Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 O 1.42894 * 109.47144 * 239.99901 * 2 1 3 5 5 C 1.53004 * 109.46673 * 120.00094 * 2 1 3 6 6 H 1.08998 * 109.99963 * 66.62169 * 5 2 1 7 7 C 1.54322 * 109.88139 * 305.52309 * 5 2 1 8 8 C 1.55159 * 102.94304 * 218.39221 * 7 5 2 9 9 C 1.54690 * 101.67573 * 35.33721 * 8 7 5 10 10 N 1.47020 * 109.88146 * 187.71849 * 5 2 1 11 11 C 1.34782 * 125.64608 * 298.32108 * 10 5 2 12 12 O 1.21581 * 119.99991 * 4.40322 * 11 10 5 13 13 N 1.34775 * 119.99844 * 184.12869 * 11 10 5 14 14 C 1.39954 * 119.99741 * 174.98495 * 13 11 10 15 15 C 1.39286 * 119.94549 * 145.41242 * 14 13 11 16 16 C 1.38495 * 120.43163 * 179.97438 * 15 14 13 17 17 C 1.37685 * 120.31634 * 359.97438 * 16 15 14 18 18 C 1.40743 * 119.88528 * 0.02562 * 17 16 15 19 19 C 1.41403 * 120.21084 * 179.97438 * 18 17 16 20 20 H 1.08007 * 120.00078 * 146.63291 * 19 18 17 21 21 C 1.39936 * 120.00293 * 326.63710 * 19 18 17 22 22 N 1.30834 * 119.99453 * 0.84204 * 21 19 18 23 23 Si 1.86793 * 120.00280 * 180.84594 * 21 19 18 24 24 H 1.48503 * 109.47372 * 89.99873 * 23 21 19 25 25 H 1.48502 * 109.47129 * 209.99810 * 23 21 19 26 26 H 1.48500 * 109.47320 * 329.99631 * 23 21 19 27 27 C 1.38237 * 119.94709 * 325.12763 * 14 13 11 28 28 H 1.08998 * 109.46978 * 305.45347 * 1 2 3 29 29 H 1.08999 * 109.46810 * 65.44431 * 1 2 3 30 30 H 1.08996 * 109.47183 * 185.45069 * 1 2 3 31 31 H 1.09005 * 109.46802 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47368 * 299.99944 * 3 2 1 33 33 H 1.09008 * 109.46960 * 60.00262 * 3 2 1 34 34 H 0.96704 * 113.99713 * 300.00316 * 4 2 1 35 35 H 1.08998 * 110.72438 * 336.75953 * 7 5 2 36 36 H 1.09003 * 110.71961 * 100.02922 * 7 5 2 37 37 H 1.08995 * 111.00363 * 153.57973 * 8 7 5 38 38 H 1.09002 * 111.00213 * 277.42708 * 8 7 5 39 39 H 1.09002 * 110.39012 * 204.36366 * 9 8 7 40 40 H 1.09000 * 110.23359 * 82.11463 * 9 8 7 41 41 H 0.97008 * 120.00015 * 354.98084 * 13 11 10 42 42 H 1.08001 * 119.78748 * 359.97305 * 15 14 13 43 43 H 1.07997 * 119.84297 * 180.02562 * 16 15 14 44 44 H 1.07995 * 120.05803 * 180.02562 * 17 16 15 45 45 H 0.97002 * 119.99538 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.15595 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.7810 -1.7790 1.2009 7 6 1.4198 -0.0863 2.5118 8 6 2.5931 -0.1139 3.5267 9 6 3.8091 0.1462 2.6067 10 7 3.4983 -0.5679 1.3550 11 6 4.4018 -1.0117 0.4587 12 8 4.0280 -1.5242 -0.5786 13 7 5.7196 -0.8824 0.7097 14 6 6.6571 -1.4361 -0.1696 15 6 7.8710 -0.7894 -0.3892 16 6 8.8062 -1.3285 -1.2569 17 6 8.5458 -2.5112 -1.9120 18 6 7.3234 -3.1759 -1.7000 19 6 7.0486 -4.3906 -2.3697 20 1 6.4571 -5.1529 -1.8844 21 6 7.5429 -4.6050 -3.6611 22 7 8.2733 -3.6883 -4.2425 23 14 7.1600 -6.1999 -4.5549 24 1 5.9032 -6.0436 -5.3302 25 1 8.2744 -6.5289 -5.4797 26 1 6.9982 -7.2954 -3.5654 27 6 6.3792 -2.6269 -0.8144 28 1 -0.3633 0.5961 0.8371 29 1 -0.3633 0.4271 -0.9347 30 1 -0.3633 -1.0230 0.0976 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.7210 -1.5952 -1.2328 35 1 1.1054 0.9383 2.3135 36 1 0.5832 -0.6844 2.8730 37 1 2.4862 0.6770 4.2690 38 1 2.6718 -1.0896 4.0064 39 1 4.7179 -0.2541 3.0562 40 1 3.9171 1.2142 2.4175 41 1 6.0183 -0.4055 1.4999 42 1 8.0845 0.1386 0.1204 43 1 9.7445 -0.8193 -1.4198 44 1 9.2781 -2.9281 -2.5874 45 1 8.6162 -3.8372 -5.1376 46 1 5.4400 -3.1311 -0.6415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334981314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = -47.597239 kcal Electronic energy + Delta-G solvation = -27764.974506 eV Core-core repulsion = 24040.564904 eV Total energy + Delta-G solvation = -3724.409602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59606 -38.64517 -36.91845 -36.32627 -34.19400 -32.92031 -32.21732 -31.26944 -29.68611 -28.43140 -27.76015 -27.20140 -25.17758 -23.85308 -21.94180 -21.37021 -20.79015 -19.82955 -18.86397 -18.06208 -17.28510 -16.80301 -16.21888 -15.40606 -15.06097 -14.75994 -14.57212 -14.48681 -14.25892 -13.79487 -13.36920 -13.22757 -12.96975 -12.80939 -12.69518 -12.35378 -12.24336 -12.17940 -12.02175 -11.78608 -11.62653 -11.57041 -11.39541 -11.10932 -11.04285 -10.89635 -10.53594 -10.50012 -10.37870 -10.04663 -9.76510 -9.65748 -9.29501 -9.02543 -8.78449 -8.26562 -7.25852 -6.72080 -6.47300 -4.25808 2.81946 2.91038 3.08294 3.17449 3.22070 3.29772 3.88490 4.08746 4.18291 4.33749 4.49949 4.59149 4.65039 4.83221 4.91899 4.95250 4.99878 5.17714 5.26770 5.42137 5.47987 5.51083 5.56887 5.69424 5.77712 5.80430 5.85330 5.89530 6.05986 6.08569 6.30793 6.32786 6.40842 6.47425 6.95368 7.01814 7.15108 7.21289 7.41244 7.48449 7.82150 7.92317 8.11036 8.13265 8.23356 8.40644 8.56244 8.80144 9.05567 9.09806 9.26456 10.43262 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.003744 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.824415 B = 7476.063559 C = 8410.093947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 C -0.131 4.131 4 O -0.524 6.524 5 C 0.134 3.866 6 H 0.071 0.929 7 C -0.128 4.128 8 C -0.131 4.131 9 C 0.097 3.903 10 N -0.633 5.633 11 C 0.711 3.289 12 O -0.529 6.529 13 N -0.684 5.684 14 C 0.167 3.833 15 C -0.254 4.254 16 C -0.098 4.098 17 C -0.163 4.163 18 C 0.116 3.884 19 C -0.459 4.459 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.812 5.812 23 Si 0.914 3.086 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.264 1.264 27 C -0.198 4.198 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.372 0.628 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.390 0.610 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.127 0.873 45 H 0.276 0.724 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 8.289 14.113 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.073 3.927 3 C -0.189 4.189 4 O -0.329 6.329 5 C 0.029 3.971 6 H 0.089 0.911 7 C -0.166 4.166 8 C -0.169 4.169 9 C -0.026 4.026 10 N -0.373 5.373 11 C 0.413 3.587 12 O -0.401 6.401 13 N -0.331 5.331 14 C 0.074 3.926 15 C -0.276 4.276 16 C -0.117 4.117 17 C -0.183 4.183 18 C 0.113 3.887 19 C -0.491 4.491 20 H 0.091 0.909 21 C -0.143 4.143 22 N -0.439 5.439 23 Si 0.739 3.261 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.220 4.220 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.220 0.780 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.223 0.777 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.144 0.856 45 H 0.087 0.913 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.459 8.466 12.922 19.847 hybrid contribution -0.316 -0.771 0.103 0.839 sum -12.775 7.696 13.024 19.800 Atomic orbital electron populations 1.22533 0.96144 1.02221 1.02635 1.21464 0.91663 0.93523 0.86035 1.21654 1.02376 0.93589 1.01236 1.86780 1.76698 1.28282 1.41143 1.22087 0.80035 0.99571 0.95403 0.91064 1.22770 0.97928 1.01898 0.94030 1.22708 0.94244 1.02775 0.97185 1.22199 0.98472 0.96843 0.85103 1.47574 1.05330 1.62095 1.22344 1.15475 0.80428 0.80085 0.82738 1.91014 1.77956 1.47565 1.23519 1.42627 1.03798 1.59359 1.27334 1.17213 0.88343 0.93126 0.93872 1.20074 0.96848 1.01788 1.08843 1.20503 0.97235 0.96818 0.97156 1.21547 0.98082 0.96549 1.02157 1.17525 0.89529 0.92475 0.89155 1.19480 1.29082 1.01315 0.99176 0.90852 1.25832 0.93150 0.97509 0.97839 1.69776 1.27297 1.32846 1.14027 0.86233 0.78661 0.81852 0.79379 1.19609 1.20386 1.18792 1.21032 0.99845 0.95420 1.05699 0.91803 0.91714 0.92441 0.91883 0.92376 0.91899 0.77997 0.90047 0.90078 0.89963 0.90592 0.91108 0.91882 0.77684 0.89499 0.89096 0.85575 0.91308 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.12 1.45 0.86 -90.62 -0.08 1.37 16 3 C -0.13 -1.63 8.42 37.16 0.31 -1.32 16 4 O -0.52 -8.97 9.75 -59.53 -0.58 -9.55 16 5 C 0.13 1.57 2.58 -66.95 -0.17 1.40 16 6 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.13 -0.98 5.24 -24.90 -0.13 -1.11 16 8 C -0.13 -0.94 7.07 -24.70 -0.17 -1.12 16 9 C 0.10 0.95 6.60 -2.65 -0.02 0.94 16 10 N -0.63 -8.82 2.07 -168.83 -0.35 -9.17 16 11 C 0.71 13.69 7.76 -86.91 -0.67 13.02 16 12 O -0.53 -12.39 11.11 -19.00 -0.21 -12.60 16 13 N -0.68 -13.09 5.29 -14.27 -0.08 -13.17 16 14 C 0.17 3.95 6.24 -83.76 -0.52 3.42 16 15 C -0.25 -5.82 9.97 -39.10 -0.39 -6.21 16 16 C -0.10 -2.37 10.02 -39.69 -0.40 -2.77 16 17 C -0.16 -4.44 8.66 -38.84 -0.34 -4.77 16 18 C 0.12 3.29 5.55 -106.85 -0.59 2.70 16 19 C -0.46 -13.03 9.05 -37.74 -0.34 -13.37 16 20 H 0.07 2.02 7.85 -52.48 -0.41 1.61 16 21 C 0.07 1.91 5.40 -17.34 -0.09 1.82 16 22 N -0.81 -22.30 10.63 55.55 0.59 -21.71 16 23 Si 0.91 20.09 29.56 -169.99 -5.02 15.07 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 26 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.20 -5.31 8.39 -38.69 -0.32 -5.64 16 28 H 0.06 0.47 6.91 -51.93 -0.36 0.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.96 7.22 -51.93 -0.38 0.58 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.59 6.40 -51.92 -0.33 0.25 16 34 H 0.37 5.77 8.81 45.56 0.40 6.17 16 35 H 0.08 0.55 5.49 -51.93 -0.29 0.27 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.66 7.23 -51.93 -0.38 0.28 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.39 5.99 7.28 -40.82 -0.30 5.70 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.13 3.53 6.15 -52.49 -0.32 3.21 16 45 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 46 H 0.11 2.93 6.51 -52.49 -0.34 2.58 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.50 359.30 -9.92 -43.42 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.06 Total: 15.29 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.62 Total: -12.99 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.17 Total: -44.05 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.79 Total: -22.15 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.50 -9.92 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334981314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.174 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds