Wall clock time and date at job start Tue Mar 31 2020 13:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47156 * 2 1 4 4 H 1.09002 * 109.58425 * 62.11927 * 3 2 1 5 5 C 1.53162 * 109.58973 * 301.69051 * 3 2 1 6 6 C 1.53040 * 109.33030 * 185.56685 * 5 3 2 7 7 C 1.53038 * 109.52368 * 61.36900 * 6 5 3 8 8 C 1.53198 * 109.31582 * 298.64328 * 7 6 5 9 9 N 1.46917 * 109.58970 * 182.40647 * 3 2 1 10 10 C 1.34776 * 120.62777 * 353.41870 * 9 3 2 11 11 O 1.21579 * 120.00446 * 354.18619 * 10 9 3 12 12 N 1.34782 * 119.99969 * 174.18661 * 10 9 3 13 13 C 1.39941 * 120.00175 * 174.54733 * 12 10 9 14 14 C 1.38961 * 120.03349 * 152.18419 * 13 12 10 15 15 C 1.38160 * 120.06143 * 179.97438 * 14 13 12 16 16 C 1.38169 * 120.14238 * 0.02562 * 15 14 13 17 17 C 1.38908 * 120.06917 * 359.97438 * 16 15 14 18 18 O 1.35747 * 120.03336 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99946 * 6.14572 * 18 17 16 20 20 H 1.07995 * 119.99825 * 5.62688 * 19 18 17 21 21 C 1.38654 * 119.99817 * 185.62369 * 19 18 17 22 22 N 1.31555 * 120.00090 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00116 * 0.02562 * 21 19 18 24 24 H 1.48510 * 109.47044 * 89.99758 * 23 21 19 25 25 H 1.48494 * 109.47239 * 209.99778 * 23 21 19 26 26 H 1.48503 * 109.47031 * 329.99962 * 23 21 19 27 27 C 1.38705 * 120.03347 * 331.89927 * 13 12 10 28 28 H 1.09002 * 109.47191 * 305.15683 * 1 2 3 29 29 H 1.09000 * 109.47339 * 65.15921 * 1 2 3 30 30 H 1.09004 * 109.47045 * 185.15528 * 1 2 3 31 31 H 1.09004 * 109.47501 * 240.00535 * 2 1 3 32 32 H 1.08999 * 109.47386 * 120.00261 * 2 1 3 33 33 H 1.09006 * 109.48275 * 65.61948 * 5 3 2 34 34 H 1.09002 * 109.50197 * 305.52865 * 5 3 2 35 35 H 1.09005 * 109.45671 * 301.36090 * 6 5 3 36 36 H 1.08997 * 109.46651 * 181.38622 * 6 5 3 37 37 H 1.09001 * 109.49916 * 58.59714 * 7 6 5 38 38 H 1.09005 * 109.49910 * 178.69474 * 7 6 5 39 39 H 1.09000 * 109.58857 * 174.42193 * 8 7 6 40 40 H 1.08999 * 109.58669 * 294.85048 * 8 7 6 41 41 H 0.97009 * 119.99518 * 354.54401 * 12 10 9 42 42 H 1.07994 * 119.96681 * 359.97438 * 14 13 12 43 43 H 1.08003 * 119.92572 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.96554 * 179.97438 * 16 15 14 45 45 H 0.96998 * 120.00229 * 179.97438 * 22 21 19 46 46 H 1.08004 * 120.06771 * 0.03220 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7090 1.9471 0.9078 5 6 1.4965 2.1794 -1.2278 6 6 2.1192 3.5757 -1.2975 7 6 3.6377 3.4518 -1.4416 8 6 4.2058 2.7293 -0.2160 9 7 3.5080 1.4460 -0.0581 10 6 4.2014 0.2938 0.0313 11 8 3.6211 -0.7483 0.2670 12 7 5.5382 0.2966 -0.1405 13 6 6.2726 -0.8768 0.0644 14 6 7.4647 -1.0798 -0.6202 15 6 8.1905 -2.2379 -0.4179 16 6 7.7336 -3.1977 0.4646 17 6 6.5427 -3.0007 1.1520 18 8 6.0948 -3.9441 2.0193 19 6 6.9124 -4.9878 2.2644 20 1 7.9100 -5.0010 1.8509 21 6 6.4723 -6.0442 3.0472 22 7 7.2698 -7.0629 3.2860 23 14 4.7466 -6.0217 3.7619 24 1 3.8070 -6.6628 2.8070 25 1 4.7327 -6.7674 5.0459 26 1 4.3279 -4.6170 4.0006 27 6 5.8143 -1.8359 0.9555 28 1 -0.3634 0.5918 0.8402 29 1 -0.3634 0.4317 -0.9326 30 1 -0.3633 -1.0235 0.0923 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4129 2.2679 -1.1486 34 1 1.7515 1.6220 -2.1292 35 1 1.8845 4.1238 -0.3849 36 1 1.7153 4.1110 -2.1567 37 1 3.8726 2.8824 -2.3409 38 1 4.0786 4.4461 -1.5144 39 1 5.2716 2.5506 -0.3585 40 1 4.0514 3.3410 0.6729 41 1 5.9913 1.1122 -0.4063 42 1 7.8242 -0.3315 -1.3110 43 1 9.1170 -2.3931 -0.9509 44 1 8.3030 -4.1022 0.6203 45 1 6.9621 -7.8017 3.8339 46 1 4.8902 -1.6786 1.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298707200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:06 Heat of formation + Delta-G solvation = -11.664479 kcal Electronic energy + Delta-G solvation = -27177.478420 eV Core-core repulsion = 23454.626979 eV Total energy + Delta-G solvation = -3722.851441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02546 -39.16757 -37.95198 -36.53799 -35.01465 -33.42670 -32.94062 -32.30223 -29.61706 -29.54446 -28.47146 -25.44860 -25.08373 -24.38820 -22.52371 -21.74629 -21.24631 -20.73020 -19.61083 -18.13799 -17.84632 -17.26063 -16.29709 -15.66207 -15.16665 -14.95022 -14.88062 -14.77675 -14.52323 -14.38660 -13.87751 -13.78581 -13.69157 -13.36882 -13.27133 -12.90624 -12.71951 -12.36740 -12.22240 -12.08856 -11.89365 -11.71018 -11.44866 -11.24572 -11.09218 -10.96434 -10.88537 -10.81923 -10.70778 -10.68284 -10.13735 -9.75505 -9.42990 -8.94568 -8.79748 -8.69282 -7.66306 -7.21865 -6.35126 -4.01236 2.07149 2.30276 2.53966 3.27165 3.29796 3.34795 3.50482 3.73122 4.32207 4.39463 4.46893 4.50995 4.59967 4.72625 4.91756 4.95460 5.01897 5.13063 5.16326 5.21833 5.32048 5.44513 5.49377 5.52554 5.57708 5.61329 5.65192 5.70768 5.77774 5.78276 5.97975 6.07524 6.13188 6.16992 6.26661 6.36156 6.41260 6.44755 6.75407 6.81335 7.00107 7.13652 7.20742 7.40961 7.67566 7.87509 7.95976 8.10543 8.65681 9.00975 9.65459 10.72527 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003582 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.325104 B = 7815.521229 C = 9307.543560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.166 3.834 4 H 0.069 0.931 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.110 3.890 9 N -0.627 5.627 10 C 0.702 3.298 11 O -0.552 6.552 12 N -0.682 5.682 13 C 0.196 3.804 14 C -0.234 4.234 15 C -0.057 4.057 16 C -0.237 4.237 17 C 0.176 3.824 18 O -0.214 6.214 19 C -0.387 4.387 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.881 5.881 23 Si 0.903 3.097 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.258 1.258 27 C -0.194 4.194 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.133 0.867 45 H 0.279 0.721 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 23.139 -9.382 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C 0.063 3.937 4 H 0.087 0.913 5 C -0.172 4.172 6 C -0.157 4.157 7 C -0.175 4.175 8 C -0.013 4.013 9 N -0.366 5.366 10 C 0.405 3.595 11 O -0.427 6.427 12 N -0.331 5.331 13 C 0.102 3.898 14 C -0.255 4.255 15 C -0.076 4.076 16 C -0.257 4.257 17 C 0.123 3.877 18 O -0.119 6.119 19 C -0.463 4.463 20 H 0.124 0.876 21 C -0.139 4.139 22 N -0.519 5.519 23 Si 0.729 3.271 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.182 1.182 27 C -0.215 4.215 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.236 0.764 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.151 0.849 45 H 0.089 0.911 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.097 22.169 -8.938 25.576 hybrid contribution -0.204 0.367 0.018 0.421 sum -9.301 22.537 -8.921 25.961 Atomic orbital electron populations 1.21967 0.96939 1.01769 1.00888 1.22105 0.93559 0.93957 1.05950 1.21173 0.77232 0.97997 0.97319 0.91293 1.22071 1.00486 0.95849 0.98775 1.21513 0.95017 0.97081 1.02083 1.21941 0.96493 1.00694 0.98330 1.21644 0.96176 0.85018 0.98473 1.47380 1.06614 1.04843 1.77723 1.15950 0.81312 0.83879 0.78360 1.91008 1.66972 1.30658 1.54079 1.42860 1.05936 1.12321 1.71965 1.16972 0.91549 0.86135 0.95167 1.20240 0.98232 1.00742 1.06335 1.20520 0.98046 0.92614 0.96455 1.21281 0.99460 1.02194 1.02723 1.18881 0.91689 0.88776 0.88355 1.83604 1.43977 1.30387 1.53932 1.20776 0.96875 0.95993 1.32623 0.87610 1.24448 0.99450 0.93696 0.96334 1.69648 1.36585 1.07919 1.37793 0.86203 0.83083 0.79475 0.78347 1.19860 1.20853 1.18227 1.20183 1.03666 0.93910 1.03776 0.93186 0.93232 0.92518 0.91084 0.88410 0.90500 0.91451 0.91765 0.91709 0.91369 0.90706 0.90538 0.91107 0.76387 0.87403 0.86836 0.84933 0.91129 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.36 37.16 0.35 -1.27 16 2 C -0.12 -1.53 3.90 -26.73 -0.10 -1.63 16 3 C 0.17 1.74 3.04 -67.62 -0.21 1.54 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.13 -1.07 4.79 -26.63 -0.13 -1.20 16 6 C -0.12 -0.75 5.89 -26.69 -0.16 -0.91 16 7 C -0.14 -0.84 6.08 -26.61 -0.16 -1.00 16 8 C 0.11 0.84 6.43 -3.71 -0.02 0.82 16 9 N -0.63 -7.11 2.97 -170.92 -0.51 -7.62 16 10 C 0.70 10.79 7.91 -86.91 -0.69 10.10 16 11 O -0.55 -10.61 9.25 5.30 0.05 -10.57 16 12 N -0.68 -9.83 5.25 -14.24 -0.07 -9.90 16 13 C 0.20 3.58 6.37 -83.71 -0.53 3.05 16 14 C -0.23 -3.94 9.95 -39.34 -0.39 -4.33 16 15 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 16 C -0.24 -5.26 9.13 -39.36 -0.36 -5.62 16 17 C 0.18 4.32 6.64 -39.13 -0.26 4.06 16 18 O -0.21 -5.98 8.58 0.05 0.00 -5.98 16 19 C -0.39 -11.27 9.89 30.89 0.31 -10.96 16 20 H 0.11 3.11 5.54 -52.49 -0.29 2.82 16 21 C 0.06 1.84 5.49 -17.52 -0.10 1.75 16 22 N -0.88 -26.05 13.96 55.48 0.77 -25.27 16 23 Si 0.90 22.70 28.62 -169.99 -4.86 17.83 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.19 -4.30 8.63 -39.21 -0.34 -4.64 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.44 6.83 -51.93 -0.35 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.08 7.20 -51.93 -0.37 0.70 16 32 H 0.10 1.58 6.27 -51.93 -0.33 1.25 16 33 H 0.08 0.54 6.86 -51.93 -0.36 0.18 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.50 5.59 -51.93 -0.29 0.21 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.40 4.22 6.30 -40.82 -0.26 3.97 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.13 3.07 5.72 -52.49 -0.30 2.77 16 45 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.14 3.22 6.02 -52.48 -0.32 2.90 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -32.62 357.53 -9.08 -41.69 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.65 Total: 6.13 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.19 Total: -11.70 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.19 Total: -42.79 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.05 Total: -16.54 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.86 Total: 17.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.62 -9.08 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298707200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.027 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds