Wall clock time and date at job start Tue Mar 31 2020 13:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.53000 * 109.47173 * 239.99914 * 2 1 3 5 5 O 1.45196 * 109.46875 * 119.99864 * 2 1 3 6 6 C 1.34685 * 116.99988 * 60.00000 * 5 2 1 7 7 O 1.21440 * 120.00088 * 359.97438 * 6 5 2 8 8 C 1.48048 * 120.00130 * 179.97438 * 6 5 2 9 9 C 1.39181 * 119.68611 * 180.29920 * 8 6 5 10 10 C 1.38796 * 119.22370 * 180.28169 * 9 8 6 11 11 C 1.38290 * 118.57973 * 359.43046 * 10 9 8 12 12 C 1.39477 * 119.30044 * 0.28019 * 11 10 9 13 13 N 1.38984 * 119.63400 * 180.02562 * 12 11 10 14 14 C 1.46505 * 119.99745 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.46666 * 179.25149 * 14 13 12 16 16 C 1.50699 * 115.55060 * 39.68104 * 15 14 13 17 17 H 1.08003 * 119.99932 * 264.66596 * 16 15 14 18 18 C 1.37872 * 120.00473 * 84.67065 * 16 15 14 19 19 N 1.31519 * 119.99915 * 352.55934 * 18 16 15 20 20 Si 1.86796 * 120.00532 * 172.55791 * 18 16 15 21 21 H 1.48498 * 109.47157 * 59.99525 * 20 18 16 22 22 H 1.48500 * 109.47498 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47005 * 300.00151 * 20 18 16 24 24 C 1.52992 * 117.49970 * 253.96652 * 15 14 13 25 25 C 1.52999 * 60.00248 * 252.51345 * 24 15 14 26 26 N 1.32054 * 120.73372 * 0.02562 * 12 11 10 27 27 H 1.09007 * 109.47276 * 300.00531 * 1 2 3 28 28 H 1.09005 * 109.46997 * 60.00163 * 1 2 3 29 29 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47067 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47177 * 299.99932 * 3 2 1 32 32 H 1.08996 * 109.47132 * 59.99956 * 3 2 1 33 33 H 1.09000 * 109.47091 * 300.00387 * 4 2 1 34 34 H 1.08995 * 109.47055 * 60.00162 * 4 2 1 35 35 H 1.08998 * 109.47378 * 180.02562 * 4 2 1 36 36 H 1.07995 * 120.38569 * 0.02562 * 9 8 6 37 37 H 1.07992 * 120.70783 * 179.71077 * 10 9 8 38 38 H 1.08006 * 120.34675 * 180.30176 * 11 10 9 39 39 H 0.96996 * 119.99798 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47332 * 299.24776 * 14 13 12 41 41 H 1.08999 * 109.47422 * 59.25407 * 14 13 12 42 42 H 0.96997 * 120.00474 * 185.02176 * 19 18 16 43 43 H 1.09000 * 117.49749 * 0.02562 * 24 15 14 44 44 H 1.08998 * 117.50150 * 145.02299 * 24 15 14 45 45 H 1.09002 * 117.49938 * 252.50778 * 25 24 15 46 46 H 1.08999 * 117.51668 * 107.48328 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6520 -1.9727 1.3384 7 8 0.9510 -2.5095 0.5046 8 6 2.1086 -2.7344 2.5229 9 6 1.7359 -4.0672 2.6711 10 6 2.1645 -4.7705 3.7883 11 6 2.9612 -4.1210 4.7134 12 6 3.3036 -2.7856 4.5014 13 7 4.1044 -2.1263 5.4264 14 6 4.5835 -2.8338 6.6165 15 6 5.4529 -1.8932 7.4533 16 6 4.9665 -0.4700 7.5475 17 1 5.3539 0.2789 6.8725 18 6 4.0269 -0.1238 8.4952 19 7 3.4474 -1.0571 9.2183 20 14 3.5769 1.6708 8.7525 21 1 3.0350 2.2313 7.4886 22 1 2.5511 1.7758 9.8211 23 1 4.7875 2.4323 9.1526 24 6 6.9653 -2.1234 7.4324 25 6 6.1540 -2.4826 8.6789 26 7 2.8753 -2.1408 3.4316 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 1.1169 -4.5472 1.9277 37 1 1.8857 -5.8041 3.9297 38 1 3.3149 -4.6424 5.5906 39 1 4.3453 -1.1975 5.2845 40 1 3.7314 -3.1651 7.2099 41 1 5.1728 -3.6988 6.3123 42 1 2.7350 -0.8220 9.8331 43 1 7.3409 -2.9447 6.8221 44 1 7.6089 -1.2454 7.4866 45 1 6.2639 -1.8409 9.5531 46 1 5.9957 -3.5403 8.8892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338715707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:01 Heat of formation + Delta-G solvation = -24.013912 kcal Electronic energy + Delta-G solvation = -26640.468528 eV Core-core repulsion = 22917.081575 eV Total energy + Delta-G solvation = -3723.386952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84757 -39.64572 -37.24642 -36.81791 -34.41210 -34.02330 -32.21528 -32.05808 -29.72556 -27.49776 -27.47620 -25.97156 -25.50580 -24.79098 -22.58201 -21.34438 -21.11926 -19.78713 -19.31091 -17.74861 -17.09518 -16.42295 -16.00142 -15.96145 -15.70980 -15.01755 -14.76863 -14.48730 -14.35536 -14.15505 -13.99802 -13.67583 -13.21493 -13.06979 -12.72423 -12.54438 -12.45033 -12.22328 -12.02053 -11.95908 -11.77593 -11.65380 -11.53946 -11.29932 -11.05723 -10.98121 -10.59078 -10.38942 -10.36117 -10.20528 -9.93441 -9.68431 -9.49411 -9.18794 -9.00121 -8.55918 -8.24928 -7.12853 -6.16246 -4.24497 0.85570 1.74500 2.64689 2.67427 3.25527 3.30441 3.33607 3.71806 4.22367 4.31479 4.52332 4.63544 4.68232 4.82094 4.97149 5.12891 5.17892 5.30610 5.38110 5.40713 5.41688 5.54558 5.61470 5.64844 5.69208 5.72664 5.81938 5.89517 5.93527 6.14053 6.16217 6.17476 6.19943 6.30102 6.38047 6.42067 6.53138 6.60287 6.67844 6.83814 6.96425 7.21105 7.34677 7.54367 7.74722 7.87056 8.24898 8.29787 8.64985 8.77084 9.43732 10.91494 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003586 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.418063 B = 7806.708103 C = 9060.024024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.112 3.888 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.322 6.322 6 C 0.531 3.469 7 O -0.503 6.503 8 C 0.138 3.862 9 C -0.190 4.190 10 C -0.043 4.043 11 C -0.212 4.212 12 C 0.410 3.590 13 N -0.681 5.681 14 C 0.167 3.833 15 C 0.030 3.970 16 C -0.505 4.505 17 H 0.061 0.939 18 C 0.080 3.920 19 N -0.873 5.873 20 Si 0.889 3.111 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.209 4.209 25 C -0.151 4.151 26 N -0.510 5.510 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -3.299 -14.500 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.238 6.238 6 C 0.375 3.625 7 O -0.391 6.391 8 C 0.000 4.000 9 C -0.215 4.215 10 C -0.069 4.069 11 C -0.238 4.238 12 C 0.169 3.831 13 N -0.309 5.309 14 C 0.042 3.958 15 C 0.030 3.970 16 C -0.542 4.542 17 H 0.079 0.921 18 C -0.125 4.125 19 N -0.508 5.508 20 Si 0.716 3.284 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.247 4.247 25 C -0.189 4.189 26 N -0.231 5.231 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.253 0.747 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.277 -2.634 -14.483 15.081 hybrid contribution -0.544 0.477 0.343 0.801 sum -3.821 -2.157 -14.140 14.805 Atomic orbital electron populations 1.22496 0.94140 1.04671 1.02712 1.22221 0.94387 0.92559 0.83232 1.21831 1.02443 0.92501 1.02946 1.22489 1.01822 1.03036 0.96591 1.86794 1.68677 1.24222 1.44085 1.20912 0.76622 0.80486 0.84449 1.90713 1.35560 1.70468 1.42406 1.19580 0.97123 0.90988 0.92352 1.21523 1.05459 0.93812 1.00688 1.21206 0.93944 0.99638 0.92071 1.21743 1.04458 0.94947 1.02687 1.18476 0.88711 0.88540 0.87369 1.44900 1.50052 1.15522 1.20398 1.21006 0.97600 0.92928 0.84236 1.18933 0.87430 0.95185 0.95501 1.20260 1.24919 0.91603 1.17423 0.92069 1.24945 0.95633 0.97145 0.94805 1.69944 1.23198 1.32539 1.25133 0.86701 0.78207 0.85354 0.78093 1.20011 1.21271 1.20106 1.23090 0.97101 1.01443 1.03028 1.22514 1.04945 0.98624 0.92815 1.67116 1.14606 1.38219 1.03161 0.91850 0.91175 0.89840 0.91318 0.90550 0.91256 0.89854 0.91171 0.91921 0.84411 0.84512 0.84507 0.74731 0.91614 0.94657 0.92763 0.91554 0.90303 0.89840 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.37 37.16 0.31 -1.77 16 2 C 0.11 1.38 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 5 O -0.32 -5.14 9.70 -40.45 -0.39 -5.53 16 6 C 0.53 8.67 7.26 34.75 0.25 8.92 16 7 O -0.50 -8.01 11.85 -19.22 -0.23 -8.23 16 8 C 0.14 2.36 6.74 -83.04 -0.56 1.80 16 9 C -0.19 -2.76 9.63 -39.02 -0.38 -3.14 16 10 C -0.04 -0.58 10.16 -39.36 -0.40 -0.98 16 11 C -0.21 -3.35 9.33 -39.10 -0.36 -3.72 16 12 C 0.41 7.68 7.65 -155.20 -1.19 6.50 16 13 N -0.68 -13.68 5.52 -60.41 -0.33 -14.01 16 14 C 0.17 3.36 4.97 -4.04 -0.02 3.34 16 15 C 0.03 0.67 1.71 -155.66 -0.27 0.41 16 16 C -0.50 -12.63 7.41 -34.44 -0.26 -12.88 16 17 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 18 C 0.08 2.05 5.38 -17.82 -0.10 1.96 16 19 N -0.87 -23.25 12.98 55.43 0.72 -22.53 16 20 Si 0.89 20.44 29.55 -169.99 -5.02 15.41 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.21 -4.19 9.88 -26.74 -0.26 -4.46 16 25 C -0.15 -3.24 9.52 -26.73 -0.25 -3.49 16 26 N -0.51 -9.71 10.15 -9.01 -0.09 -9.80 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.08 5.88 -51.93 -0.31 0.77 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.05 5.88 -51.93 -0.31 0.74 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.14 1.76 7.63 -52.49 -0.40 1.36 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.14 2.00 6.70 -52.48 -0.35 1.65 16 39 H 0.41 8.87 7.54 -40.82 -0.31 8.57 16 40 H 0.07 1.44 7.96 -51.93 -0.41 1.02 16 41 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 42 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 43 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -27.51 380.40 -9.66 -37.17 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.10 Total: 10.83 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.94 Total: -9.04 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.29 Total: -46.34 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.62 Total: -13.77 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.51 -9.66 -37.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338715707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.154 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds