Wall clock time and date at job start Tue Mar 31 2020 13:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46847 * 2 1 4 4 C 1.50703 * 109.46743 * 180.02562 * 3 2 1 5 5 O 1.21288 * 120.00159 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00115 * 179.97438 * 4 3 2 7 7 C 1.39925 * 120.00271 * 185.27281 * 6 4 3 8 8 C 1.38878 * 120.06776 * 33.29408 * 7 6 4 9 9 C 1.38109 * 119.92637 * 180.02562 * 8 7 6 10 10 C 1.38280 * 120.07144 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.92718 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47040 * 90.00554 * 11 10 9 13 13 C 1.34769 * 119.99915 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00555 * 359.97438 * 13 12 11 15 15 C 1.50709 * 120.00010 * 180.02562 * 13 12 11 16 16 C 1.52994 * 109.46983 * 179.97438 * 15 13 12 17 17 C 1.50711 * 109.46823 * 179.97438 * 16 15 13 18 18 H 1.07991 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99739 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00089 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47169 * 89.99992 * 21 19 17 23 23 H 1.48502 * 109.47245 * 210.00254 * 21 19 17 24 24 H 1.48508 * 109.47229 * 330.00281 * 21 19 17 25 25 C 1.38281 * 120.14336 * 0.26198 * 10 9 8 26 26 C 1.38113 * 120.07010 * 359.47992 * 25 10 9 27 27 H 1.09001 * 109.46761 * 300.00108 * 1 2 3 28 28 H 1.08997 * 109.47095 * 59.99837 * 1 2 3 29 29 H 1.08993 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46536 * 240.00364 * 2 1 3 31 31 H 1.08997 * 109.47095 * 120.00163 * 2 1 3 32 32 H 1.08993 * 109.47320 * 60.00056 * 3 2 1 33 33 H 1.08997 * 109.47407 * 299.99972 * 3 2 1 34 34 H 0.96998 * 119.99590 * 5.27901 * 6 4 3 35 35 H 1.08000 * 120.03178 * 0.02562 * 8 7 6 36 36 H 1.07995 * 119.96211 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.47083 * 209.99955 * 11 10 9 38 38 H 1.08994 * 109.47304 * 330.00149 * 11 10 9 39 39 H 0.96997 * 119.99738 * 359.97438 * 12 11 10 40 40 H 1.09005 * 109.46423 * 299.99382 * 15 13 12 41 41 H 1.08995 * 109.47112 * 59.99086 * 15 13 12 42 42 H 1.08996 * 109.47042 * 299.99094 * 16 15 13 43 43 H 1.08995 * 109.47937 * 59.99597 * 16 15 13 44 44 H 0.96997 * 119.99801 * 179.97438 * 20 19 17 45 45 H 1.08002 * 119.97003 * 179.74423 * 25 10 9 46 46 H 1.07996 * 120.03881 * 180.25816 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1535 0.3921 -0.0015 6 7 4.2210 2.6097 -0.0013 7 6 5.6157 2.6122 -0.1132 8 6 6.2547 1.6400 -0.8717 9 6 7.6315 1.6450 -0.9798 10 6 8.3737 2.6168 -0.3342 11 6 9.8760 2.6188 -0.4539 12 7 10.2728 3.4292 -1.6080 13 6 11.5776 3.5749 -1.9124 14 8 12.4234 3.0356 -1.2306 15 6 11.9859 4.4090 -3.0993 16 6 13.5110 4.4109 -3.2209 17 6 13.9192 5.2446 -4.4082 18 1 13.1662 5.7245 -5.0155 19 6 15.2541 5.3944 -4.7190 20 7 16.1711 4.8095 -3.9797 21 14 15.7601 6.4270 -6.1911 22 1 15.9572 7.8354 -5.7635 23 1 17.0285 5.8985 -6.7541 24 1 14.6967 6.3682 -7.2260 25 6 7.7409 3.5833 0.4258 26 6 6.3640 3.5871 0.5335 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9564 -0.8899 34 1 3.7391 3.4479 0.0760 35 1 5.6754 0.8810 -1.3765 36 1 8.1290 0.8890 -1.5691 37 1 10.3121 3.0392 0.4524 38 1 10.2312 1.5971 -0.5879 39 1 9.5965 3.8603 -2.1535 40 1 11.5493 3.9893 -4.0057 41 1 11.6311 5.4308 -2.9647 42 1 13.9471 4.8309 -2.3145 43 1 13.8662 3.3893 -3.3553 44 1 17.1102 4.9146 -4.1987 45 1 8.3236 4.3386 0.9322 46 1 5.8700 4.3447 1.1238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292662286.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:34 Heat of formation + Delta-G solvation = -73.510672 kcal Electronic energy + Delta-G solvation = -24637.434250 eV Core-core repulsion = 20911.900957 eV Total energy + Delta-G solvation = -3725.533293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99060 -39.45624 -38.65004 -35.78227 -34.88684 -34.06300 -33.40606 -31.24339 -31.20901 -30.43039 -28.51427 -26.36429 -24.92619 -23.38857 -22.72864 -21.69180 -21.20040 -20.63191 -19.62036 -18.21851 -17.45995 -16.97684 -16.51850 -16.10525 -15.58625 -15.54951 -15.04596 -14.99267 -14.78248 -14.41638 -14.38489 -13.89747 -13.70781 -13.66440 -13.20539 -12.99584 -12.86170 -12.57978 -12.30258 -12.15578 -11.90891 -11.75358 -11.69407 -11.43913 -11.27783 -11.12539 -10.90625 -10.72376 -10.57519 -10.25422 -9.91974 -9.63268 -9.19639 -9.16574 -9.02028 -8.73547 -8.35614 -8.29202 -5.93395 -3.97690 0.87531 1.16076 2.12772 2.55364 3.30916 3.35080 3.37098 3.41286 3.43978 3.90693 4.09571 4.30496 4.43198 4.50144 4.58159 4.61821 4.73769 4.84265 4.92781 5.03695 5.11580 5.15716 5.19643 5.24576 5.41494 5.53239 5.54357 5.58246 5.61155 5.78940 5.80911 5.89427 5.97715 5.99589 6.18496 6.26973 6.29181 6.43301 6.71164 6.76601 6.89597 6.93800 7.63414 7.77541 7.90147 7.94863 8.10560 8.41906 8.83068 9.11143 9.65679 11.17572 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031321 B = 0.001670 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.751077 B =16760.925353 C =17078.646024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.510 3.490 5 O -0.517 6.517 6 N -0.676 5.676 7 C 0.146 3.854 8 C -0.122 4.122 9 C -0.081 4.081 10 C -0.115 4.115 11 C 0.161 3.839 12 N -0.740 5.740 13 C 0.509 3.491 14 O -0.535 6.535 15 C -0.129 4.129 16 C 0.036 3.964 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.081 4.081 26 C -0.148 4.148 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.398 0.602 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.130 0.870 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.368 -4.268 9.831 36.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.298 3.702 5 O -0.391 6.391 6 N -0.322 5.322 7 C 0.052 3.948 8 C -0.142 4.142 9 C -0.100 4.100 10 C -0.116 4.116 11 C 0.037 3.963 12 N -0.394 5.394 13 C 0.297 3.703 14 O -0.411 6.411 15 C -0.169 4.169 16 C -0.001 4.001 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.100 4.100 26 C -0.168 4.168 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.246 0.754 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.231 0.769 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -33.160 -5.489 10.341 35.166 hybrid contribution -0.312 1.276 -0.926 1.607 sum -33.472 -4.213 9.415 35.025 Atomic orbital electron populations 1.21793 0.95220 1.02219 1.01841 1.21305 0.95515 0.94292 1.03806 1.21749 0.90620 1.00798 1.04763 1.21022 0.90714 0.83215 0.75285 1.90751 1.70254 1.31092 1.47004 1.43623 1.05377 1.09922 1.73247 1.17770 0.82487 0.97464 0.97058 1.21103 0.94715 0.99471 0.98955 1.21032 0.93123 0.97826 0.97990 1.19973 0.95467 0.96509 0.99623 1.20085 0.89095 0.96776 0.90323 1.46280 1.08225 1.53751 1.31189 1.21587 0.81044 0.80923 0.86707 1.90674 1.50379 1.47888 1.52110 1.21864 1.03166 0.98191 0.93722 1.18903 0.86050 0.97997 0.97171 1.21234 0.91968 1.31012 1.12318 0.92617 1.25023 0.96767 0.95890 0.96694 1.70000 1.00601 1.43424 1.38805 0.86595 0.78022 0.80427 0.82910 1.20699 1.21230 1.19914 1.20922 0.93584 0.97782 0.97710 1.20851 0.94050 1.00483 1.01416 0.92630 0.92584 0.92217 0.91054 0.91090 0.88590 0.88436 0.75351 0.84831 0.85326 0.90988 0.90981 0.76867 0.90267 0.90276 0.95811 0.95799 0.92976 0.85252 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.16 0.37 -0.17 16 2 C -0.11 -0.57 5.22 -26.73 -0.14 -0.71 16 3 C -0.14 -0.54 5.70 -27.88 -0.16 -0.70 16 4 C 0.51 3.84 7.57 -10.98 -0.08 3.75 16 5 O -0.52 -6.06 13.67 5.55 0.08 -5.98 16 6 N -0.68 -4.27 5.34 -9.86 -0.05 -4.32 16 7 C 0.15 1.32 6.28 -83.69 -0.53 0.79 16 8 C -0.12 -1.30 8.66 -39.39 -0.34 -1.64 16 9 C -0.08 -0.86 9.69 -39.61 -0.38 -1.24 16 10 C -0.11 -1.23 5.25 -104.59 -0.55 -1.78 16 11 C 0.16 2.09 5.80 -5.19 -0.03 2.06 16 12 N -0.74 -10.64 5.55 -61.47 -0.34 -10.98 16 13 C 0.51 9.95 7.83 -10.98 -0.09 9.86 16 14 O -0.54 -12.85 15.98 5.55 0.09 -12.76 16 15 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 17 C -0.53 -15.11 9.11 -34.43 -0.31 -15.42 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.08 -0.76 9.69 -39.61 -0.38 -1.14 16 26 C -0.15 -1.21 9.96 -39.39 -0.39 -1.60 16 27 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.41 1.14 8.82 -40.82 -0.36 0.78 16 35 H 0.13 1.50 6.41 -52.49 -0.34 1.17 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.40 4.68 8.46 -40.82 -0.35 4.34 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -37.06 390.19 -9.36 -46.42 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.33 Total: 0.17 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.39 Total: -8.29 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.34 Total: -42.24 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.16 Total: -18.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.06 -9.36 -46.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292662286.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.090 kcal (2) G-P(sol) polarization free energy of solvation -37.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds