Wall clock time and date at job start Tue Mar 31 2020 13:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.53000 * 109.47173 * 239.99914 * 2 1 3 5 5 O 1.45196 * 109.46875 * 119.99864 * 2 1 3 6 6 C 1.34685 * 116.99988 * 60.00000 * 5 2 1 7 7 O 1.21440 * 120.00088 * 359.97438 * 6 5 2 8 8 C 1.48048 * 120.00130 * 179.97438 * 6 5 2 9 9 C 1.39181 * 119.68611 * 180.29920 * 8 6 5 10 10 C 1.38796 * 119.22370 * 180.28169 * 9 8 6 11 11 C 1.38290 * 118.57973 * 359.43046 * 10 9 8 12 12 C 1.39477 * 119.30044 * 0.28019 * 11 10 9 13 13 N 1.38984 * 119.63400 * 180.02562 * 12 11 10 14 14 C 1.46505 * 119.99745 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.46666 * 179.25149 * 14 13 12 16 16 C 1.50699 * 115.55060 * 39.68104 * 15 14 13 17 17 H 1.08003 * 119.99932 * 264.66596 * 16 15 14 18 18 C 1.37872 * 120.00473 * 84.67065 * 16 15 14 19 19 N 1.31519 * 119.99915 * 352.55934 * 18 16 15 20 20 Si 1.86796 * 120.00532 * 172.55791 * 18 16 15 21 21 H 1.48498 * 109.47157 * 59.99525 * 20 18 16 22 22 H 1.48500 * 109.47498 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47005 * 300.00151 * 20 18 16 24 24 C 1.52992 * 117.49970 * 253.96652 * 15 14 13 25 25 C 1.52999 * 60.00248 * 252.51345 * 24 15 14 26 26 N 1.32054 * 120.73372 * 0.02562 * 12 11 10 27 27 H 1.09007 * 109.47276 * 300.00531 * 1 2 3 28 28 H 1.09005 * 109.46997 * 60.00163 * 1 2 3 29 29 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47067 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47177 * 299.99932 * 3 2 1 32 32 H 1.08996 * 109.47132 * 59.99956 * 3 2 1 33 33 H 1.09000 * 109.47091 * 300.00387 * 4 2 1 34 34 H 1.08995 * 109.47055 * 60.00162 * 4 2 1 35 35 H 1.08998 * 109.47378 * 180.02562 * 4 2 1 36 36 H 1.07995 * 120.38569 * 0.02562 * 9 8 6 37 37 H 1.07992 * 120.70783 * 179.71077 * 10 9 8 38 38 H 1.08006 * 120.34675 * 180.30176 * 11 10 9 39 39 H 0.96996 * 119.99798 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47332 * 299.24776 * 14 13 12 41 41 H 1.08999 * 109.47422 * 59.25407 * 14 13 12 42 42 H 0.96997 * 120.00474 * 185.02176 * 19 18 16 43 43 H 1.09000 * 117.49749 * 0.02562 * 24 15 14 44 44 H 1.08998 * 117.50150 * 145.02299 * 24 15 14 45 45 H 1.09002 * 117.49938 * 252.50778 * 25 24 15 46 46 H 1.08999 * 117.51668 * 107.48328 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6520 -1.9727 1.3384 7 8 0.9510 -2.5095 0.5046 8 6 2.1086 -2.7344 2.5229 9 6 1.7359 -4.0672 2.6711 10 6 2.1645 -4.7705 3.7883 11 6 2.9612 -4.1210 4.7134 12 6 3.3036 -2.7856 4.5014 13 7 4.1044 -2.1263 5.4264 14 6 4.5835 -2.8338 6.6165 15 6 5.4529 -1.8932 7.4533 16 6 4.9665 -0.4700 7.5475 17 1 5.3539 0.2789 6.8725 18 6 4.0269 -0.1238 8.4952 19 7 3.4474 -1.0571 9.2183 20 14 3.5769 1.6708 8.7525 21 1 3.0350 2.2313 7.4886 22 1 2.5511 1.7758 9.8211 23 1 4.7875 2.4323 9.1526 24 6 6.9653 -2.1234 7.4324 25 6 6.1540 -2.4826 8.6789 26 7 2.8753 -2.1408 3.4316 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 1.1169 -4.5472 1.9277 37 1 1.8857 -5.8041 3.9297 38 1 3.3149 -4.6424 5.5906 39 1 4.3453 -1.1975 5.2845 40 1 3.7314 -3.1651 7.2099 41 1 5.1728 -3.6988 6.3123 42 1 2.7350 -0.8220 9.8331 43 1 7.3409 -2.9447 6.8221 44 1 7.6089 -1.2454 7.4866 45 1 6.2639 -1.8409 9.5531 46 1 5.9957 -3.5403 8.8892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338715707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:01 Heat of formation + Delta-G solvation = -36.933477 kcal Electronic energy + Delta-G solvation = -26641.028762 eV Core-core repulsion = 22917.081575 eV Total energy + Delta-G solvation = -3723.947187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02070 -40.89802 -38.80789 -38.02537 -35.83717 -35.06953 -34.00573 -33.43170 -31.05953 -28.38236 -28.32243 -27.72587 -27.03246 -26.15539 -23.78281 -22.89923 -22.46318 -21.21041 -20.73035 -18.95403 -18.46200 -17.89763 -17.40709 -17.12482 -16.89512 -16.65226 -16.32033 -15.83124 -15.62619 -15.43702 -15.26078 -14.75566 -14.60982 -14.45600 -14.02495 -13.96784 -13.46465 -13.39784 -13.14217 -13.03800 -12.94280 -12.88393 -12.87042 -12.83257 -12.51845 -12.41004 -12.29895 -12.01878 -11.45687 -11.40968 -11.28932 -11.27091 -10.85616 -10.72676 -10.48337 -10.42612 -9.95291 -8.54258 -8.12460 -6.22764 -0.38165 0.53515 1.39773 1.41919 1.43644 1.46973 1.56108 2.32066 2.42139 2.94945 3.16243 3.33492 3.52393 3.71730 3.78271 3.88920 3.94180 4.06773 4.20853 4.29817 4.37450 4.52166 4.55400 4.57986 4.59970 4.67875 4.73643 4.74356 4.77330 4.84647 4.85186 5.01632 5.06717 5.08110 5.09789 5.24624 5.24930 5.26270 5.29192 5.42392 5.48886 5.63800 5.67274 5.75888 6.12157 6.39025 6.63705 6.81163 6.87000 7.22402 7.46207 8.94065 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003586 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.418063 B = 7806.708103 C = 9060.024024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.343 6.343 6 C 0.529 3.471 7 O -0.504 6.504 8 C 0.111 3.889 9 C -0.176 4.176 10 C -0.028 4.028 11 C -0.214 4.214 12 C 0.387 3.613 13 N -0.696 5.696 14 C 0.184 3.816 15 C 0.004 3.996 16 C -0.507 4.507 17 H 0.051 0.949 18 C 0.039 3.961 19 N -0.896 5.896 20 Si 0.936 3.064 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.187 4.187 25 C -0.154 4.154 26 N -0.538 5.538 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.402 0.598 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.259 0.741 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -4.389 -16.099 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.062 3.938 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.259 6.259 6 C 0.373 3.627 7 O -0.393 6.393 8 C -0.026 4.026 9 C -0.201 4.201 10 C -0.053 4.053 11 C -0.240 4.240 12 C 0.147 3.853 13 N -0.325 5.325 14 C 0.059 3.941 15 C 0.003 3.997 16 C -0.545 4.545 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.533 5.533 20 Si 0.763 3.237 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.224 4.224 25 C -0.192 4.192 26 N -0.260 5.260 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.177 0.823 37 H 0.201 0.799 38 H 0.167 0.833 39 H 0.238 0.762 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.588 -3.736 -16.114 16.926 hybrid contribution -0.477 0.805 0.722 1.183 sum -4.065 -2.931 -15.391 16.187 Atomic orbital electron populations 1.22461 0.93487 1.03831 1.03778 1.22655 0.95108 0.93418 0.82605 1.21875 1.02211 0.91281 1.04041 1.22443 1.01628 1.02202 0.97077 1.86778 1.69045 1.24187 1.45920 1.20899 0.76681 0.80747 0.84386 1.90700 1.35667 1.70582 1.42396 1.19960 0.97743 0.92343 0.92546 1.21894 1.04248 0.92784 1.01180 1.21708 0.91874 1.01353 0.90334 1.21985 1.04559 0.93847 1.03630 1.18736 0.89375 0.89727 0.87418 1.44794 1.51624 1.15057 1.21009 1.20744 0.96510 0.92987 0.83811 1.19054 0.89309 0.94478 0.96870 1.20487 1.24347 0.93096 1.16586 0.93116 1.25472 0.96045 0.99686 0.95053 1.70025 1.23825 1.33560 1.25933 0.85964 0.77878 0.82336 0.77540 1.20455 1.21297 1.19753 1.23087 0.95482 1.01967 1.01885 1.22441 1.05548 0.99052 0.92124 1.67004 1.15634 1.39469 1.03901 0.92576 0.88299 0.91542 0.91731 0.87414 0.92158 0.91554 0.88352 0.92174 0.82255 0.79889 0.83268 0.76180 0.93840 0.92244 0.93174 0.88793 0.90715 0.92281 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.37 71.98 0.60 -3.28 16 2 C 0.10 2.33 1.13 -10.80 -0.01 2.31 16 3 C -0.14 -2.63 8.85 71.98 0.64 -2.00 16 4 C -0.18 -3.67 8.37 71.98 0.60 -3.06 16 5 O -0.34 -11.11 9.70 -55.95 -0.54 -11.65 16 6 C 0.53 17.28 7.26 70.43 0.51 17.79 16 7 O -0.50 -15.82 11.85 20.03 0.24 -15.58 16 8 C 0.11 3.75 6.74 41.82 0.28 4.03 16 9 C -0.18 -4.76 9.63 22.63 0.22 -4.54 16 10 C -0.03 -0.66 10.16 22.42 0.23 -0.43 16 11 C -0.21 -6.41 9.33 22.58 0.21 -6.20 16 12 C 0.39 14.48 7.65 133.26 1.02 15.50 16 13 N -0.70 -28.34 5.52 -345.04 -1.91 -30.24 16 14 C 0.18 7.36 4.97 86.38 0.43 7.79 16 15 C 0.00 0.16 1.71 -52.93 -0.09 0.07 16 16 C -0.51 -25.82 7.41 25.60 0.19 -25.63 16 17 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 18 C 0.04 2.06 5.38 84.65 0.46 2.52 16 19 N -0.90 -48.62 12.98 21.45 0.28 -48.34 16 20 Si 0.94 42.71 29.55 68.60 2.03 44.73 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C -0.19 -7.25 9.88 30.59 0.30 -6.95 16 25 C -0.15 -6.51 9.52 30.59 0.29 -6.22 16 26 N -0.54 -20.79 10.15 -182.41 -1.85 -22.64 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.07 1.68 5.88 -2.39 -0.01 1.66 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.62 5.88 -2.39 -0.01 1.60 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.16 3.59 7.63 -2.91 -0.02 3.56 16 37 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.15 4.04 6.70 -2.91 -0.02 4.02 16 39 H 0.40 17.85 7.54 -92.71 -0.70 17.15 16 40 H 0.04 1.91 7.96 -2.39 -0.02 1.89 16 41 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 42 H 0.26 13.71 8.32 -92.71 -0.77 12.94 16 43 H 0.09 3.12 8.08 -2.39 -0.02 3.10 16 44 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 45 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -61.02 380.40 4.40 -56.61 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.28 Total: 35.39 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.88 Total: -8.29 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.48 Total: -101.22 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.31 Total: -27.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.02 4.40 -56.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338715707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.679 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds