Wall clock time and date at job start Tue Mar 31 2020 13:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 119.99886 * 2 1 4 4 N 1.46493 * 109.47088 * 125.00122 * 3 2 1 5 5 C 1.46505 * 120.00003 * 262.36282 * 4 3 2 6 6 C 1.50696 * 109.47160 * 270.00508 * 5 4 3 7 7 H 1.07994 * 120.00137 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00052 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46996 * 60.00258 * 10 8 6 12 12 H 1.48506 * 109.47001 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47256 * 299.99777 * 10 8 6 14 14 C 1.34773 * 120.00356 * 82.36846 * 4 3 2 15 15 O 1.21550 * 120.00232 * 181.48030 * 14 4 3 16 16 C 1.47928 * 120.00075 * 1.47113 * 14 4 3 17 17 C 1.39468 * 119.65865 * 173.73929 * 16 14 4 18 18 C 1.38318 * 119.13050 * 179.97438 * 17 16 14 19 19 C 1.39234 * 118.44726 * 359.97438 * 18 17 16 20 20 O 1.35722 * 120.38380 * 180.02562 * 19 18 17 21 21 C 1.42893 * 117.00233 * 174.04359 * 20 19 18 22 22 C 1.53006 * 109.47286 * 62.15204 * 21 20 19 23 23 C 1.52999 * 109.47478 * 182.15120 * 21 20 19 24 24 C 1.52998 * 109.47530 * 302.15370 * 21 20 19 25 25 C 1.39238 * 119.23545 * 0.02562 * 19 18 17 26 26 N 1.31377 * 120.80374 * 0.02562 * 25 19 18 27 27 H 1.08000 * 119.99845 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99993 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00592 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46979 * 4.99640 * 3 2 1 31 31 H 1.09001 * 109.46573 * 244.99834 * 3 2 1 32 32 H 1.09003 * 109.46834 * 30.00602 * 5 4 3 33 33 H 1.08997 * 109.46880 * 150.00230 * 5 4 3 34 34 H 0.96999 * 119.99917 * 179.97438 * 9 8 6 35 35 H 1.07994 * 120.43422 * 0.25566 * 17 16 14 36 36 H 1.08006 * 120.77908 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.46806 * 82.77410 * 22 21 20 38 38 H 1.08997 * 109.47317 * 202.78050 * 22 21 20 39 39 H 1.09002 * 109.46607 * 322.77936 * 22 21 20 40 40 H 1.09001 * 109.47113 * 59.99627 * 23 21 20 41 41 H 1.08996 * 109.47371 * 180.02562 * 23 21 20 42 42 H 1.09006 * 109.46896 * 300.00079 * 23 21 20 43 43 H 1.09007 * 109.46845 * 45.07266 * 24 21 20 44 44 H 1.08995 * 109.47473 * 165.07794 * 24 21 20 45 45 H 1.08997 * 109.46926 * 285.07959 * 24 21 20 46 46 H 1.07990 * 119.59736 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6184 2.0142 2.3723 6 6 3.0541 3.4552 2.3050 7 1 3.5604 3.8257 1.4260 8 6 2.8064 4.3006 3.3656 9 7 2.1894 3.8495 4.4359 10 14 3.3472 6.0867 3.2824 11 1 2.6847 6.7513 2.1316 12 1 2.9655 6.7786 4.5398 13 1 4.8207 6.1502 3.1097 14 6 4.1949 0.7292 1.0306 15 8 4.9559 0.7282 1.9785 16 6 4.5872 0.0685 -0.2334 17 6 5.8789 -0.4381 -0.3754 18 6 6.2339 -1.0543 -1.5618 19 6 5.2811 -1.1450 -2.5730 20 8 5.5870 -1.7421 -3.7528 21 6 4.5211 -1.9127 -4.6891 22 6 3.9780 -0.5423 -5.0991 23 6 5.0419 -2.6460 -5.9269 24 6 3.4019 -2.7326 -4.0441 25 6 4.0108 -0.6162 -2.3599 26 7 3.7058 -0.0361 -1.2212 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.5368 1.9672 2.4999 33 1 3.1053 1.5264 3.2167 34 1 2.0155 4.4442 5.1822 35 1 6.5911 -0.3545 0.4321 36 1 7.2267 -1.4563 -1.7003 37 1 4.6044 -0.1243 -5.8872 38 1 2.9572 -0.6507 -5.4654 39 1 3.9858 0.1243 -4.2368 40 1 5.4289 -3.6222 -5.6348 41 1 4.2290 -2.7757 -6.6412 42 1 5.8393 -2.0618 -6.3865 43 1 3.2128 -2.3601 -3.0372 44 1 2.4946 -2.6421 -4.6414 45 1 3.7010 -3.7795 -3.9940 46 1 3.2674 -0.6831 -3.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293613152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:02 Heat of formation + Delta-G solvation = 19.383965 kcal Electronic energy + Delta-G solvation = -27298.996272 eV Core-core repulsion = 23577.491193 eV Total energy + Delta-G solvation = -3721.505079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38396 -39.58842 -37.88521 -35.66299 -34.66668 -33.11482 -32.20421 -31.89960 -30.82184 -28.01407 -27.85265 -27.37220 -25.46347 -24.24765 -23.65176 -22.46046 -20.83080 -19.96757 -19.03760 -17.57538 -17.38688 -16.84756 -16.41711 -15.75278 -15.34723 -15.16493 -14.86904 -14.57228 -14.45543 -14.34415 -14.08302 -13.71816 -13.36589 -13.20672 -12.88324 -12.80104 -12.62109 -12.53770 -12.38142 -12.16338 -12.03635 -11.83319 -11.38549 -11.23196 -11.16293 -11.01974 -10.90290 -10.76969 -10.52265 -10.15404 -9.77352 -9.69848 -9.48142 -9.00996 -8.69356 -8.42351 -8.38511 -7.58660 -5.99978 -4.04792 0.84760 1.16331 2.70490 2.78513 3.21264 3.35342 3.39160 3.42785 3.91108 4.15472 4.23089 4.32263 4.34731 4.46524 4.48154 4.52644 4.91004 4.99345 5.08900 5.09254 5.13493 5.23871 5.30078 5.33825 5.38942 5.42156 5.50803 5.60193 5.65092 5.67733 5.73430 5.80423 5.84724 5.99823 6.08998 6.31790 6.37008 6.62822 7.03119 7.05135 7.10636 7.22053 7.48902 7.60812 7.79854 7.97091 8.27229 8.45216 8.91538 9.08854 9.59808 11.08031 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.003333 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.611281 B = 8399.981569 C = 8840.266074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C 0.134 3.866 4 N -0.570 5.570 5 C 0.245 3.755 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.557 3.443 15 O -0.538 6.538 16 C 0.051 3.949 17 C -0.074 4.074 18 C -0.121 4.121 19 C 0.094 3.906 20 O -0.301 6.301 21 C 0.105 3.895 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.199 4.199 25 C -0.006 4.006 26 N -0.411 5.411 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 -13.695 -21.493 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.148 4.148 3 C 0.010 3.990 4 N -0.299 5.299 5 C 0.126 3.874 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.343 3.657 15 O -0.416 6.416 16 C -0.087 4.087 17 C -0.095 4.095 18 C -0.147 4.147 19 C 0.046 3.954 20 O -0.213 6.213 21 C 0.068 3.932 22 C -0.260 4.260 23 C -0.193 4.193 24 C -0.256 4.256 25 C -0.166 4.166 26 N -0.123 5.123 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.681 -13.337 -20.705 24.686 hybrid contribution 0.824 0.633 -0.235 1.066 sum 2.505 -12.703 -20.940 24.620 Atomic orbital electron populations 1.23712 0.95894 1.01216 1.03771 1.23252 0.95422 0.99200 0.96900 1.21003 0.92603 0.94326 0.91049 1.48108 1.14088 1.51102 1.16601 1.19366 0.96098 0.91552 0.80374 1.21396 1.38239 0.94487 1.02405 0.92453 1.24925 0.95103 0.98908 0.95094 1.69929 1.41509 1.35992 1.05904 0.86557 0.79227 0.84413 0.77219 1.20252 1.21188 1.20172 1.17691 0.82707 0.79628 0.85707 1.90760 1.51464 1.61062 1.38281 1.21562 0.91457 1.00862 0.94830 1.21989 0.96712 0.93625 0.97132 1.20880 0.99988 1.02394 0.91467 1.20199 0.94948 0.93727 0.86539 1.86107 1.37321 1.74189 1.23729 1.21893 0.86680 0.95779 0.88849 1.22964 1.02409 0.96784 1.03801 1.21812 1.02112 1.00630 0.94771 1.22868 0.98495 1.01232 1.02974 1.23837 0.95362 0.99893 0.97483 1.68263 1.33703 1.10809 0.99553 0.88657 0.89319 0.88323 0.90678 0.87534 0.94694 0.93729 0.92678 0.82862 0.83741 0.91183 0.90431 0.89810 0.91448 0.90218 0.91405 0.90136 0.90465 0.91320 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.01 14.32 29.02 0.42 -2.59 16 2 C -0.13 -2.08 8.61 -36.02 -0.31 -2.39 16 3 C 0.13 2.47 5.46 -5.19 -0.03 2.44 16 4 N -0.57 -12.95 2.46 -177.52 -0.44 -13.39 16 5 C 0.24 6.63 5.14 -5.19 -0.03 6.60 16 6 C -0.53 -15.25 9.39 -34.44 -0.32 -15.58 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.56 12.47 7.58 -12.29 -0.09 12.37 16 15 O -0.54 -13.86 15.90 5.32 0.08 -13.78 16 16 C 0.05 0.90 6.61 -83.02 -0.55 0.35 16 17 C -0.07 -1.10 9.62 -39.09 -0.38 -1.48 16 18 C -0.12 -1.48 10.12 -39.18 -0.40 -1.88 16 19 C 0.09 1.11 6.02 -38.84 -0.23 0.88 16 20 O -0.30 -3.14 9.79 -18.87 -0.18 -3.33 16 21 C 0.11 0.81 1.11 -90.62 -0.10 0.70 16 22 C -0.20 -1.43 8.06 37.16 0.30 -1.13 16 23 C -0.14 -0.78 8.68 37.16 0.32 -0.45 16 24 C -0.20 -1.41 8.13 37.16 0.30 -1.11 16 25 C -0.01 -0.07 6.90 -17.37 -0.12 -0.19 16 26 N -0.41 -6.23 4.47 -9.68 -0.04 -6.28 16 27 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.10 1.61 7.38 -52.49 -0.39 1.22 16 30 H 0.07 1.42 7.67 -51.93 -0.40 1.02 16 31 H 0.11 1.85 5.39 -51.93 -0.28 1.57 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.04 1.35 7.40 -51.93 -0.38 0.96 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.15 2.25 7.65 -52.49 -0.40 1.84 16 36 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 38 H 0.08 0.42 7.70 -51.93 -0.40 0.02 16 39 H 0.08 0.73 4.72 -51.93 -0.25 0.49 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 43 H 0.08 0.71 4.76 -51.92 -0.25 0.46 16 44 H 0.08 0.41 7.77 -51.93 -0.40 0.01 16 45 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 46 H 0.18 1.74 3.72 -52.49 -0.20 1.55 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -33.32 370.63 -7.25 -40.58 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.66 Total: 1.43 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.31 Total: -1.76 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.26 Total: -45.86 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.10 Total: -17.10 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.32 -7.25 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293613152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.961 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds