Wall clock time and date at job start Tue Mar 31 2020 12:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.53005 * 109.47040 * 239.99938 * 2 1 3 5 5 C 1.50699 * 109.46839 * 59.99818 * 4 2 1 6 6 N 1.34778 * 119.99792 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00466 * 0.02562 * 5 4 2 8 8 N 1.46502 * 109.47055 * 120.00346 * 2 1 3 9 9 C 1.34777 * 119.99559 * 299.99096 * 8 2 1 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 2 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 2 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09005 * 109.47271 * 299.99684 * 1 2 3 29 29 H 1.09003 * 109.47520 * 59.99910 * 1 2 3 30 30 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47266 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47328 * 299.99952 * 3 2 1 33 33 H 1.08993 * 109.47195 * 60.00126 * 3 2 1 34 34 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47138 * 300.00181 * 4 2 1 36 36 H 0.96998 * 120.00063 * 0.02562 * 6 5 4 37 37 H 0.97000 * 120.00367 * 179.97438 * 6 5 4 38 38 H 0.97002 * 120.00062 * 120.00327 * 8 2 1 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5375 -0.0109 -2.4797 6 7 1.8635 -0.4710 -3.7038 7 8 0.8407 0.9755 -2.3685 8 7 2.0183 -0.6907 1.1961 9 6 1.6928 -0.2301 2.4202 10 8 0.9953 0.7558 2.5315 11 6 2.1955 -0.9402 3.6507 12 6 1.6850 -0.2193 4.8999 13 1 1.9577 0.8347 4.8481 14 6 0.1854 -0.3471 4.9762 15 1 -0.3084 -1.1920 4.5193 16 6 -0.5561 0.6145 5.6291 17 7 0.0504 1.5710 6.2976 18 14 -2.4223 0.5543 5.5706 19 1 -2.9788 1.6881 6.3516 20 1 -2.8767 0.6542 4.1604 21 1 -2.8947 -0.7273 6.1533 22 6 2.3049 -0.8388 6.1260 23 6 2.0056 -2.1445 6.4672 24 6 2.5777 -2.7141 7.5894 25 6 3.4420 -1.9751 8.3754 26 6 3.7372 -0.6677 8.0370 27 6 3.1685 -0.0995 6.9124 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1299 -0.7209 -1.2495 35 1 1.6766 -1.7490 -1.2493 36 1 2.4212 -1.2597 -3.7928 37 1 1.5399 -0.0141 -4.4958 38 1 2.5760 -1.4793 1.1071 39 1 3.2856 -0.9399 3.6505 40 1 1.8326 -1.9681 3.6509 41 1 1.0152 1.5572 6.3962 42 1 1.3272 -2.7206 5.8554 43 1 2.3472 -3.7357 7.8534 44 1 3.8868 -2.4192 9.2535 45 1 4.4127 -0.0905 8.6508 46 1 3.3993 0.9219 6.6480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356778917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:55 Heat of formation + Delta-G solvation = -86.049406 kcal Electronic energy + Delta-G solvation = -27195.924342 eV Core-core repulsion = 23469.847329 eV Total energy + Delta-G solvation = -3726.077013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47371 -40.43678 -39.78160 -37.15774 -35.90993 -34.65751 -33.49436 -32.65142 -31.59581 -30.23761 -29.04984 -28.21523 -26.96216 -24.80929 -23.25595 -22.91473 -21.65241 -20.94948 -20.47155 -18.85767 -18.23536 -17.90385 -17.72811 -17.18164 -16.48605 -16.27515 -16.14732 -15.72892 -15.66197 -15.57391 -14.93936 -14.91094 -14.60685 -14.43501 -14.26027 -14.02659 -13.90835 -13.42958 -13.18975 -12.95533 -12.85974 -12.64686 -12.56125 -12.44158 -12.10246 -12.07465 -12.02320 -11.95199 -11.69531 -11.48226 -10.91936 -10.62462 -10.51010 -10.46343 -10.13632 -9.89472 -9.63114 -9.25254 -8.42224 -6.08585 0.68805 0.75044 1.46246 1.57331 1.68081 1.72360 2.01127 2.17105 2.62276 2.91011 3.12225 3.38567 3.56864 3.96808 4.05438 4.14749 4.17317 4.29815 4.30619 4.32289 4.46376 4.52312 4.57953 4.65633 4.67877 4.84054 4.86176 4.87296 4.93692 5.00656 5.03032 5.16481 5.25455 5.41478 5.42688 5.44847 5.46359 5.75666 5.78018 5.83779 5.96920 6.00872 6.26380 6.32869 6.42870 6.52408 6.80406 6.88951 7.43760 7.65970 7.68430 8.98223 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.003738 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.490966 B = 7488.949189 C = 8726.870308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.194 3.806 3 C -0.165 4.165 4 C -0.136 4.136 5 C 0.517 3.483 6 N -0.835 5.835 7 O -0.578 6.578 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.548 6.548 11 C -0.110 4.110 12 C 0.075 3.925 13 H 0.002 0.998 14 C -0.551 4.551 15 H 0.038 0.962 16 C -0.024 4.024 17 N -0.946 5.946 18 Si 1.093 2.907 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.055 4.055 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.419 0.581 37 H 0.407 0.593 38 H 0.413 0.587 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.261 0.739 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.134 0.866 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 -13.627 -15.277 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.108 3.892 3 C -0.223 4.223 4 C -0.176 4.176 5 C 0.302 3.698 6 N -0.399 5.399 7 O -0.458 6.458 8 N -0.376 5.376 9 C 0.298 3.702 10 O -0.424 6.424 11 C -0.150 4.150 12 C 0.056 3.944 13 H 0.020 0.980 14 C -0.589 4.589 15 H 0.057 0.943 16 C -0.222 4.222 17 N -0.584 5.584 18 Si 0.918 3.082 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.056 4.056 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.238 0.762 38 H 0.250 0.750 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.152 0.848 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.945 -11.524 -14.487 20.559 hybrid contribution 1.321 -0.501 -0.664 1.561 sum 10.267 -12.024 -15.151 21.898 Atomic orbital electron populations 1.22335 0.96102 1.01477 1.02572 1.19804 0.93274 0.91937 0.84207 1.22324 1.00363 0.97051 1.02605 1.21852 1.04746 1.01438 0.89574 1.20589 0.79116 0.83727 0.86322 1.43674 1.55269 1.34054 1.06923 1.90691 1.39675 1.28447 1.86984 1.45973 1.54785 1.32643 1.04159 1.20898 0.79616 0.84418 0.85246 1.90710 1.37210 1.27645 1.86800 1.21565 1.00797 1.00447 0.92226 1.17676 0.94662 0.93465 0.88620 0.97973 1.21761 0.91574 1.09690 1.35899 0.94334 1.26619 1.09364 0.92803 0.93406 1.70807 1.11660 1.34850 1.41103 0.83258 0.72171 0.76643 0.76114 1.21578 1.21635 1.18978 1.20638 0.92659 0.94241 0.98017 1.21011 0.99645 0.95009 0.98320 1.21410 0.97328 1.00764 0.94735 1.21304 0.99869 0.94281 1.00770 1.21294 1.00326 0.96290 0.96429 1.21126 0.99485 0.99117 0.97474 0.94929 0.90244 0.92579 0.92216 0.90234 0.94929 0.84903 0.85109 0.74899 0.76188 0.74978 0.89031 0.88553 0.92897 0.86753 0.83920 0.83572 0.84790 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 8.10 71.98 0.58 -5.18 16 2 C 0.19 5.36 0.80 3.60 0.00 5.36 16 3 C -0.17 -5.48 8.10 71.98 0.58 -4.90 16 4 C -0.14 -2.00 4.88 29.85 0.15 -1.86 16 5 C 0.52 9.28 7.51 87.66 0.66 9.94 16 6 N -0.83 -6.78 8.87 -173.53 -1.54 -8.32 16 7 O -0.58 -16.69 12.18 -3.03 -0.04 -16.73 16 8 N -0.72 -19.94 5.11 -422.92 -2.16 -22.10 16 9 C 0.51 20.52 7.00 87.66 0.61 21.14 16 10 O -0.55 -28.77 11.23 -3.04 -0.03 -28.80 16 11 C -0.11 -4.24 4.95 29.85 0.15 -4.09 16 12 C 0.08 3.74 1.23 -12.28 -0.02 3.72 16 13 H 0.00 0.12 6.59 -2.39 -0.02 0.10 16 14 C -0.55 -31.15 6.35 25.60 0.16 -30.99 16 15 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 16 C -0.02 -1.43 5.45 84.65 0.46 -0.97 16 17 N -0.95 -61.60 13.56 21.44 0.29 -61.31 16 18 Si 1.09 55.68 29.91 68.60 2.05 57.73 16 19 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 20 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.05 -2.47 4.53 -19.87 -0.09 -2.56 16 23 C -0.12 -4.82 8.90 22.27 0.20 -4.62 16 24 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.14 -4.47 10.05 22.27 0.22 -4.24 16 26 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 27 C -0.15 -6.57 9.18 22.27 0.20 -6.37 16 28 H 0.03 1.45 6.17 -2.38 -0.01 1.44 16 29 H 0.08 2.78 5.51 -2.39 -0.01 2.76 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 2.70 5.51 -2.39 -0.01 2.68 16 33 H 0.03 1.38 6.17 -2.39 -0.01 1.37 16 34 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.42 0.25 8.83 -92.71 -0.82 -0.57 16 37 H 0.41 3.00 8.93 -92.71 -0.83 2.17 16 38 H 0.41 7.44 8.47 -92.71 -0.79 6.66 16 39 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.10 3.32 7.96 -2.39 -0.02 3.30 16 41 H 0.26 16.93 6.24 -92.71 -0.58 16.35 16 42 H 0.11 4.43 7.85 -2.91 -0.02 4.41 16 43 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.09 4.18 7.95 -2.91 -0.02 4.15 16 Total: -1.00 -88.16 368.20 1.68 -86.47 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -1.22 Total: 26.67 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.33 Total: -33.61 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.41 Total: -91.73 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.07 Total: -45.53 kcal Atomic # 14 Polarization: 55.68 SS G_CDS: 2.05 Total: 57.73 kcal Total: -88.16 1.68 -86.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356778917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.425 kcal (2) G-P(sol) polarization free energy of solvation -88.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds