16 -2.39 -0.01 1.06 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.41 2.89 6.49 -92.71 -0.60 2.29 16 37 H 0.12 3.77 7.64 -2.91 -0.02 3.75 16 38 H 0.11 4.15 6.42 -2.91 -0.02 4.13 16 39 H 0.43 6.55 8.81 -92.71 -0.82 5.74 16 40 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.11 3.57 8.14 -2.39 -0.02 3.56 16 42 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 43 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 44 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 46 H 0.17 0.85 6.39 -2.91 -0.02 0.84 16 Total: -1.00 -85.04 377.89 3.11 -81.93 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.42 Total: 15.12 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.08 Total: -9.18 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -3.48 Total: -89.15 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.09 Total: -44.53 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -85.04 3.11 -81.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291955318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.311 kcal (2) G-P(sol) polarization free energy of solvation -85.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds