Wall clock time and date at job start Tue Mar 31 2020 12:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47040 * 239.99938 * 2 1 3 5 5 C 1.50699 * 109.46839 * 59.99818 * 4 2 1 6 6 N 1.34778 * 119.99792 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00466 * 0.02562 * 5 4 2 8 8 N 1.46502 * 109.47055 * 120.00346 * 2 1 3 9 9 C 1.34777 * 119.99559 * 299.99096 * 8 2 1 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 2 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 2 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09005 * 109.47271 * 299.99684 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99910 * 1 2 3 30 30 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47328 * 299.99952 * 3 2 1 33 33 H 1.08993 * 109.47195 * 60.00126 * 3 2 1 34 34 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47138 * 300.00181 * 4 2 1 36 36 H 0.96998 * 120.00063 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00367 * 179.97438 * 6 5 4 38 38 H 0.97002 * 120.00062 * 120.00327 * 8 2 1 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5375 -0.0109 -2.4797 6 7 1.8635 -0.4710 -3.7038 7 8 0.8407 0.9755 -2.3685 8 7 2.0183 -0.6907 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9953 0.7558 2.5315 11 6 2.1955 -0.9402 3.6507 12 6 1.6850 -0.2193 4.8999 13 1 1.9577 0.8347 4.8481 14 6 0.1854 -0.3471 4.9762 15 1 -0.3084 -1.1920 4.5193 16 6 -0.5561 0.6145 5.6291 17 7 0.0504 1.5710 6.2976 18 14 -2.4223 0.5543 5.5706 19 1 -2.9788 1.6881 6.3516 20 1 -2.8767 0.6542 4.1604 21 1 -2.8947 -0.7273 6.1533 22 6 2.3049 -0.8388 6.1260 23 6 2.0056 -2.1445 6.4672 24 6 2.5777 -2.7141 7.5894 25 6 3.4420 -1.9751 8.3754 26 6 3.7372 -0.6677 8.0370 27 6 3.1685 -0.0995 6.9124 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2493 36 1 2.4212 -1.2597 -3.7928 37 1 1.5399 -0.0141 -4.4958 38 1 2.5760 -1.4793 1.1071 39 1 3.2856 -0.9399 3.6505 40 1 1.8326 -1.9681 3.6509 41 1 1.0152 1.5572 6.3962 42 1 1.3272 -2.7206 5.8554 43 1 2.3472 -3.7357 7.8534 44 1 3.8868 -2.4192 9.2535 45 1 4.4127 -0.0905 8.6508 46 1 3.3993 0.9219 6.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356778917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:56 Heat of formation + Delta-G solvation = -58.812269 kcal Electronic energy + Delta-G solvation = -27194.743251 eV Core-core repulsion = 23469.847329 eV Total energy + Delta-G solvation = -3724.895922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37616 -39.09383 -38.33003 -35.80782 -34.10162 -33.96317 -31.80585 -31.01701 -30.09533 -28.79026 -28.03469 -26.86881 -25.03124 -23.02802 -21.90872 -21.60002 -20.37765 -19.55808 -19.08579 -17.50503 -17.06557 -16.83412 -16.28188 -15.80982 -15.45249 -15.04044 -14.72837 -14.24565 -14.13200 -13.76088 -13.64224 -13.56144 -13.28573 -12.96054 -12.75094 -12.40816 -12.27307 -11.88314 -11.68236 -11.61917 -11.54993 -11.29119 -10.98197 -10.84256 -10.67866 -10.63785 -10.41276 -10.09999 -10.00118 -9.94814 -9.81592 -9.64149 -8.76995 -8.55337 -8.49090 -8.22140 -8.12518 -7.61291 -6.17589 -3.86382 2.20408 2.26149 2.42383 3.12351 3.52815 3.56805 3.60236 3.75195 3.87190 4.52429 4.63557 4.71412 4.84200 4.88204 5.22175 5.43873 5.51972 5.60803 5.64814 5.67519 5.73660 5.78135 6.03041 6.12102 6.17070 6.23027 6.23884 6.28726 6.31264 6.33466 6.44607 6.50827 6.71691 6.78979 6.82402 6.89521 6.95100 7.02855 7.10339 7.23031 7.25443 7.40426 7.75977 7.87649 8.06239 8.14369 8.27554 8.56330 9.01620 9.13625 9.82238 11.21901 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.003738 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.490966 B = 7488.949189 C = 8726.870308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.196 3.804 3 C -0.172 4.172 4 C -0.147 4.147 5 C 0.521 3.479 6 N -0.860 5.860 7 O -0.523 6.523 8 N -0.746 5.746 9 C 0.516 3.484 10 O -0.490 6.490 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.050 0.950 14 C -0.565 4.565 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.907 5.907 18 Si 1.058 2.942 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.400 0.600 37 H 0.401 0.599 38 H 0.388 0.612 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.271 0.729 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -9.574 -14.570 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.110 3.890 3 C -0.230 4.230 4 C -0.188 4.188 5 C 0.306 3.694 6 N -0.424 5.424 7 O -0.399 6.399 8 N -0.401 5.401 9 C 0.303 3.697 10 O -0.361 6.361 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.068 0.932 14 C -0.602 4.602 15 H 0.063 0.937 16 C -0.172 4.172 17 N -0.542 5.542 18 Si 0.888 3.112 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.149 4.149 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.221 0.779 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.890 -7.359 -13.713 17.019 hybrid contribution 1.826 -1.702 -0.819 2.627 sum 8.716 -9.061 -14.531 19.215 Atomic orbital electron populations 1.22436 0.93851 1.01560 1.05286 1.19795 0.94889 0.92176 0.82178 1.22427 0.99438 0.95936 1.05205 1.21922 1.02705 1.00967 0.93159 1.20401 0.79664 0.84337 0.84971 1.43904 1.56365 1.33968 1.08135 1.90696 1.37002 1.25982 1.86212 1.46319 1.55769 1.32462 1.05565 1.20732 0.80251 0.85134 0.83625 1.90698 1.34451 1.25100 1.85808 1.21668 0.99176 1.00452 0.94384 1.17859 0.96215 0.95260 0.85254 0.93231 1.21505 0.89452 1.10948 1.38341 0.93748 1.25534 1.06125 0.92493 0.93075 1.70730 1.12187 1.33086 1.38178 0.83710 0.75518 0.75714 0.76297 1.20989 1.21443 1.21816 1.20877 0.90930 0.92963 0.98512 1.20927 0.98939 0.95725 0.96890 1.21014 0.98507 0.99175 0.96165 1.20819 1.01070 0.95081 1.00141 1.20965 1.00599 0.95301 0.97434 1.21079 0.98214 0.99594 0.95977 0.89786 0.90040 0.93927 0.94044 0.89923 0.90114 0.88461 0.88394 0.77216 0.76892 0.77878 0.91847 0.90445 0.91805 0.86705 0.87489 0.87618 0.87481 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.10 37.16 0.30 -2.61 16 2 C 0.20 2.78 0.80 -131.82 -0.11 2.68 16 3 C -0.17 -2.76 8.10 37.16 0.30 -2.46 16 4 C -0.15 -1.35 4.88 -27.88 -0.14 -1.48 16 5 C 0.52 5.29 7.51 -10.99 -0.08 5.21 16 6 N -0.86 -4.92 8.87 31.22 0.28 -4.64 16 7 O -0.52 -7.62 12.18 5.56 0.07 -7.55 16 8 N -0.75 -10.82 5.11 -47.61 -0.24 -11.07 16 9 C 0.52 10.12 7.00 -10.99 -0.08 10.04 16 10 O -0.49 -11.98 11.23 5.55 0.06 -11.92 16 11 C -0.12 -2.24 4.95 -27.88 -0.14 -2.37 16 12 C 0.07 1.75 1.23 -92.92 -0.11 1.64 16 13 H 0.05 1.35 6.59 -51.93 -0.34 1.00 16 14 C -0.56 -15.38 6.35 -34.44 -0.22 -15.59 16 15 H 0.04 1.22 7.82 -52.48 -0.41 0.81 16 16 C 0.03 0.97 5.45 -17.82 -0.10 0.87 16 17 N -0.91 -27.92 13.56 55.43 0.75 -27.17 16 18 Si 1.06 26.64 29.91 -169.99 -5.08 21.56 16 19 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.03 -0.71 4.53 -104.62 -0.47 -1.19 16 23 C -0.11 -2.18 8.90 -39.58 -0.35 -2.54 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 26 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.13 -2.74 9.18 -39.58 -0.36 -3.10 16 28 H 0.08 1.76 6.17 -51.93 -0.32 1.44 16 29 H 0.08 1.37 5.51 -51.93 -0.29 1.08 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 1.34 5.51 -51.93 -0.29 1.06 16 33 H 0.08 1.60 6.17 -51.93 -0.32 1.28 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 1.01 8.83 -40.82 -0.36 0.65 16 37 H 0.40 2.01 8.93 -40.82 -0.36 1.65 16 38 H 0.39 4.19 8.47 -40.82 -0.35 3.84 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.39 7.96 -51.93 -0.41 0.97 16 41 H 0.27 8.20 6.24 -40.82 -0.25 7.94 16 42 H 0.11 2.30 7.85 -52.48 -0.41 1.89 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -36.09 368.20 -8.08 -44.17 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.71 Total: 10.49 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.75 Total: -19.42 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.79 Total: -42.88 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.13 Total: -19.47 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -5.08 Total: 21.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.09 -8.08 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356778917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.642 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds