Wall clock time and date at job start Tue Mar 31 2020 12:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 O 1.42895 * 109.47354 * 120.00037 * 2 1 3 5 5 C 1.52996 * 109.47303 * 240.00084 * 2 1 3 6 6 H 1.09000 * 109.87332 * 291.47316 * 5 2 1 7 7 C 1.54333 * 109.88146 * 52.48525 * 5 2 1 8 8 C 1.55157 * 102.93933 * 141.61252 * 7 5 2 9 9 C 1.54908 * 101.58624 * 324.49748 * 8 7 5 10 10 N 1.47022 * 109.88818 * 170.29309 * 5 2 1 11 11 C 1.34778 * 125.64425 * 61.61843 * 10 5 2 12 12 O 1.21586 * 120.00008 * 357.11351 * 11 10 5 13 13 N 1.34775 * 119.99766 * 177.10988 * 11 10 5 14 14 C 1.39244 * 119.99830 * 184.06577 * 13 11 10 15 15 C 1.39483 * 119.83441 * 212.59096 * 14 13 11 16 16 C 1.36367 * 120.17202 * 179.75730 * 15 14 13 17 17 C 1.40876 * 119.82729 * 0.51809 * 16 15 14 18 18 C 1.41148 * 120.16219 * 179.71841 * 17 16 15 19 19 H 1.08005 * 119.99829 * 204.25901 * 18 17 16 20 20 C 1.39892 * 120.00508 * 24.26433 * 18 17 16 21 21 N 1.30884 * 119.99896 * 15.65843 * 20 18 17 22 22 Si 1.86804 * 120.00293 * 195.66030 * 20 18 17 23 23 H 1.48492 * 109.47270 * 89.99448 * 22 20 18 24 24 H 1.48501 * 109.47302 * 210.00064 * 22 20 18 25 25 H 1.48501 * 109.46802 * 329.99745 * 22 20 18 26 26 C 1.40872 * 119.66875 * 359.73309 * 17 16 15 27 27 C 1.36374 * 119.83020 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.46828 * 302.00423 * 1 2 3 29 29 H 1.08995 * 109.47020 * 62.00868 * 1 2 3 30 30 H 1.09003 * 109.46627 * 182.00756 * 1 2 3 31 31 H 1.08995 * 109.47528 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46654 * 300.00205 * 3 2 1 33 33 H 1.08996 * 109.46969 * 59.99547 * 3 2 1 34 34 H 0.96702 * 114.00436 * 201.87033 * 4 2 1 35 35 H 1.08998 * 110.71636 * 259.97158 * 7 5 2 36 36 H 1.08992 * 110.71869 * 23.24947 * 7 5 2 37 37 H 1.08999 * 111.00485 * 82.57453 * 8 7 5 38 38 H 1.09002 * 110.99932 * 206.42221 * 8 7 5 39 39 H 1.08997 * 110.36808 * 155.85100 * 9 8 7 40 40 H 1.08995 * 110.36848 * 278.06540 * 9 8 7 41 41 H 0.96998 * 120.00043 * 4.06888 * 13 11 10 42 42 H 1.08002 * 119.91163 * 0.02562 * 15 14 13 43 43 H 1.08002 * 120.09058 * 180.25517 * 16 15 14 44 44 H 0.96998 * 120.00036 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.08300 * 180.02562 * 26 17 16 46 46 H 1.07996 * 119.91732 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 1 1.8098 -1.7846 -1.1831 7 6 1.3817 -0.1189 -2.5085 8 6 2.5388 -0.1254 -3.5422 9 6 3.7613 0.1846 -2.6428 10 7 3.4916 -0.5280 -1.3807 11 6 4.4216 -0.9345 -0.4939 12 8 4.0799 -1.4690 0.5433 13 7 5.7302 -0.7485 -0.7570 14 6 6.6935 -1.2436 0.1182 15 6 7.8964 -0.5578 0.2862 16 6 8.8425 -1.0337 1.1453 17 6 8.6070 -2.2272 1.8557 18 6 9.5838 -2.7295 2.7421 19 1 9.6064 -3.7827 2.9804 20 6 10.5226 -1.8631 3.3123 21 7 10.3239 -0.5699 3.2801 22 14 12.0600 -2.5520 4.1195 23 1 13.1429 -2.6613 3.1095 24 1 12.4930 -1.6460 5.2136 25 1 11.7660 -3.8965 4.6774 26 6 7.3918 -2.9171 1.6766 27 6 6.4532 -2.4261 0.8178 28 1 -0.3633 0.5446 0.8715 29 1 -0.3633 0.4823 -0.9074 30 1 -0.3633 -1.0271 0.0360 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.9104 -0.4374 1.4158 35 1 0.5568 -0.7447 -2.8491 36 1 1.0417 0.8986 -2.3166 37 1 2.6375 -1.1040 -4.0120 38 1 2.3975 0.6535 -4.2916 39 1 4.6755 -0.1908 -3.1025 40 1 3.8395 1.2572 -2.4655 41 1 6.0011 -0.2698 -1.5560 42 1 8.0771 0.3550 -0.2622 43 1 9.7717 -0.4994 1.2775 44 1 10.9747 0.0308 3.6758 45 1 7.2041 -3.8325 2.2182 46 1 5.5213 -2.9540 0.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305728331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:59 Heat of formation + Delta-G solvation = -65.454143 kcal Electronic energy + Delta-G solvation = -27529.151257 eV Core-core repulsion = 23803.967321 eV Total energy + Delta-G solvation = -3725.183936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96962 -40.14666 -38.70220 -37.53567 -36.11969 -34.74036 -33.37411 -32.32378 -31.44705 -30.55976 -29.13717 -28.17507 -26.85562 -24.82622 -23.31789 -22.76429 -22.59488 -21.21105 -20.01973 -19.36023 -19.11541 -18.22282 -17.93098 -17.06409 -16.85757 -16.28930 -16.13254 -15.71563 -15.57994 -14.98963 -14.79893 -14.55419 -14.32505 -14.03063 -13.91764 -13.67970 -13.60120 -13.21514 -13.15146 -13.07332 -12.96959 -12.89953 -12.76231 -12.71910 -12.47992 -12.43726 -12.05176 -11.79768 -11.74254 -11.47968 -11.38445 -11.20495 -10.96877 -10.79460 -10.63347 -9.54609 -9.44289 -8.79444 -8.57155 -6.26116 0.85335 1.15647 1.39450 1.47874 1.52840 1.64833 2.13891 2.22853 2.76769 3.09009 3.36545 3.61551 3.74424 3.78827 3.87017 4.05209 4.12301 4.20103 4.38663 4.41917 4.52762 4.54783 4.67055 4.72697 4.82118 4.85865 4.89583 4.94586 5.02017 5.07252 5.11213 5.14503 5.18189 5.21016 5.24249 5.33430 5.38499 5.46002 5.50220 5.66461 5.84332 6.05164 6.13505 6.22998 6.39186 6.66780 6.91025 6.94594 7.02867 7.04903 7.69915 8.34643 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.002946 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.295736 B = 9503.153813 C = 9887.777084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.103 3.897 3 C -0.167 4.167 4 O -0.584 6.584 5 C 0.131 3.869 6 H 0.049 0.951 7 C -0.118 4.118 8 C -0.120 4.120 9 C 0.085 3.915 10 N -0.628 5.628 11 C 0.703 3.297 12 O -0.601 6.601 13 N -0.655 5.655 14 C 0.030 3.970 15 C -0.113 4.113 16 C -0.169 4.169 17 C 0.073 3.927 18 C -0.495 4.495 19 H 0.072 0.928 20 C 0.034 3.966 21 N -0.825 5.825 22 Si 0.985 3.015 23 H -0.259 1.259 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.233 4.233 27 C -0.087 4.087 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.375 0.625 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.409 0.591 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.289 0.711 45 H 0.090 0.910 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 7.845 -15.900 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.061 3.939 3 C -0.225 4.225 4 O -0.399 6.399 5 C 0.027 3.973 6 H 0.067 0.933 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.037 4.037 10 N -0.366 5.366 11 C 0.406 3.594 12 O -0.482 6.482 13 N -0.303 5.303 14 C -0.064 4.064 15 C -0.134 4.134 16 C -0.189 4.189 17 C 0.070 3.930 18 C -0.525 4.525 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.451 5.451 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.253 4.253 27 C -0.108 4.108 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.246 0.754 42 H 0.140 0.860 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.312 7.415 -15.076 22.731 hybrid contribution 1.541 -0.140 0.652 1.680 sum -13.770 7.275 -14.424 21.227 Atomic orbital electron populations 1.21850 0.91102 1.02604 1.03737 1.21825 0.95731 0.91245 0.85066 1.22425 1.00433 0.96030 1.03570 1.86456 1.36846 1.70598 1.46031 1.22239 0.78654 0.99235 0.97213 0.93302 1.22828 0.98304 1.03037 0.91396 1.22766 0.92135 1.03886 0.96991 1.22659 1.00542 0.97321 0.83172 1.47685 1.05741 1.60857 1.22282 1.15788 0.80885 0.79595 0.83124 1.90700 1.79929 1.50408 1.27209 1.41931 1.02764 1.59436 1.26126 1.16980 0.91186 0.96164 1.02055 1.20423 0.93881 0.98887 1.00194 1.20964 1.00019 0.99455 0.98461 1.17967 0.91306 0.92472 0.91247 1.19786 1.12365 0.96000 1.24348 0.90977 1.26752 1.01570 0.94609 0.95125 1.69877 1.34886 1.04629 1.35727 0.85156 0.76921 0.79090 0.78226 1.18312 1.19197 1.18638 1.20760 0.95352 1.03341 1.05818 1.20362 0.97705 0.94846 0.97849 0.92367 0.87719 0.92829 0.94441 0.88458 0.92572 0.76872 0.88016 0.88055 0.90737 0.86545 0.90370 0.89914 0.75401 0.85978 0.86718 0.90068 0.89167 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.53 71.98 0.61 -1.91 16 2 C 0.10 2.57 0.92 -10.79 -0.01 2.56 16 3 C -0.17 -3.57 8.16 71.98 0.59 -2.98 16 4 O -0.58 -21.79 11.71 -126.00 -1.48 -23.27 16 5 C 0.13 2.97 2.61 45.34 0.12 3.08 16 6 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.12 -1.30 5.10 31.79 0.16 -1.14 16 8 C -0.12 -1.12 7.08 31.99 0.23 -0.89 16 9 C 0.08 1.28 6.60 86.85 0.57 1.85 16 10 N -0.63 -15.83 2.04 -805.88 -1.64 -17.47 16 11 C 0.70 25.16 7.51 179.05 1.34 26.51 16 12 O -0.60 -27.00 9.98 18.99 0.19 -26.81 16 13 N -0.65 -22.96 5.27 -316.78 -1.67 -24.63 16 14 C 0.03 1.36 6.31 38.56 0.24 1.60 16 15 C -0.11 -5.18 9.89 22.13 0.22 -4.96 16 16 C -0.17 -8.94 8.64 22.48 0.19 -8.74 16 17 C 0.07 4.10 5.59 -21.27 -0.12 3.99 16 18 C -0.50 -27.71 9.05 23.39 0.21 -27.50 16 19 H 0.07 3.93 7.89 -2.91 -0.02 3.91 16 20 C 0.03 1.74 5.19 85.23 0.44 2.18 16 21 N -0.82 -43.52 10.80 21.82 0.24 -43.29 16 22 Si 0.99 38.93 29.59 68.60 2.03 40.96 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 C -0.23 -12.64 9.74 22.48 0.22 -12.42 16 27 C -0.09 -4.42 8.58 22.13 0.19 -4.23 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.12 6.51 -2.39 -0.02 1.11 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.96 7.06 -2.39 -0.02 0.95 16 32 H 0.10 1.35 6.52 -2.38 -0.02 1.33 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.37 15.64 5.70 -76.16 -0.43 15.21 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.76 5.53 -2.39 -0.01 0.74 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.08 1.10 7.25 -2.39 -0.02 1.09 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.41 11.04 7.27 -92.71 -0.67 10.36 16 42 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.12 6.23 6.04 -2.91 -0.02 6.21 16 44 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 45 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.10 5.13 6.31 -2.91 -0.02 5.11 16 Total: -1.00 -72.15 355.85 2.78 -69.36 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.10 Total: 48.15 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.22 Total: -23.00 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.08 Total: -85.39 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.29 Total: -50.07 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -72.15 2.78 -69.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305728331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.908 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds