Wall clock time and date at job start Tue Mar 31 2020 12:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47592 * 2 1 4 4 C 1.53002 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46855 * 305.00103 * 4 3 2 6 6 N 1.46500 * 109.46690 * 65.00495 * 4 3 2 7 7 C 1.34777 * 119.99489 * 205.00071 * 6 4 3 8 8 O 1.21283 * 120.00194 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99775 * 180.02562 * 7 6 4 10 10 C 1.52998 * 109.47027 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47376 * 304.99978 * 10 9 7 12 12 C 1.50697 * 109.47271 * 64.99623 * 10 9 7 13 13 H 1.07996 * 120.00355 * 234.67584 * 12 10 9 14 14 C 1.37878 * 119.99991 * 54.68127 * 12 10 9 15 15 N 1.31518 * 119.99963 * 4.87080 * 14 12 10 16 16 Si 1.86796 * 120.00437 * 184.87278 * 14 12 10 17 17 H 1.48506 * 109.46853 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47421 * 119.99803 * 16 14 12 19 19 H 1.48507 * 109.47409 * 240.00066 * 16 14 12 20 20 C 1.50702 * 109.47191 * 185.00082 * 10 9 7 21 21 C 1.38238 * 119.99997 * 151.48821 * 20 10 9 22 22 C 1.38235 * 119.99453 * 179.78930 * 21 20 10 23 23 C 1.38232 * 120.00305 * 0.43674 * 22 21 20 24 24 C 1.38240 * 119.99968 * 359.81024 * 23 22 21 25 25 C 1.38233 * 120.00069 * 359.97438 * 24 23 22 26 26 C 1.50705 * 109.46778 * 185.00215 * 4 3 2 27 27 N 1.34771 * 120.00038 * 60.00468 * 26 4 3 28 28 O 1.21277 * 119.99562 * 239.99722 * 26 4 3 29 29 H 1.09000 * 109.46726 * 300.00412 * 1 2 3 30 30 H 1.08995 * 109.46677 * 59.99511 * 1 2 3 31 31 H 1.08996 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47392 * 239.99791 * 2 1 3 33 33 H 1.09007 * 109.46970 * 120.00204 * 2 1 3 34 34 H 1.09007 * 109.46587 * 59.99924 * 3 2 1 35 35 H 1.08997 * 109.47083 * 300.00621 * 3 2 1 36 36 H 0.96995 * 120.00069 * 25.00014 * 6 4 3 37 37 H 1.08996 * 109.47228 * 299.99732 * 9 7 6 38 38 H 1.09004 * 109.47010 * 59.99898 * 9 7 6 39 39 H 0.96992 * 120.00389 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.99809 * 359.97438 * 21 20 10 41 41 H 1.07998 * 119.99962 * 180.27128 * 22 21 20 42 42 H 1.08001 * 119.99880 * 179.84062 * 23 22 21 43 43 H 1.07998 * 119.99865 * 180.02562 * 24 23 22 44 44 H 1.07992 * 120.00319 * 179.97438 * 25 24 23 45 45 H 0.96996 * 120.00250 * 359.97438 * 27 26 4 46 46 H 0.97008 * 120.00040 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 7 4.0589 0.8585 -1.2510 7 6 5.2808 0.2919 -1.2981 8 8 5.9760 0.2658 -0.3046 9 6 5.7839 -0.3082 -2.5858 10 6 7.1865 -0.8794 -2.3685 11 1 7.8373 -0.1021 -1.9678 12 6 7.1162 -2.0270 -1.3944 13 1 7.7335 -2.0218 -0.5082 14 6 6.2639 -3.0838 -1.6345 15 7 5.5835 -3.1376 -2.7587 16 14 6.0752 -4.4392 -0.3630 17 1 6.9436 -4.1461 0.8055 18 1 4.6590 -4.5109 0.0778 19 1 6.4737 -5.7386 -0.9617 20 6 7.7388 -1.3688 -3.6825 21 6 9.1039 -1.3729 -3.8999 22 6 9.6106 -1.8259 -5.1036 23 6 8.7518 -2.2663 -6.0932 24 6 7.3863 -2.2573 -5.8776 25 6 6.8798 -1.8085 -4.6723 26 6 4.0724 2.8579 0.1245 27 7 3.7464 3.5965 1.2036 28 8 4.7701 3.3321 -0.7468 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 3.5031 0.8798 -2.0456 37 1 5.1115 -1.1056 -2.9021 38 1 5.8211 0.4625 -3.3557 39 1 4.9836 -3.8808 -2.9275 40 1 9.7747 -1.0251 -3.1282 41 1 10.6774 -1.8333 -5.2719 42 1 9.1476 -2.6178 -7.0346 43 1 6.7154 -2.6018 -6.6506 44 1 5.8131 -1.8011 -4.5040 45 1 3.1883 3.2173 1.9004 46 1 4.0701 4.5075 1.2835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343470774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:29 Heat of formation + Delta-G solvation = -86.225142 kcal Electronic energy + Delta-G solvation = -27382.769246 eV Core-core repulsion = 23656.684612 eV Total energy + Delta-G solvation = -3726.084634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31607 -40.15194 -39.37470 -37.06838 -35.98762 -34.70143 -34.14337 -32.95127 -31.44076 -30.75744 -29.56490 -27.58688 -25.65684 -24.38121 -23.05922 -22.20337 -21.93203 -21.25141 -20.88066 -18.64201 -18.36779 -18.01473 -17.65893 -17.02359 -16.88469 -16.52894 -15.80623 -15.74286 -15.64078 -15.44542 -15.27068 -14.86176 -14.50588 -14.43302 -14.15655 -13.79699 -13.42901 -13.33135 -13.25174 -13.10607 -12.80748 -12.76841 -12.68124 -12.24787 -12.21312 -12.01164 -11.87246 -11.68462 -11.55706 -11.21625 -11.06673 -11.04660 -10.66323 -10.61777 -10.29750 -9.88953 -9.40167 -9.11438 -7.92305 -6.08551 0.88787 1.00342 1.35785 1.39685 1.50375 1.60290 1.97969 2.32649 2.46724 2.76122 3.20909 3.37881 3.68696 3.91784 4.05241 4.20956 4.31968 4.35573 4.41096 4.45994 4.52473 4.63669 4.70307 4.76817 4.82028 4.88807 4.91309 5.00069 5.08443 5.14674 5.28761 5.32269 5.38919 5.49676 5.53188 5.55707 5.65008 5.68014 5.90391 5.90755 5.94504 6.09501 6.37036 6.42799 6.44209 6.58480 6.75372 6.85868 7.34131 7.52978 7.61557 8.97519 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.004383 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.036445 B = 6387.225282 C = 7327.287176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.106 4.106 4 C 0.125 3.875 5 H 0.098 0.902 6 N -0.711 5.711 7 C 0.528 3.472 8 O -0.571 6.571 9 C -0.127 4.127 10 C 0.089 3.911 11 H 0.006 0.994 12 C -0.489 4.489 13 H 0.025 0.975 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 0.931 3.069 17 H -0.289 1.289 18 H -0.275 1.275 19 H -0.282 1.282 20 C -0.051 4.051 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.080 4.080 26 C 0.502 3.498 27 N -0.832 5.832 28 O -0.585 6.585 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.410 0.590 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.418 0.582 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 8.064 1.921 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.144 4.144 4 C 0.016 3.984 5 H 0.116 0.884 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.449 6.449 9 C -0.167 4.167 10 C 0.070 3.930 11 H 0.024 0.976 12 C -0.527 4.527 13 H 0.044 0.956 14 C -0.164 4.164 15 N -0.523 5.523 16 Si 0.759 3.241 17 H -0.214 1.214 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.052 4.052 21 C -0.173 4.173 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.099 4.099 26 C 0.285 3.715 27 N -0.397 5.397 28 O -0.464 6.464 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.250 0.750 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.342 8.039 1.924 14.035 hybrid contribution 0.055 -0.701 1.040 1.256 sum -11.287 7.338 2.964 13.785 Atomic orbital electron populations 1.21720 0.93835 1.01976 1.02757 1.21525 0.97220 0.95698 1.02043 1.21852 0.88313 0.98761 1.05434 1.20990 0.97344 0.90137 0.89917 0.88389 1.45639 1.18019 1.59602 1.13121 1.21070 0.80606 0.75438 0.91152 1.90567 1.57377 1.58678 1.38296 1.21729 1.01943 1.00177 0.92843 1.17513 0.91416 0.93643 0.90463 0.97563 1.20904 1.22426 1.04435 1.04941 0.95626 1.25232 0.95906 0.98733 0.96535 1.69771 1.28198 1.31717 1.22624 0.85917 0.77804 0.80189 0.80153 1.21448 1.20011 1.20787 1.20312 0.93336 0.96669 0.94863 1.21076 0.95208 1.03212 0.97783 1.21149 1.00017 1.00902 0.93703 1.21205 0.93494 1.02240 0.99695 1.21377 0.95895 1.01480 0.97642 1.21314 1.00918 0.96031 0.91607 1.21524 0.79070 0.89096 0.81776 1.43626 1.55303 1.17891 1.22890 1.90721 1.39301 1.73761 1.42638 0.91172 0.91995 0.93041 0.93111 0.92491 0.86943 0.89755 0.75428 0.85492 0.91653 0.92762 0.88195 0.85007 0.84474 0.85374 0.85094 0.75031 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.45 5.82 30.59 0.18 -2.27 16 3 C -0.11 -1.79 4.70 30.59 0.14 -1.64 16 4 C 0.13 3.44 2.38 44.25 0.11 3.55 16 5 H 0.10 3.01 7.58 -2.39 -0.02 2.99 16 6 N -0.71 -24.31 4.06 -446.08 -1.81 -26.12 16 7 C 0.53 24.05 7.41 87.66 0.65 24.70 16 8 O -0.57 -30.58 14.65 -3.04 -0.04 -30.62 16 9 C -0.13 -5.87 4.07 29.85 0.12 -5.75 16 10 C 0.09 4.66 1.97 -12.29 -0.02 4.64 16 11 H 0.01 0.34 7.91 -2.39 -0.02 0.32 16 12 C -0.49 -27.94 7.27 25.60 0.19 -27.75 16 13 H 0.03 1.58 7.82 -2.91 -0.02 1.55 16 14 C 0.04 1.90 5.12 84.65 0.43 2.33 16 15 N -0.88 -45.15 7.99 21.45 0.17 -44.98 16 16 Si 0.93 44.42 29.54 68.60 2.03 46.45 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.05 -2.48 4.69 -19.86 -0.09 -2.58 16 21 C -0.15 -6.96 9.71 22.27 0.22 -6.74 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 23 C -0.15 -5.27 10.05 22.27 0.22 -5.05 16 24 C -0.15 -5.60 10.05 22.27 0.22 -5.38 16 25 C -0.08 -3.59 7.45 22.27 0.17 -3.42 16 26 C 0.50 14.56 7.46 87.66 0.65 15.21 16 27 N -0.83 -14.43 8.74 -173.54 -1.52 -15.95 16 28 O -0.59 -23.36 17.16 -3.02 -0.05 -23.42 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.21 7.75 -2.38 -0.02 1.19 16 33 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.11 1.12 7.43 -2.38 -0.02 1.11 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.41 11.85 8.60 -92.71 -0.80 11.06 16 37 H 0.13 5.97 4.71 -2.39 -0.01 5.96 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 40 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.13 5.98 5.18 -2.91 -0.02 5.97 16 45 H 0.42 4.03 8.19 -92.71 -0.76 3.28 16 46 H 0.41 6.22 8.93 -92.70 -0.83 5.39 16 Total: -1.00 -75.87 375.03 1.53 -74.35 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -1.37 Total: 36.90 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.12 Total: -16.61 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -3.16 Total: -87.05 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -75.87 1.53 -74.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343470774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.880 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds