Wall clock time and date at job start Tue Mar 31 2020 13:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 C 1.50699 * 109.47012 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00275 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99604 * 180.02562 * 4 3 2 7 7 C 1.39922 * 119.99890 * 175.50138 * 6 4 3 8 8 C 1.38941 * 120.03857 * 34.70552 * 7 6 4 9 9 C 1.38139 * 120.07184 * 179.97438 * 8 7 6 10 10 C 1.38181 * 120.13992 * 0.02562 * 9 8 7 11 11 C 1.38896 * 120.07242 * 359.97438 * 10 9 8 12 12 N 1.39924 * 120.03883 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99443 * 325.26720 * 12 11 10 14 14 O 1.21281 * 120.00423 * 4.50454 * 13 12 11 15 15 C 1.50705 * 119.99554 * 184.49960 * 13 12 11 16 16 C 1.53001 * 109.46944 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47075 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99908 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99880 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46636 * 90.00552 * 21 19 17 23 23 H 1.48497 * 109.47093 * 210.00368 * 21 19 17 24 24 H 1.48491 * 109.47120 * 330.00407 * 21 19 17 25 25 C 1.38732 * 120.03355 * 214.66732 * 7 6 4 26 26 C 1.50699 * 120.06936 * 359.97438 * 25 7 6 27 27 H 1.08990 * 109.47091 * 300.00077 * 1 2 3 28 28 H 1.09002 * 109.46587 * 60.00338 * 1 2 3 29 29 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46914 * 239.99685 * 2 1 3 31 31 H 1.09001 * 109.46582 * 120.00217 * 2 1 3 32 32 H 1.09006 * 109.46819 * 59.99770 * 3 2 1 33 33 H 1.08996 * 109.47132 * 300.00293 * 3 2 1 34 34 H 0.97008 * 120.00429 * 355.49210 * 6 4 3 35 35 H 1.07997 * 119.96319 * 0.26104 * 8 7 6 36 36 H 1.08001 * 119.92997 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.96307 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00304 * 145.27517 * 12 11 10 39 39 H 1.09001 * 109.46859 * 299.99976 * 15 13 12 40 40 H 1.08995 * 109.47135 * 60.00354 * 15 13 12 41 41 H 1.09004 * 109.46627 * 299.99823 * 16 15 13 42 42 H 1.09001 * 109.47459 * 59.99405 * 16 15 13 43 43 H 0.97003 * 119.99515 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.46954 * 270.01799 * 26 25 7 45 45 H 1.09002 * 109.47134 * 30.02577 * 26 25 7 46 46 H 1.09002 * 109.46603 * 150.02048 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3920 0.0015 6 7 4.2209 2.6096 0.0013 7 6 5.6169 2.6114 0.0969 8 6 6.3562 1.5976 -0.4998 9 6 7.7344 1.5991 -0.4062 10 6 8.3822 2.6078 0.2810 11 6 7.6489 3.6241 0.8798 12 7 8.3055 4.6455 1.5751 13 6 9.4295 4.3744 2.2678 14 8 9.9171 3.2649 2.2224 15 6 10.0803 5.4501 3.0987 16 6 11.3302 4.8849 3.7763 17 6 11.9814 5.9607 4.6067 18 1 11.5475 6.9488 4.6468 19 6 13.1313 5.6834 5.3152 20 7 13.6600 4.4803 5.2660 21 14 13.9389 7.0172 6.3440 22 1 13.3807 6.9871 7.7198 23 1 15.4039 6.7810 6.3989 24 1 13.6740 8.3435 5.7312 25 6 6.2642 3.6260 0.7870 26 6 5.4655 4.7279 1.4341 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7382 3.4484 -0.0647 35 1 5.8531 0.8102 -1.0412 36 1 8.3069 0.8097 -0.8706 37 1 9.4598 2.6058 0.3527 38 1 7.9518 5.5486 1.5587 39 1 10.3615 6.2849 2.4567 40 1 9.3797 5.7960 3.8586 41 1 11.0493 4.0499 4.4182 42 1 12.0308 4.5391 3.0162 43 1 14.4692 4.2854 5.7642 44 1 5.3317 5.5444 0.7246 45 1 4.4907 4.3427 1.7331 46 1 5.9967 5.0936 2.3129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292463948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:29 Heat of formation + Delta-G solvation = -67.386678 kcal Electronic energy + Delta-G solvation = -25616.655057 eV Core-core repulsion = 21891.387320 eV Total energy + Delta-G solvation = -3725.267737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98579 -39.95549 -38.25326 -35.39450 -34.75616 -34.30680 -33.51655 -32.06123 -31.11304 -29.48983 -27.99749 -26.85919 -25.71049 -23.62333 -22.41891 -21.44857 -21.32684 -20.34255 -19.75033 -17.94539 -17.62791 -17.02365 -16.37096 -16.00647 -15.56416 -15.49327 -15.25649 -14.70745 -14.58505 -14.42231 -14.24182 -13.86870 -13.54310 -13.47020 -13.29523 -12.70751 -12.60743 -12.47231 -12.24219 -12.17206 -12.04705 -11.71926 -11.61850 -11.34837 -11.20896 -11.16498 -10.96332 -10.69874 -10.62201 -10.09454 -10.01969 -9.83334 -9.69307 -9.22543 -9.08517 -8.35476 -8.26750 -7.83537 -5.98749 -4.03612 1.26396 1.38495 2.33365 2.72644 3.08145 3.31764 3.36568 3.39292 3.42631 3.86004 4.26910 4.43580 4.45161 4.55396 4.74049 4.86472 4.95787 5.03957 5.13727 5.15919 5.28168 5.32861 5.36318 5.36346 5.39852 5.57021 5.62078 5.64164 5.69466 5.72470 5.86995 5.90825 6.11917 6.12682 6.20426 6.32515 6.44245 6.62426 6.70177 6.81133 7.11905 7.16579 7.67219 7.70959 7.80569 7.84414 8.02872 8.33531 8.59093 9.04346 9.60195 11.12102 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028816 B = 0.002067 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.439319 B =13545.108474 C =13817.374459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.509 3.491 5 O -0.517 6.517 6 N -0.671 5.671 7 C 0.153 3.847 8 C -0.138 4.138 9 C -0.090 4.090 10 C -0.131 4.131 11 C 0.173 3.827 12 N -0.684 5.684 13 C 0.509 3.491 14 O -0.510 6.510 15 C -0.128 4.128 16 C 0.036 3.964 17 C -0.529 4.529 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.888 5.888 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.146 4.146 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.408 0.592 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.407 0.593 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.042 -1.249 -13.985 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.297 3.703 5 O -0.391 6.391 6 N -0.317 5.317 7 C 0.059 3.941 8 C -0.159 4.159 9 C -0.109 4.109 10 C -0.152 4.152 11 C 0.077 3.923 12 N -0.330 5.330 13 C 0.298 3.702 14 O -0.383 6.383 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.151 4.151 26 C -0.169 4.169 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.244 0.756 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.243 0.757 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.099 -2.907 -13.863 29.695 hybrid contribution 0.074 1.601 0.632 1.723 sum -26.025 -1.306 -13.231 29.224 Atomic orbital electron populations 1.21792 0.95313 1.02136 1.01791 1.21300 0.95403 0.94388 1.03814 1.21736 0.90821 1.00692 1.04637 1.20968 0.90577 0.83290 0.75492 1.90729 1.70084 1.31169 1.47164 1.43497 1.05264 1.09714 1.73191 1.17195 0.82008 0.96569 0.98320 1.21148 0.93741 0.99511 1.01503 1.20956 0.93752 0.97965 0.98231 1.21409 1.01674 0.94849 0.97264 1.17383 0.89677 0.91329 0.93911 1.43902 1.27682 1.10988 1.50424 1.21845 0.78798 0.90969 0.78549 1.90675 1.61534 1.24096 1.62019 1.21910 1.00799 0.96011 0.98094 1.18924 0.89527 0.96239 0.95460 1.21190 1.09720 0.97177 1.28623 0.92553 1.25027 0.97117 0.95448 0.96772 1.69997 1.21014 1.19900 1.41769 0.86577 0.78628 0.82032 0.80625 1.20670 1.21198 1.19888 1.19326 0.92315 0.99897 1.03543 1.20641 0.99535 0.96223 1.00519 0.92616 0.92669 0.92280 0.91104 0.91042 0.88589 0.88652 0.75580 0.84655 0.85521 0.83927 0.75703 0.89836 0.89872 0.95708 0.95673 0.92898 0.91271 0.91694 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.75 5.70 -27.89 -0.16 -0.91 16 4 C 0.51 4.84 7.67 -10.99 -0.08 4.75 16 5 O -0.52 -7.08 13.40 5.56 0.07 -7.00 16 6 N -0.67 -5.80 4.75 -9.88 -0.05 -5.84 16 7 C 0.15 1.86 6.28 -83.72 -0.53 1.33 16 8 C -0.14 -1.88 8.69 -39.36 -0.34 -2.22 16 9 C -0.09 -1.27 10.03 -39.64 -0.40 -1.67 16 10 C -0.13 -2.10 8.70 -39.36 -0.34 -2.44 16 11 C 0.17 2.54 6.28 -83.72 -0.53 2.02 16 12 N -0.68 -9.77 4.75 -9.88 -0.05 -9.82 16 13 C 0.51 9.57 7.67 -10.98 -0.08 9.49 16 14 O -0.51 -11.72 13.39 5.56 0.07 -11.65 16 15 C -0.13 -2.50 5.64 -27.88 -0.16 -2.66 16 16 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.15 -1.76 5.91 -104.24 -0.62 -2.38 16 26 C -0.11 -0.94 8.93 36.01 0.32 -0.62 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.41 2.09 7.85 -40.82 -0.32 1.77 16 35 H 0.14 1.86 6.21 -52.49 -0.33 1.53 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.14 2.57 6.19 -52.49 -0.33 2.24 16 38 H 0.41 4.33 7.85 -40.82 -0.32 4.01 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.46 7.17 -51.93 -0.37 0.09 16 46 H 0.07 0.64 7.17 -51.93 -0.37 0.27 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -36.21 379.99 -8.78 -44.99 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.06 Total: 2.82 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.21 Total: -9.20 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.64 Total: -42.16 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.15 Total: -18.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.21 -8.78 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292463948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.398 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds