Wall clock time and date at job start Tue Mar 31 2020 12:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 C 1.53005 * 109.46808 * 120.00166 * 2 1 3 5 5 H 1.08995 * 109.47150 * 60.00050 * 4 2 1 6 6 N 1.46496 * 109.46896 * 299.99772 * 4 2 1 7 7 C 1.34779 * 119.99710 * 85.00616 * 6 4 2 8 8 O 1.21278 * 120.00016 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99634 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.46674 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47184 * 305.36600 * 10 9 7 12 12 C 1.50697 * 109.47103 * 65.37093 * 10 9 7 13 13 H 1.07995 * 120.00356 * 34.61331 * 12 10 9 14 14 C 1.37882 * 119.99632 * 214.61800 * 12 10 9 15 15 N 1.31508 * 119.99850 * 186.44541 * 14 12 10 16 16 Si 1.86801 * 119.99893 * 6.44676 * 14 12 10 17 17 H 1.48500 * 109.46878 * 85.01153 * 16 14 12 18 18 H 1.48504 * 109.46616 * 205.00730 * 16 14 12 19 19 H 1.48489 * 109.47196 * 325.00574 * 16 14 12 20 20 C 1.50700 * 109.46586 * 185.36917 * 10 9 7 21 21 C 1.38241 * 120.00263 * 296.35339 * 20 10 9 22 22 C 1.38226 * 120.00172 * 179.79056 * 21 20 10 23 23 C 1.38244 * 119.99992 * 0.44764 * 22 21 20 24 24 C 1.38235 * 119.99678 * 359.80781 * 23 22 21 25 25 C 1.38228 * 120.00048 * 359.97438 * 24 23 22 26 26 C 1.50699 * 109.46604 * 180.02562 * 4 2 1 27 27 N 1.34777 * 120.00582 * 299.99567 * 26 4 2 28 28 O 1.21292 * 119.99981 * 120.00383 * 26 4 2 29 29 H 1.08996 * 109.47686 * 299.99825 * 1 2 3 30 30 H 1.09009 * 109.47019 * 59.99937 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47175 * 240.00051 * 2 1 3 33 33 H 1.09001 * 109.47006 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47110 * 300.00175 * 3 2 1 35 35 H 1.09002 * 109.46664 * 60.00243 * 3 2 1 36 36 H 0.97000 * 119.99961 * 265.00059 * 6 4 2 37 37 H 1.08995 * 109.47413 * 60.00005 * 9 7 6 38 38 H 1.08993 * 109.47182 * 299.99519 * 9 7 6 39 39 H 0.97006 * 120.00534 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.99393 * 0.02562 * 21 20 10 41 41 H 1.08003 * 120.00534 * 180.27382 * 22 21 20 42 42 H 1.08000 * 119.99808 * 179.83643 * 23 22 21 43 43 H 1.07999 * 119.99465 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.99658 * 180.02562 * 25 24 23 45 45 H 0.97002 * 119.99575 * 0.02562 * 27 26 4 46 46 H 0.96999 * 120.00199 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2492 6 7 1.5516 -0.0307 2.4454 7 6 0.3296 -0.3166 2.9368 8 8 -0.3659 -1.1452 2.3886 9 6 -0.1726 0.3935 4.1676 10 6 -1.5755 -0.1115 4.5110 11 1 -2.2248 0.0011 3.6427 12 6 -1.5047 -1.5656 4.9002 13 1 -0.6440 -1.9404 5.4340 14 6 -2.5388 -2.4175 4.5746 15 7 -2.5377 -3.6541 5.0223 16 14 -3.9412 -1.8151 3.4977 17 1 -3.5639 -1.9569 2.0685 18 1 -5.1572 -2.6227 3.7711 19 1 -4.2175 -0.3873 3.7975 20 6 -2.1303 0.6898 5.6604 21 6 -1.5150 0.6415 6.8974 22 6 -2.0213 1.3798 7.9505 23 6 -3.1486 2.1594 7.7693 24 6 -3.7670 2.2035 6.5337 25 6 -3.2579 1.4686 5.4794 26 6 3.5469 -0.7207 1.2496 27 7 4.2213 -1.3040 0.2388 28 8 4.1530 -0.1955 2.1595 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1077 0.6323 2.8837 37 1 -0.2091 1.4663 3.9787 38 1 0.5000 0.1942 5.0019 39 1 -3.2650 -4.2536 4.7930 40 1 -0.6363 0.0298 7.0398 41 1 -1.5380 1.3456 8.9158 42 1 -3.5457 2.7342 8.5928 43 1 -4.6473 2.8128 6.3921 44 1 -3.7409 1.5035 4.5140 45 1 3.7366 -1.7238 -0.4890 46 1 5.1913 -1.3039 0.2393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355786428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:35 Heat of formation + Delta-G solvation = -86.959383 kcal Electronic energy + Delta-G solvation = -27569.018352 eV Core-core repulsion = 23842.901879 eV Total energy + Delta-G solvation = -3726.116473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61911 -40.33002 -39.63908 -37.11617 -35.75104 -34.80181 -33.90661 -33.56849 -31.59719 -30.55316 -28.82281 -28.06208 -27.23811 -24.29874 -23.29040 -22.53173 -21.91978 -20.80800 -20.47369 -19.02404 -18.88671 -18.20570 -17.48793 -17.17004 -16.75795 -16.54140 -16.30046 -15.90121 -15.63006 -15.36796 -15.01030 -14.85815 -14.79318 -14.42871 -14.14736 -14.05258 -13.85142 -13.56959 -13.35077 -13.24978 -13.00223 -12.76561 -12.65544 -12.32102 -12.08438 -12.02314 -11.91107 -11.78827 -11.74245 -11.45325 -11.08761 -11.04749 -10.71890 -10.60897 -10.48826 -9.90415 -9.61140 -9.29250 -8.19999 -6.16387 0.69468 0.74296 1.33990 1.41483 1.43839 1.48683 1.91870 2.14243 2.43760 2.67548 3.09035 3.26956 3.74355 3.78574 3.98379 4.10189 4.14451 4.21444 4.31868 4.33146 4.45854 4.49803 4.52920 4.64332 4.67689 4.80386 4.86206 4.87428 4.97503 4.99777 5.08652 5.11556 5.21723 5.35667 5.39308 5.41520 5.49600 5.56054 5.70614 5.77680 5.83270 5.85034 6.04167 6.33899 6.34740 6.38438 6.71418 6.82491 7.23463 7.47330 7.55256 8.97049 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.004326 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.510144 B = 6470.678591 C = 7199.641116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.126 3.874 5 H 0.096 0.904 6 N -0.714 5.714 7 C 0.518 3.482 8 O -0.541 6.541 9 C -0.115 4.115 10 C 0.061 3.939 11 H 0.037 0.963 12 C -0.464 4.464 13 H 0.030 0.970 14 C 0.025 3.975 15 N -0.954 5.954 16 Si 0.926 3.074 17 H -0.281 1.281 18 H -0.302 1.302 19 H -0.233 1.233 20 C -0.063 4.063 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.152 4.152 26 C 0.524 3.476 27 N -0.827 5.827 28 O -0.577 6.577 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.258 0.742 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.418 0.582 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 13.141 -9.780 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.200 4.200 4 C 0.017 3.983 5 H 0.114 0.886 6 N -0.370 5.370 7 C 0.306 3.694 8 O -0.416 6.416 9 C -0.155 4.155 10 C 0.042 3.958 11 H 0.055 0.945 12 C -0.501 4.501 13 H 0.048 0.952 14 C -0.171 4.171 15 N -0.596 5.596 16 Si 0.752 3.248 17 H -0.207 1.207 18 H -0.229 1.229 19 H -0.156 1.156 20 C -0.063 4.063 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.158 4.158 24 C -0.142 4.142 25 C -0.170 4.170 26 C 0.308 3.692 27 N -0.392 5.392 28 O -0.456 6.456 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.155 0.845 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.129 0.871 45 H 0.250 0.750 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.643 12.751 -9.535 18.116 hybrid contribution -0.278 -0.796 -0.433 0.948 sum 8.365 11.955 -9.967 17.670 Atomic orbital electron populations 1.21815 0.94946 1.01492 1.01219 1.21490 0.96153 0.97504 0.95812 1.21811 1.00588 0.95007 1.02625 1.20925 0.90352 0.99201 0.87867 0.88586 1.45689 1.17776 1.44152 1.29377 1.20780 0.80898 0.82365 0.85380 1.90724 1.57072 1.33534 1.60297 1.21598 0.98456 1.00127 0.95317 1.17973 0.92749 0.92925 0.92196 0.94473 1.20763 1.03304 0.92034 1.34029 0.95151 1.25604 1.00338 0.94717 0.96467 1.70047 1.34229 1.07627 1.47654 0.86083 0.78565 0.80208 0.79919 1.20693 1.22902 1.15635 1.20516 0.95403 0.93725 0.96691 1.21004 1.00822 0.99008 0.93076 1.21386 0.97214 0.97022 0.98794 1.21332 0.96312 1.00465 0.97732 1.21340 1.00327 0.99440 0.93071 1.21263 0.97196 0.98797 0.99783 1.20503 0.89818 0.77052 0.81803 1.43559 1.11647 1.59041 1.24954 1.90728 1.70610 1.47030 1.37239 0.94409 0.91454 0.93969 0.87212 0.92509 0.90744 0.93274 0.75351 0.88060 0.89425 0.93346 0.87575 0.84490 0.83598 0.84146 0.87106 0.75018 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 7.72 71.98 0.56 -3.13 16 2 C -0.09 -1.82 2.70 -10.79 -0.03 -1.85 16 3 C -0.14 -2.57 8.79 71.98 0.63 -1.94 16 4 C 0.13 3.23 2.42 44.25 0.11 3.34 16 5 H 0.10 2.87 7.58 -2.39 -0.02 2.85 16 6 N -0.71 -21.75 4.07 -446.10 -1.82 -23.57 16 7 C 0.52 20.03 5.94 87.66 0.52 20.55 16 8 O -0.54 -25.39 12.12 -3.02 -0.04 -25.43 16 9 C -0.11 -4.34 4.94 29.85 0.15 -4.19 16 10 C 0.06 2.79 1.28 -12.29 -0.02 2.78 16 11 H 0.04 1.79 4.79 -2.39 -0.01 1.77 16 12 C -0.46 -26.40 6.94 25.60 0.18 -26.23 16 13 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 14 C 0.02 1.51 5.47 84.66 0.46 1.97 16 15 N -0.95 -62.44 13.96 21.45 0.30 -62.14 16 16 Si 0.93 47.92 27.04 68.60 1.85 49.77 16 17 H -0.28 -14.77 7.11 99.48 0.71 -14.06 16 18 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 19 H -0.23 -10.83 5.15 99.48 0.51 -10.31 16 20 C -0.06 -2.61 4.77 -19.86 -0.09 -2.71 16 21 C -0.12 -4.72 8.87 22.27 0.20 -4.52 16 22 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 23 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 24 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 25 C -0.15 -5.71 9.13 22.27 0.20 -5.51 16 26 C 0.52 12.04 6.23 87.66 0.55 12.59 16 27 N -0.83 -10.70 8.77 -173.52 -1.52 -12.22 16 28 O -0.58 -17.54 16.67 -3.07 -0.05 -17.59 16 29 H 0.04 1.20 5.77 -2.39 -0.01 1.18 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.34 7.53 -2.39 -0.02 1.32 16 32 H 0.11 1.49 7.56 -2.39 -0.02 1.47 16 33 H 0.06 0.96 7.22 -2.39 -0.02 0.95 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.02 7.60 -2.39 -0.02 1.00 16 36 H 0.41 11.42 7.79 -92.71 -0.72 10.70 16 37 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.09 3.25 7.80 -2.39 -0.02 3.23 16 39 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 40 H 0.11 4.30 7.77 -2.91 -0.02 4.28 16 41 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.11 4.08 6.96 -2.91 -0.02 4.06 16 45 H 0.42 3.04 8.25 -92.71 -0.76 2.27 16 46 H 0.41 4.16 8.93 -92.71 -0.83 3.33 16 Total: -1.00 -80.59 367.83 1.32 -79.27 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.49 Total: 31.99 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.08 Total: -20.09 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.04 Total: -97.93 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.09 Total: -43.02 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.85 Total: 49.77 kcal Total: -80.59 1.32 -79.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355786428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.691 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds