Wall clock time and date at job start Tue Mar 31 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53005 * 109.46808 * 120.00166 * 2 1 3 5 5 H 1.08995 * 109.47150 * 60.00050 * 4 2 1 6 6 N 1.46496 * 109.46896 * 299.99772 * 4 2 1 7 7 C 1.34779 * 119.99710 * 85.00616 * 6 4 2 8 8 O 1.21278 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99634 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.46674 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47184 * 305.36600 * 10 9 7 12 12 C 1.50697 * 109.47103 * 65.37093 * 10 9 7 13 13 H 1.07995 * 120.00356 * 34.61331 * 12 10 9 14 14 C 1.37882 * 119.99632 * 214.61800 * 12 10 9 15 15 N 1.31508 * 119.99850 * 186.44541 * 14 12 10 16 16 Si 1.86801 * 119.99893 * 6.44676 * 14 12 10 17 17 H 1.48500 * 109.46878 * 85.01153 * 16 14 12 18 18 H 1.48504 * 109.46616 * 205.00730 * 16 14 12 19 19 H 1.48489 * 109.47196 * 325.00574 * 16 14 12 20 20 C 1.50700 * 109.46586 * 185.36917 * 10 9 7 21 21 C 1.38241 * 120.00263 * 296.35339 * 20 10 9 22 22 C 1.38226 * 120.00172 * 179.79056 * 21 20 10 23 23 C 1.38244 * 119.99992 * 0.44764 * 22 21 20 24 24 C 1.38235 * 119.99678 * 359.80781 * 23 22 21 25 25 C 1.38228 * 120.00048 * 359.97438 * 24 23 22 26 26 C 1.50699 * 109.46604 * 180.02562 * 4 2 1 27 27 N 1.34777 * 120.00582 * 299.99567 * 26 4 2 28 28 O 1.21292 * 119.99981 * 120.00383 * 26 4 2 29 29 H 1.08996 * 109.47686 * 299.99825 * 1 2 3 30 30 H 1.09009 * 109.47019 * 59.99937 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47175 * 240.00051 * 2 1 3 33 33 H 1.09001 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47110 * 300.00175 * 3 2 1 35 35 H 1.09002 * 109.46664 * 60.00243 * 3 2 1 36 36 H 0.97000 * 119.99961 * 265.00059 * 6 4 2 37 37 H 1.08995 * 109.47413 * 60.00005 * 9 7 6 38 38 H 1.08993 * 109.47182 * 299.99519 * 9 7 6 39 39 H 0.97006 * 120.00534 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.99393 * 0.02562 * 21 20 10 41 41 H 1.08003 * 120.00534 * 180.27382 * 22 21 20 42 42 H 1.08000 * 119.99808 * 179.83643 * 23 22 21 43 43 H 1.07999 * 119.99465 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.99658 * 180.02562 * 25 24 23 45 45 H 0.97002 * 119.99575 * 0.02562 * 27 26 4 46 46 H 0.96999 * 120.00199 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2492 6 7 1.5516 -0.0307 2.4454 7 6 0.3296 -0.3166 2.9368 8 8 -0.3659 -1.1452 2.3886 9 6 -0.1726 0.3935 4.1676 10 6 -1.5755 -0.1115 4.5110 11 1 -2.2248 0.0011 3.6427 12 6 -1.5047 -1.5656 4.9002 13 1 -0.6440 -1.9404 5.4340 14 6 -2.5388 -2.4175 4.5746 15 7 -2.5377 -3.6541 5.0223 16 14 -3.9412 -1.8151 3.4977 17 1 -3.5639 -1.9569 2.0685 18 1 -5.1572 -2.6227 3.7711 19 1 -4.2175 -0.3873 3.7975 20 6 -2.1303 0.6898 5.6604 21 6 -1.5150 0.6415 6.8974 22 6 -2.0213 1.3798 7.9505 23 6 -3.1486 2.1594 7.7693 24 6 -3.7670 2.2035 6.5337 25 6 -3.2579 1.4686 5.4794 26 6 3.5469 -0.7207 1.2496 27 7 4.2213 -1.3040 0.2388 28 8 4.1530 -0.1955 2.1595 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1077 0.6323 2.8837 37 1 -0.2091 1.4663 3.9787 38 1 0.5000 0.1942 5.0019 39 1 -3.2650 -4.2536 4.7930 40 1 -0.6363 0.0298 7.0398 41 1 -1.5380 1.3456 8.9158 42 1 -3.5457 2.7342 8.5928 43 1 -4.6473 2.8128 6.3921 44 1 -3.7409 1.5035 4.5140 45 1 3.7366 -1.7238 -0.4890 46 1 5.1913 -1.3039 0.2393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355786428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:36 Heat of formation + Delta-G solvation = -61.360589 kcal Electronic energy + Delta-G solvation = -27567.908305 eV Core-core repulsion = 23842.901879 eV Total energy + Delta-G solvation = -3725.006426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.45446 -38.93619 -38.26734 -35.94936 -34.06440 -33.80530 -32.62508 -31.61671 -30.17631 -29.13809 -27.47579 -27.09499 -25.51619 -22.62902 -21.84756 -21.57364 -20.58297 -19.37377 -19.22505 -17.93460 -16.98421 -16.90400 -16.29101 -15.92651 -15.51626 -15.27356 -14.65675 -14.57424 -14.23802 -13.92954 -13.78762 -13.57666 -13.24955 -12.98198 -12.71526 -12.52133 -12.32716 -12.19005 -12.10555 -11.83269 -11.72502 -11.33816 -11.04547 -11.01190 -10.78855 -10.72649 -10.51952 -10.32975 -9.99786 -9.89217 -9.84993 -9.59204 -9.18535 -8.92495 -8.61717 -8.36985 -8.17417 -7.78644 -5.96436 -3.92828 2.13208 2.17987 2.46982 3.13097 3.44471 3.46613 3.49345 3.52937 3.77084 4.55224 4.60362 4.62600 4.75235 4.93224 5.09400 5.32041 5.45744 5.54746 5.56011 5.59235 5.69480 5.71887 5.78052 5.85993 5.97128 6.00998 6.03523 6.06961 6.12510 6.27957 6.28159 6.36425 6.54493 6.60680 6.64778 6.72689 6.77959 6.86568 7.03768 7.13171 7.17632 7.30347 7.60492 7.75123 7.85298 8.01934 8.08571 8.55485 8.98801 9.04031 9.68799 11.16502 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.004326 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.510144 B = 6470.678591 C = 7199.641116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.131 3.869 5 H 0.115 0.885 6 N -0.727 5.727 7 C 0.519 3.481 8 O -0.497 6.497 9 C -0.117 4.117 10 C 0.058 3.942 11 H 0.049 0.951 12 C -0.486 4.486 13 H 0.071 0.929 14 C 0.085 3.915 15 N -0.900 5.900 16 Si 0.874 3.126 17 H -0.272 1.272 18 H -0.298 1.298 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.127 4.127 25 C -0.136 4.136 26 C 0.520 3.480 27 N -0.853 5.853 28 O -0.539 6.539 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.403 0.597 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 10.094 -9.172 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.022 3.978 5 H 0.132 0.868 6 N -0.384 5.384 7 C 0.306 3.694 8 O -0.368 6.368 9 C -0.157 4.157 10 C 0.038 3.962 11 H 0.067 0.933 12 C -0.523 4.523 13 H 0.089 0.911 14 C -0.117 4.117 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.225 1.225 19 H -0.186 1.186 20 C -0.039 4.039 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.145 4.145 25 C -0.154 4.154 26 C 0.304 3.696 27 N -0.417 5.417 28 O -0.415 6.415 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.231 0.769 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.445 9.668 -8.883 15.611 hybrid contribution -0.349 0.079 -0.670 0.759 sum 8.096 9.747 -9.552 15.868 Atomic orbital electron populations 1.21891 0.93017 1.03356 1.01536 1.21501 0.98030 0.96532 0.95795 1.21856 1.00277 0.96004 1.02399 1.20754 0.89259 1.00016 0.87780 0.86783 1.45898 1.19017 1.44559 1.28966 1.20771 0.80146 0.82949 0.85547 1.90736 1.55616 1.31541 1.58930 1.21677 1.00617 0.98294 0.95155 1.18114 0.90647 0.95477 0.91946 0.93253 1.20585 1.05656 0.89348 1.36713 0.91133 1.24882 0.97507 0.94561 0.94724 1.69902 1.32965 1.06083 1.44761 0.86922 0.81468 0.79204 0.82211 1.19799 1.22464 1.18634 1.20737 0.94108 0.91919 0.97117 1.20969 1.00577 0.97964 0.92417 1.21052 0.96948 0.98061 0.98486 1.20859 0.97462 1.01526 0.96936 1.20957 0.99652 1.00232 0.93645 1.21142 0.97569 0.98033 0.98700 1.20762 0.90509 0.76902 0.81383 1.43797 1.10997 1.60931 1.26000 1.90736 1.70256 1.44912 1.35575 0.91828 0.93507 0.91307 0.90680 0.93163 0.92467 0.91945 0.76177 0.91331 0.89629 0.92911 0.86269 0.87216 0.87468 0.87430 0.87059 0.76861 0.76760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.72 37.16 0.29 -1.63 16 2 C -0.10 -1.07 2.70 -90.62 -0.25 -1.32 16 3 C -0.15 -1.50 8.79 37.16 0.33 -1.17 16 4 C 0.13 1.71 2.42 -69.08 -0.17 1.54 16 5 H 0.11 1.65 7.58 -51.93 -0.39 1.26 16 6 N -0.73 -10.94 4.07 -54.93 -0.22 -11.16 16 7 C 0.52 9.71 5.94 -10.98 -0.07 9.64 16 8 O -0.50 -11.13 12.12 5.56 0.07 -11.06 16 9 C -0.12 -2.17 4.94 -27.88 -0.14 -2.31 16 10 C 0.06 1.29 1.28 -92.92 -0.12 1.17 16 11 H 0.05 1.17 4.79 -51.93 -0.25 0.92 16 12 C -0.49 -13.20 6.94 -34.44 -0.24 -13.44 16 13 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 14 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 15 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 16 Si 0.87 22.48 27.04 -169.99 -4.60 17.88 16 17 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 18 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 19 H -0.26 -6.25 5.15 56.52 0.29 -5.96 16 20 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 21 C -0.10 -1.99 8.87 -39.58 -0.35 -2.35 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 24 C -0.13 -2.19 10.05 -39.59 -0.40 -2.59 16 25 C -0.14 -2.69 9.13 -39.59 -0.36 -3.05 16 26 C 0.52 6.28 6.23 -10.99 -0.07 6.21 16 27 N -0.85 -6.49 8.77 31.22 0.27 -6.22 16 28 O -0.54 -8.39 16.67 5.55 0.09 -8.30 16 29 H 0.06 1.00 5.77 -51.93 -0.30 0.70 16 30 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.07 1.07 7.53 -51.93 -0.39 0.68 16 32 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 33 H 0.05 0.49 7.22 -51.93 -0.37 0.12 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 36 H 0.40 5.62 7.79 -40.82 -0.32 5.30 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.53 7.80 -51.93 -0.41 1.13 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.12 2.34 7.77 -52.48 -0.41 1.93 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.11 2.15 6.96 -52.48 -0.37 1.78 16 45 H 0.40 2.03 8.25 -40.82 -0.34 1.69 16 46 H 0.40 2.53 8.93 -40.82 -0.36 2.17 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -34.71 367.83 -7.90 -42.61 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.90 Total: 11.54 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.93 Total: -13.67 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.82 Total: -44.54 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.16 Total: -19.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.60 Total: 17.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.71 -7.90 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355786428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.755 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds