Wall clock time and date at job start Tue Mar 31 2020 12:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47411 * 2 1 4 4 C 1.52997 * 109.47141 * 239.99486 * 2 1 3 5 5 H 1.08997 * 109.47444 * 301.93462 * 4 2 1 6 6 C 1.53004 * 109.47287 * 181.93134 * 4 2 1 7 7 C 1.50710 * 109.46795 * 65.95994 * 6 4 2 8 8 O 1.21278 * 120.00059 * 6.00854 * 7 6 4 9 9 N 1.34769 * 119.99532 * 186.00845 * 7 6 4 10 10 C 1.46509 * 119.99693 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47154 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99638 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99572 * 179.97438 * 11 10 9 14 14 C 1.37108 * 119.99461 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00257 * 359.97438 * 14 13 11 16 16 C 1.38946 * 119.99419 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00587 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47252 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47490 * 119.99497 * 18 16 14 21 21 H 1.48499 * 109.47600 * 239.99774 * 18 16 14 22 22 C 1.50699 * 109.46761 * 61.93694 * 4 2 1 23 23 C 1.38236 * 120.00330 * 76.89860 * 22 4 2 24 24 C 1.38233 * 119.99887 * 179.81192 * 23 22 4 25 25 C 1.38230 * 120.00198 * 0.39235 * 24 23 22 26 26 C 1.38235 * 120.00226 * 359.85799 * 25 24 23 27 27 C 1.38235 * 119.99557 * 359.95857 * 26 25 24 28 28 H 1.08992 * 109.47429 * 174.75310 * 1 2 3 29 29 H 1.09000 * 109.46650 * 54.75242 * 1 2 3 30 30 H 1.09002 * 109.46793 * 294.75468 * 1 2 3 31 31 H 1.09009 * 109.46969 * 119.99780 * 2 1 3 32 32 H 1.09001 * 109.46920 * 66.56103 * 3 2 1 33 33 H 1.09005 * 109.47095 * 186.55970 * 3 2 1 34 34 H 1.08996 * 109.47293 * 306.56311 * 3 2 1 35 35 H 1.09000 * 109.47346 * 185.95930 * 6 4 2 36 36 H 1.08998 * 109.47160 * 305.96496 * 6 4 2 37 37 H 0.96995 * 120.00593 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.46785 * 300.00211 * 10 9 7 39 39 H 1.08995 * 109.47045 * 59.99713 * 10 9 7 40 40 H 0.96998 * 120.00437 * 0.02562 * 13 11 10 41 41 H 0.96999 * 119.99983 * 180.02562 * 17 16 14 42 42 H 1.07997 * 119.99631 * 359.97438 * 23 22 4 43 43 H 1.08006 * 119.99640 * 180.22876 * 24 23 22 44 44 H 1.08009 * 120.00080 * 179.83827 * 25 24 23 45 45 H 1.07996 * 120.00328 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.00017 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6487 -1.7385 -1.2666 6 6 3.5693 -0.7636 -1.2251 7 6 4.0300 -1.6241 -0.0768 8 8 3.2195 -2.2388 0.5836 9 7 5.3426 -1.7104 0.2161 10 6 5.7906 -2.5473 1.3321 11 6 7.2913 -2.4714 1.4462 12 8 7.9244 -1.7852 0.6718 13 7 7.9298 -3.1650 2.4093 14 6 9.2952 -3.0954 2.5134 15 1 9.8590 -2.4852 1.8234 16 6 9.9535 -3.8110 3.5060 17 7 9.2676 -4.5539 4.3452 18 14 11.8138 -3.7168 3.6474 19 1 12.3458 -2.8191 2.5908 20 1 12.1823 -3.1826 4.9831 21 1 12.3923 -5.0742 3.4803 22 6 1.5772 0.0162 -2.4791 23 6 2.2096 1.1837 -2.8639 24 6 1.7875 1.8580 -3.9944 25 6 0.7279 1.3694 -4.7355 26 6 0.0922 0.2047 -4.3479 27 6 0.5167 -0.4717 -3.2195 28 1 -0.3634 -1.0233 -0.0940 29 1 -0.3632 0.5931 -0.8393 30 1 -0.3633 0.4303 0.9333 31 1 1.8933 -0.5138 0.8901 32 1 1.7758 1.9213 0.9429 33 1 3.1238 1.4447 -0.1174 34 1 1.5841 1.9891 -0.8254 35 1 3.9360 -1.1818 -2.1625 36 1 3.9587 0.2468 -1.1010 37 1 5.9908 -1.2191 -0.3122 38 1 5.3370 -2.1922 2.2574 39 1 5.4919 -3.5804 1.1543 40 1 7.4235 -3.7134 3.0288 41 1 9.7272 -5.0531 5.0383 42 1 3.0350 1.5674 -2.2828 43 1 2.2840 2.7682 -4.2971 44 1 0.3965 1.8977 -5.6173 45 1 -0.7359 -0.1769 -4.9266 46 1 0.0203 -1.3819 -2.9168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343537619.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:08 Heat of formation + Delta-G solvation = -88.313553 kcal Electronic energy + Delta-G solvation = -26106.174845 eV Core-core repulsion = 22379.999651 eV Total energy + Delta-G solvation = -3726.175194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47878 -40.49607 -39.72864 -37.32887 -36.22578 -35.23447 -33.39149 -32.62940 -31.84092 -30.96286 -29.06620 -28.08444 -26.63913 -25.23344 -23.31511 -22.64829 -21.54048 -21.37740 -20.26401 -19.97254 -18.45374 -17.56079 -17.24628 -16.97584 -16.83864 -16.44540 -16.24719 -16.05183 -15.79515 -15.62931 -15.39338 -14.81293 -14.71998 -14.27645 -14.14167 -13.92771 -13.65576 -13.55951 -13.50619 -13.32857 -12.94621 -12.91568 -12.77865 -12.67736 -12.45535 -12.12997 -12.11403 -11.77548 -11.64294 -11.58672 -11.47666 -11.27525 -10.79472 -10.56356 -10.16396 -10.07240 -9.69162 -9.48941 -8.51983 -6.02219 0.54052 0.59706 1.34491 1.42480 1.56476 1.64495 1.90504 2.06987 2.32572 2.96839 3.13072 3.15214 3.61722 3.73477 3.98932 4.05381 4.18398 4.22618 4.25112 4.26385 4.32729 4.41766 4.43363 4.48857 4.53500 4.63664 4.71020 4.79376 4.84290 4.92963 5.03062 5.08447 5.12389 5.16383 5.25932 5.28892 5.35101 5.38297 5.47476 5.55449 5.69221 5.72624 5.83575 5.91340 6.21373 6.45724 6.57139 7.02811 7.22065 7.43915 7.93594 8.65154 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.002225 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.096965 B =12582.179289 C =13026.658808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.153 4.153 4 C -0.021 4.021 5 H 0.073 0.927 6 C -0.131 4.131 7 C 0.513 3.487 8 O -0.574 6.574 9 N -0.711 5.711 10 C 0.121 3.879 11 C 0.433 3.567 12 O -0.624 6.624 13 N -0.561 5.561 14 C -0.336 4.336 15 H 0.086 0.914 16 C -0.012 4.012 17 N -0.917 5.917 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.074 4.074 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.126 4.126 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.413 0.587 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.280 0.720 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.209 11.024 -14.186 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.040 4.040 5 H 0.092 0.908 6 C -0.170 4.170 7 C 0.302 3.698 8 O -0.453 6.453 9 N -0.365 5.365 10 C -0.007 4.007 11 C 0.220 3.780 12 O -0.512 6.512 13 N -0.196 5.196 14 C -0.465 4.465 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.557 5.557 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.197 1.197 22 C -0.074 4.074 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.144 4.144 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.251 0.749 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.289 10.907 -14.046 25.509 hybrid contribution 0.989 -0.448 0.576 1.229 sum -17.299 10.459 -13.470 24.292 Atomic orbital electron populations 1.21751 0.94616 1.01476 1.01624 1.21120 0.96449 0.96339 0.97064 1.22104 1.01077 0.95649 1.02153 1.19859 0.92587 0.99032 0.92550 0.90824 1.21884 0.97241 1.01189 0.96721 1.21177 0.81026 0.81821 0.85808 1.90659 1.53651 1.47619 1.53419 1.45808 1.08451 1.48935 1.33294 1.20743 0.90775 0.97150 0.91996 1.20462 0.90042 0.83936 0.83573 1.90471 1.68817 1.45981 1.45888 1.41873 1.07549 1.41679 1.28534 1.19769 0.82723 1.28477 1.15543 0.89569 1.26139 1.05231 0.95098 0.94780 1.69683 1.38397 1.29361 1.18227 0.84809 0.76387 0.78381 0.78386 1.19393 1.19630 1.19657 1.19724 0.96335 0.95758 0.95562 1.21295 1.00575 0.95007 0.97208 1.21412 0.97386 1.00558 0.95137 1.21422 0.96444 0.96641 1.00504 1.21366 1.00470 0.95813 0.96817 1.21203 0.97032 1.00477 0.95696 0.93149 0.92304 0.92785 0.91897 0.92934 0.92357 0.91236 0.87105 0.86703 0.74873 0.89000 0.89071 0.76748 0.91080 0.85081 0.84553 0.84541 0.84697 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.75 71.98 0.63 -1.99 16 2 C -0.09 -1.93 2.51 -10.79 -0.03 -1.96 16 3 C -0.15 -2.77 7.65 71.98 0.55 -2.22 16 4 C -0.02 -0.44 1.57 -11.54 -0.02 -0.45 16 5 H 0.07 1.72 7.66 -2.39 -0.02 1.71 16 6 C -0.13 -2.70 4.46 29.85 0.13 -2.56 16 7 C 0.51 14.78 7.42 87.66 0.65 15.43 16 8 O -0.57 -19.88 14.28 -3.02 -0.04 -19.92 16 9 N -0.71 -22.36 5.53 -466.77 -2.58 -24.94 16 10 C 0.12 4.37 6.15 85.63 0.53 4.90 16 11 C 0.43 19.82 7.85 87.66 0.69 20.51 16 12 O -0.62 -31.89 15.24 -3.07 -0.05 -31.94 16 13 N -0.56 -28.12 5.29 -306.98 -1.62 -29.74 16 14 C -0.34 -18.46 9.68 84.04 0.81 -17.65 16 15 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 16 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 17 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 18 Si 1.00 41.67 29.55 68.60 2.03 43.69 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 C -0.07 -1.30 3.69 -19.87 -0.07 -1.38 16 23 C -0.12 -1.94 6.92 22.27 0.15 -1.79 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 26 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 27 C -0.13 -2.12 9.12 22.27 0.20 -1.92 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.05 7.14 -2.39 -0.02 1.03 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.70 6.23 -2.38 -0.01 1.69 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.01 5.74 -2.38 -0.01 1.00 16 34 H 0.07 1.14 5.99 -2.39 -0.01 1.12 16 35 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.12 1.96 4.94 -2.39 -0.01 1.95 16 37 H 0.41 12.74 7.44 -92.71 -0.69 12.05 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 41 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.13 1.82 5.59 -2.91 -0.02 1.80 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.12 1.91 8.02 -2.91 -0.02 1.89 16 Total: -1.00 -65.19 370.79 2.98 -62.22 By element: Atomic # 1 Polarization: 45.42 SS G_CDS: -0.41 Total: 45.01 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.37 Total: 4.02 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -3.92 Total: -103.08 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.09 Total: -51.86 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -65.19 2.98 -62.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343537619.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.097 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds