Wall clock time and date at job start Tue Mar 31 2020 12:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 O 1.42895 * 109.47354 * 120.00037 * 2 1 3 5 5 C 1.52996 * 109.47303 * 240.00084 * 2 1 3 6 6 H 1.09000 * 109.87332 * 291.47316 * 5 2 1 7 7 C 1.54333 * 109.88146 * 52.48525 * 5 2 1 8 8 C 1.55157 * 102.93933 * 141.61252 * 7 5 2 9 9 C 1.54908 * 101.58624 * 324.49748 * 8 7 5 10 10 N 1.47022 * 109.88818 * 170.29309 * 5 2 1 11 11 C 1.34778 * 125.64425 * 61.61843 * 10 5 2 12 12 O 1.21586 * 120.00008 * 357.11351 * 11 10 5 13 13 N 1.34775 * 119.99766 * 177.10988 * 11 10 5 14 14 C 1.39244 * 119.99830 * 184.06577 * 13 11 10 15 15 C 1.39483 * 119.83441 * 212.59096 * 14 13 11 16 16 C 1.36367 * 120.17202 * 179.75730 * 15 14 13 17 17 C 1.40876 * 119.82729 * 0.51809 * 16 15 14 18 18 C 1.41148 * 120.16219 * 179.71841 * 17 16 15 19 19 H 1.08005 * 119.99829 * 204.25901 * 18 17 16 20 20 C 1.39892 * 120.00508 * 24.26433 * 18 17 16 21 21 N 1.30884 * 119.99896 * 15.65843 * 20 18 17 22 22 Si 1.86804 * 120.00293 * 195.66030 * 20 18 17 23 23 H 1.48492 * 109.47270 * 89.99448 * 22 20 18 24 24 H 1.48501 * 109.47302 * 210.00064 * 22 20 18 25 25 H 1.48501 * 109.46802 * 329.99745 * 22 20 18 26 26 C 1.40872 * 119.66875 * 359.73309 * 17 16 15 27 27 C 1.36374 * 119.83020 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.46828 * 302.00423 * 1 2 3 29 29 H 1.08995 * 109.47020 * 62.00868 * 1 2 3 30 30 H 1.09003 * 109.46627 * 182.00756 * 1 2 3 31 31 H 1.08995 * 109.47528 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46654 * 300.00205 * 3 2 1 33 33 H 1.08996 * 109.46969 * 59.99547 * 3 2 1 34 34 H 0.96702 * 114.00436 * 201.87033 * 4 2 1 35 35 H 1.08998 * 110.71636 * 259.97158 * 7 5 2 36 36 H 1.08992 * 110.71869 * 23.24947 * 7 5 2 37 37 H 1.08999 * 111.00485 * 82.57453 * 8 7 5 38 38 H 1.09002 * 110.99932 * 206.42221 * 8 7 5 39 39 H 1.08997 * 110.36808 * 155.85100 * 9 8 7 40 40 H 1.08995 * 110.36848 * 278.06540 * 9 8 7 41 41 H 0.96998 * 120.00043 * 4.06888 * 13 11 10 42 42 H 1.08002 * 119.91163 * 0.02562 * 15 14 13 43 43 H 1.08002 * 120.09058 * 180.25517 * 16 15 14 44 44 H 0.96998 * 120.00036 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.08300 * 180.02562 * 26 17 16 46 46 H 1.07996 * 119.91732 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.8098 -1.7846 -1.1831 7 6 1.3817 -0.1189 -2.5085 8 6 2.5388 -0.1254 -3.5422 9 6 3.7613 0.1846 -2.6428 10 7 3.4916 -0.5280 -1.3807 11 6 4.4216 -0.9345 -0.4939 12 8 4.0799 -1.4690 0.5433 13 7 5.7302 -0.7485 -0.7570 14 6 6.6935 -1.2436 0.1182 15 6 7.8964 -0.5578 0.2862 16 6 8.8425 -1.0337 1.1453 17 6 8.6070 -2.2272 1.8557 18 6 9.5838 -2.7295 2.7421 19 1 9.6064 -3.7827 2.9804 20 6 10.5226 -1.8631 3.3123 21 7 10.3239 -0.5699 3.2801 22 14 12.0600 -2.5520 4.1195 23 1 13.1429 -2.6613 3.1095 24 1 12.4930 -1.6460 5.2136 25 1 11.7660 -3.8965 4.6774 26 6 7.3918 -2.9171 1.6766 27 6 6.4532 -2.4261 0.8178 28 1 -0.3633 0.5446 0.8715 29 1 -0.3633 0.4823 -0.9074 30 1 -0.3633 -1.0271 0.0360 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.9104 -0.4374 1.4158 35 1 0.5568 -0.7447 -2.8491 36 1 1.0417 0.8986 -2.3166 37 1 2.6375 -1.1040 -4.0120 38 1 2.3975 0.6535 -4.2916 39 1 4.6755 -0.1908 -3.1025 40 1 3.8395 1.2572 -2.4655 41 1 6.0011 -0.2698 -1.5560 42 1 8.0771 0.3550 -0.2622 43 1 9.7717 -0.4994 1.2775 44 1 10.9747 0.0308 3.6758 45 1 7.2041 -3.8325 2.2182 46 1 5.5213 -2.9540 0.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305728331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:00 Heat of formation + Delta-G solvation = -47.574502 kcal Electronic energy + Delta-G solvation = -27528.375937 eV Core-core repulsion = 23803.967321 eV Total energy + Delta-G solvation = -3724.408616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77607 -38.70297 -37.02827 -36.46019 -34.38413 -33.02468 -32.21377 -31.31056 -29.53368 -28.78579 -28.23929 -27.28529 -25.13688 -23.62553 -22.02351 -21.53025 -20.88928 -19.88946 -18.75071 -18.01952 -17.29518 -17.13172 -16.44361 -15.69052 -15.21481 -15.08046 -14.98798 -14.35371 -13.98627 -13.90954 -13.47323 -13.21395 -12.97214 -12.67649 -12.64026 -12.28599 -12.27696 -12.20213 -12.04379 -11.83601 -11.76882 -11.52581 -11.46790 -11.24000 -11.10967 -11.04951 -10.98461 -10.72449 -10.49214 -10.03971 -9.71717 -9.56803 -9.44740 -9.14929 -8.89035 -8.39105 -7.50452 -6.92626 -6.69965 -4.26869 2.64942 2.85409 3.08115 3.11811 3.12624 3.16749 3.63060 3.95027 4.19937 4.31068 4.39509 4.59640 4.66372 4.76225 4.86738 4.99968 5.03958 5.16822 5.27491 5.39046 5.49182 5.51294 5.56498 5.69379 5.73317 5.75746 5.88920 5.92531 6.06006 6.10945 6.19380 6.21247 6.36881 6.48864 6.80839 6.92922 7.07052 7.16284 7.30836 7.41193 7.64895 7.89537 7.97124 8.07759 8.28267 8.32700 8.46302 8.64014 8.92237 8.95580 9.14402 10.20794 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.002946 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.295736 B = 9503.153813 C = 9887.777084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.119 3.881 3 C -0.176 4.176 4 O -0.555 6.555 5 C 0.137 3.863 6 H 0.078 0.922 7 C -0.128 4.128 8 C -0.131 4.131 9 C 0.097 3.903 10 N -0.636 5.636 11 C 0.708 3.292 12 O -0.559 6.559 13 N -0.661 5.661 14 C 0.010 3.990 15 C -0.116 4.116 16 C -0.153 4.153 17 C 0.103 3.897 18 C -0.456 4.456 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.795 5.795 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.214 4.214 27 C -0.077 4.077 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.387 0.613 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.390 0.610 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.280 0.720 45 H 0.094 0.906 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 5.857 -13.258 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 C -0.234 4.234 4 O -0.371 6.371 5 C 0.032 3.968 6 H 0.096 0.904 7 C -0.166 4.166 8 C -0.169 4.169 9 C -0.026 4.026 10 N -0.375 5.375 11 C 0.412 3.588 12 O -0.437 6.437 13 N -0.307 5.307 14 C -0.083 4.083 15 C -0.137 4.137 16 C -0.173 4.173 17 C 0.100 3.900 18 C -0.486 4.486 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.421 5.421 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.234 4.234 27 C -0.097 4.097 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.223 0.777 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.275 5.391 -12.350 19.630 hybrid contribution 1.441 0.428 -0.063 1.505 sum -12.833 5.819 -12.413 18.778 Atomic orbital electron populations 1.21821 0.93283 1.02705 1.01960 1.21366 0.94053 0.90647 0.86292 1.22507 1.01967 0.96827 1.02052 1.86480 1.37841 1.69228 1.43537 1.22080 0.79172 1.00468 0.95072 0.90381 1.22785 0.97893 1.02004 0.93961 1.22748 0.94214 1.02739 0.97191 1.22259 0.98791 0.96797 0.84773 1.47697 1.05895 1.61970 1.21986 1.15615 0.80542 0.79791 0.82874 1.90710 1.79250 1.48701 1.25071 1.42174 1.03218 1.59226 1.26042 1.16984 0.90688 0.97513 1.03102 1.20179 0.94545 0.98062 1.00884 1.20952 0.99480 0.99460 0.97383 1.17666 0.90710 0.91398 0.90228 1.19573 1.10527 0.95773 1.22725 0.90432 1.25921 0.98971 0.94506 0.95008 1.69840 1.33675 1.03505 1.35089 0.86283 0.81288 0.79958 0.79014 1.19344 1.20357 1.18626 1.20658 0.94891 1.03010 1.04850 1.20315 0.98297 0.93805 0.97288 0.92017 0.91505 0.91911 0.92234 0.91949 0.92146 0.75402 0.89935 0.90096 0.90523 0.89922 0.91017 0.91694 0.77689 0.89400 0.85778 0.90956 0.88767 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.53 37.16 0.32 -1.12 16 2 C 0.12 1.54 0.92 -90.62 -0.08 1.46 16 3 C -0.18 -2.05 8.16 37.16 0.30 -1.75 16 4 O -0.55 -9.91 11.71 -59.26 -0.69 -10.61 16 5 C 0.14 1.65 2.61 -66.95 -0.17 1.48 16 6 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 7 C -0.13 -0.99 5.10 -24.89 -0.13 -1.12 16 8 C -0.13 -0.92 7.08 -24.58 -0.17 -1.09 16 9 C 0.10 0.90 6.60 -2.53 -0.02 0.89 16 10 N -0.64 -8.46 2.04 -168.69 -0.34 -8.80 16 11 C 0.71 12.66 7.51 -86.92 -0.65 12.00 16 12 O -0.56 -12.05 9.98 -18.74 -0.19 -12.24 16 13 N -0.66 -11.83 5.27 -14.10 -0.07 -11.91 16 14 C 0.01 0.22 6.31 -83.57 -0.53 -0.31 16 15 C -0.12 -2.66 9.89 -39.79 -0.39 -3.05 16 16 C -0.15 -3.94 8.64 -39.26 -0.34 -4.27 16 17 C 0.10 2.77 5.59 -106.80 -0.60 2.17 16 18 C -0.46 -12.22 9.05 -37.86 -0.34 -12.56 16 19 H 0.08 2.00 7.89 -52.48 -0.41 1.59 16 20 C 0.07 1.84 5.19 -17.34 -0.09 1.75 16 21 N -0.80 -20.58 10.80 55.54 0.60 -19.98 16 22 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 26 C -0.21 -5.50 9.74 -39.26 -0.38 -5.89 16 27 C -0.08 -1.87 8.58 -39.79 -0.34 -2.21 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.80 7.06 -51.93 -0.37 0.44 16 32 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.39 7.60 5.70 45.43 0.26 7.86 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.55 5.53 -51.93 -0.29 0.26 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.63 7.25 -51.93 -0.38 0.25 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.39 5.66 7.27 -40.82 -0.30 5.36 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 3.28 6.04 -52.49 -0.32 2.96 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 45 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 46 H 0.11 2.57 6.31 -52.49 -0.33 2.24 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.52 355.85 -10.16 -40.68 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -6.17 Total: 17.38 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -3.62 Total: -13.62 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.18 Total: -40.69 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.88 Total: -22.84 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.52 -10.16 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305728331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.897 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds