Wall clock time and date at job start Tue Mar 31 2020 12:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47131 * 54.99667 * 4 3 2 6 6 N 1.46502 * 109.46918 * 295.00451 * 4 3 2 7 7 C 1.34773 * 120.00362 * 155.00170 * 6 4 3 8 8 O 1.21291 * 119.99685 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00504 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47495 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46643 * 55.00436 * 10 9 7 12 12 C 1.50696 * 109.47518 * 295.00588 * 10 9 7 13 13 H 1.08007 * 119.99473 * 325.12322 * 12 10 9 14 14 C 1.37871 * 120.00633 * 145.12296 * 12 10 9 15 15 N 1.31507 * 120.00505 * 184.99064 * 14 12 10 16 16 Si 1.86813 * 119.99636 * 4.98667 * 14 12 10 17 17 H 1.48501 * 109.46956 * 84.72923 * 16 14 12 18 18 H 1.48492 * 109.46977 * 204.73185 * 16 14 12 19 19 H 1.48499 * 109.47113 * 324.73101 * 16 14 12 20 20 C 1.50697 * 109.47404 * 175.00124 * 10 9 7 21 21 C 1.38230 * 120.00008 * 64.69383 * 20 10 9 22 22 C 1.38233 * 120.00138 * 179.78921 * 21 20 10 23 23 C 1.38236 * 120.00086 * 0.44283 * 22 21 20 24 24 C 1.38237 * 119.99872 * 359.81306 * 23 22 21 25 25 C 1.38235 * 120.00167 * 244.97392 * 20 10 9 26 26 C 1.50693 * 109.46999 * 175.00393 * 4 3 2 27 27 N 1.34779 * 119.99929 * 299.99352 * 26 4 3 28 28 O 1.21280 * 120.00055 * 120.00299 * 26 4 3 29 29 H 1.08995 * 109.47412 * 60.00035 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46901 * 299.99245 * 1 2 3 32 32 H 1.08995 * 109.47409 * 120.00523 * 2 1 3 33 33 H 1.09001 * 109.46901 * 240.00755 * 2 1 3 34 34 H 1.08995 * 109.47074 * 300.00173 * 3 2 1 35 35 H 1.08996 * 109.47097 * 60.00354 * 3 2 1 36 36 H 0.97007 * 120.00012 * 334.99324 * 6 4 3 37 37 H 1.08999 * 109.47559 * 300.00268 * 9 7 6 38 38 H 1.09000 * 109.46781 * 60.00141 * 9 7 6 39 39 H 0.97003 * 120.00425 * 180.02562 * 15 14 12 40 40 H 1.08009 * 119.99848 * 0.02562 * 21 20 10 41 41 H 1.08000 * 120.00161 * 180.27622 * 22 21 20 42 42 H 1.08001 * 120.00091 * 179.83615 * 23 22 21 43 43 H 1.07998 * 120.00029 * 180.02562 * 24 23 22 44 44 H 1.08007 * 120.00020 * 359.96980 * 25 20 10 45 45 H 0.97002 * 119.99554 * 0.02562 * 27 26 4 46 46 H 0.97000 * 120.00306 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.2808 0.2921 1.2981 8 8 5.9757 0.2654 0.3043 9 6 5.7839 -0.3081 2.5856 10 6 7.1861 -0.8803 2.3680 11 1 7.8373 -0.1034 1.9670 12 6 7.1149 -2.0280 1.3940 13 1 6.2549 -2.6814 1.3915 14 6 8.1474 -2.2441 0.5062 15 7 8.0428 -3.1834 -0.4081 16 14 9.6951 -1.2022 0.6022 17 1 10.6205 -1.7822 1.6084 18 1 10.3591 -1.1788 -0.7258 19 1 9.3357 0.1825 1.0004 20 6 7.7385 -1.3699 3.6818 21 6 7.1334 -2.4273 4.3349 22 6 7.6426 -2.8792 5.5379 23 6 8.7514 -2.2678 6.0924 24 6 9.3534 -1.2070 5.4420 25 6 8.8467 -0.7578 4.2368 26 6 4.0722 2.8580 -0.1244 27 7 3.7462 3.5968 -1.2035 28 8 4.7699 3.3323 0.7470 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8935 -0.5139 0.8899 33 1 1.8934 -0.5137 -0.8901 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.5031 0.8798 2.0456 37 1 5.8210 0.4624 3.3557 38 1 5.1116 -1.1057 2.9017 39 1 8.7694 -3.3356 -1.0325 40 1 6.2650 -2.9029 3.9032 41 1 7.1725 -3.7083 6.0459 42 1 9.1477 -2.6193 7.0337 43 1 10.2200 -0.7295 5.8750 44 1 9.3171 0.0710 3.7286 45 1 3.1880 3.2175 -1.9002 46 1 4.0697 4.5078 -1.2834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343470749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:22 Heat of formation + Delta-G solvation = -66.730301 kcal Electronic energy + Delta-G solvation = -27083.514531 eV Core-core repulsion = 23358.275257 eV Total energy + Delta-G solvation = -3725.239274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07779 -38.78845 -38.05744 -36.00945 -34.06471 -33.60909 -33.05602 -31.62197 -30.18061 -29.73102 -28.46635 -25.86387 -24.65804 -22.62231 -21.83804 -21.40646 -20.70899 -20.01965 -19.13965 -17.60424 -16.93065 -16.83057 -16.51768 -15.87913 -15.57621 -14.77617 -14.69832 -14.46834 -14.39916 -14.11037 -13.77063 -13.55701 -13.47539 -12.98322 -12.67956 -12.66476 -12.47186 -12.23014 -12.06771 -11.83090 -11.75372 -11.35604 -11.26740 -11.09593 -10.83025 -10.74728 -10.46239 -10.32140 -9.99487 -9.80759 -9.67259 -9.55660 -9.03514 -8.92967 -8.60265 -8.37541 -8.19302 -7.77724 -5.94336 -3.90360 2.12242 2.17973 2.71843 3.26000 3.45952 3.49994 3.54115 3.60597 3.84678 4.55100 4.56379 4.61554 4.74631 4.82882 5.11367 5.24944 5.32445 5.34016 5.44643 5.54943 5.58434 5.61809 5.68239 5.71485 5.83853 5.92393 6.01071 6.04780 6.08341 6.16151 6.19235 6.27457 6.37892 6.65015 6.71853 6.74232 6.82848 6.87075 7.10234 7.17064 7.30115 7.32830 7.63629 7.77101 7.87072 8.05708 8.31526 8.57372 9.03817 9.08196 9.71185 11.18780 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.004076 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.268265 B = 6867.193298 C = 7340.918022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.130 3.870 5 H 0.115 0.885 6 N -0.725 5.725 7 C 0.522 3.478 8 O -0.498 6.498 9 C -0.113 4.113 10 C 0.045 3.955 11 H 0.058 0.942 12 C -0.483 4.483 13 H 0.071 0.929 14 C 0.087 3.913 15 N -0.900 5.900 16 Si 0.868 3.132 17 H -0.276 1.276 18 H -0.292 1.292 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.102 4.102 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.140 4.140 26 C 0.505 3.495 27 N -0.859 5.859 28 O -0.530 6.530 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.399 0.601 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 8.983 3.447 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C 0.020 3.980 5 H 0.133 0.867 6 N -0.380 5.380 7 C 0.309 3.691 8 O -0.369 6.369 9 C -0.153 4.153 10 C 0.026 3.974 11 H 0.076 0.924 12 C -0.520 4.520 13 H 0.089 0.911 14 C -0.115 4.115 15 N -0.537 5.537 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.219 1.219 19 H -0.186 1.186 20 C -0.039 4.039 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.142 4.142 25 C -0.158 4.158 26 C 0.288 3.712 27 N -0.424 5.424 28 O -0.405 6.405 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.227 0.773 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.775 8.968 3.219 15.937 hybrid contribution 0.615 0.682 -0.180 0.936 sum -12.160 9.650 3.038 15.818 Atomic orbital electron populations 1.21769 0.95718 1.01840 1.01530 1.21539 0.95615 0.95602 1.03549 1.21843 0.91954 0.98722 1.03198 1.20754 0.94510 0.91018 0.91753 0.86695 1.45812 1.19363 1.61208 1.11581 1.20795 0.79998 0.76743 0.91533 1.90734 1.55100 1.54841 1.36216 1.21602 1.00373 0.99716 0.93622 1.18312 0.91355 0.97633 0.90092 0.92425 1.20582 1.05646 1.11223 1.14526 0.91063 1.24839 0.97984 0.94392 0.94266 1.69879 1.32641 1.32956 1.18266 0.86996 0.83996 0.82240 0.77108 1.20236 1.21863 1.18577 1.20791 0.94037 0.93991 0.95083 1.20966 1.00527 0.96433 0.94038 1.21057 0.97037 0.99720 0.96648 1.20859 0.97768 0.98071 1.00139 1.20961 0.99636 0.97669 0.95963 1.21099 0.98036 1.00744 0.95962 1.21403 0.79677 0.88726 0.81403 1.43891 1.56432 1.17937 1.24103 1.90737 1.36696 1.72656 1.40383 0.92885 0.92534 0.92841 0.91028 0.91295 0.90431 0.90947 0.76928 0.91227 0.89852 0.92930 0.86185 0.87174 0.87414 0.87348 0.87301 0.77288 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.13 5.82 -26.72 -0.16 -1.28 16 3 C -0.12 -1.02 4.70 -26.73 -0.13 -1.14 16 4 C 0.13 1.70 2.38 -69.09 -0.16 1.53 16 5 H 0.12 1.70 7.58 -51.93 -0.39 1.30 16 6 N -0.72 -10.99 4.06 -54.94 -0.22 -11.21 16 7 C 0.52 10.65 7.41 -10.99 -0.08 10.57 16 8 O -0.50 -12.62 14.65 5.55 0.08 -12.54 16 9 C -0.11 -2.20 4.96 -27.89 -0.14 -2.34 16 10 C 0.05 1.07 1.21 -92.93 -0.11 0.96 16 11 H 0.06 1.50 4.70 -51.93 -0.24 1.26 16 12 C -0.48 -13.39 6.87 -34.44 -0.24 -13.62 16 13 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16 14 C 0.09 2.60 5.47 -17.82 -0.10 2.51 16 15 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 16 Si 0.87 23.38 27.15 -169.99 -4.62 18.77 16 17 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 19 H -0.26 -6.92 6.06 56.52 0.34 -6.58 16 20 C -0.04 -0.83 4.55 -104.63 -0.48 -1.30 16 21 C -0.10 -2.01 8.87 -39.59 -0.35 -2.36 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 24 C -0.12 -2.21 10.05 -39.58 -0.40 -2.60 16 25 C -0.14 -2.86 9.43 -39.58 -0.37 -3.24 16 26 C 0.50 7.25 7.46 -10.99 -0.08 7.17 16 27 N -0.86 -8.14 8.74 31.22 0.27 -7.87 16 28 O -0.53 -10.16 17.16 5.56 0.10 -10.07 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.49 7.42 -51.93 -0.39 0.10 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 4.81 8.60 -40.82 -0.35 4.45 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 39 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.12 2.31 7.80 -52.48 -0.41 1.90 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 2.19 7.95 -52.48 -0.42 1.77 16 45 H 0.40 2.46 8.19 -40.82 -0.33 2.12 16 46 H 0.40 3.39 8.93 -40.82 -0.36 3.03 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -37.82 381.34 -8.22 -46.04 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.13 Total: 10.00 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.22 Total: -11.38 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.82 Total: -46.57 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.62 Total: 18.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.82 -8.22 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343470749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.690 kcal (2) G-P(sol) polarization free energy of solvation -37.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds