Wall clock time and date at job start Tue Mar 31 2020 12:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47132 * 2 1 4 4 C 1.52995 * 109.47550 * 239.99814 * 2 1 3 5 5 C 1.50703 * 109.47313 * 59.99774 * 4 2 1 6 6 N 1.34766 * 120.00470 * 180.02562 * 5 4 2 7 7 O 1.21285 * 119.99320 * 0.02562 * 5 4 2 8 8 N 1.46506 * 109.46876 * 119.99704 * 2 1 3 9 9 C 1.34770 * 119.99885 * 300.00248 * 8 2 1 10 10 O 1.21284 * 120.00136 * 359.97438 * 9 8 2 11 11 C 1.50703 * 120.00077 * 180.02562 * 9 8 2 12 12 C 1.52995 * 109.47313 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47575 * 53.80284 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80232 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80520 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38238 * 119.99736 * 179.81082 * 23 22 12 25 25 C 1.38232 * 120.00406 * 0.39259 * 24 23 22 26 26 C 1.38239 * 119.99545 * 359.86027 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95262 * 26 25 24 28 28 H 1.08996 * 109.47168 * 300.00113 * 1 2 3 29 29 H 1.09005 * 109.46808 * 60.00010 * 1 2 3 30 30 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47001 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46581 * 299.99686 * 3 2 1 33 33 H 1.08996 * 109.47186 * 59.99898 * 3 2 1 34 34 H 1.08995 * 109.47458 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47154 * 300.00734 * 4 2 1 36 36 H 0.97002 * 119.99723 * 0.02562 * 6 5 4 37 37 H 0.96996 * 120.00479 * 180.02562 * 6 5 4 38 38 H 0.96995 * 119.99336 * 120.00579 * 8 2 1 39 39 H 1.09004 * 109.46905 * 59.99256 * 11 9 8 40 40 H 1.09003 * 109.46623 * 300.00340 * 11 9 8 41 41 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 43 43 H 1.08008 * 119.99812 * 180.22764 * 24 23 22 44 44 H 1.07995 * 120.00043 * 179.83073 * 25 24 23 45 45 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 7 1.8630 -0.4717 -3.7037 7 8 0.8408 0.9754 -2.3684 8 7 2.0183 -0.6906 1.1963 9 6 1.6926 -0.2301 2.4203 10 8 0.9957 0.7563 2.5315 11 6 2.1954 -0.9401 3.6508 12 6 1.6847 -0.2193 4.9000 13 1 0.6003 -0.1230 4.8462 14 6 2.3073 1.1509 4.9791 15 1 3.3230 1.3026 4.6447 16 6 1.5803 2.2106 5.4784 17 7 2.1141 3.4118 5.5218 18 14 -0.1628 1.9403 6.0932 19 1 -1.1227 2.2030 4.9911 20 1 -0.3124 0.5373 6.5562 21 1 -0.4389 2.8659 7.2212 22 6 2.0584 -1.0124 6.1257 23 6 3.3871 -1.1491 6.4819 24 6 3.7295 -1.8734 7.6085 25 6 2.7440 -2.4677 8.3742 26 6 1.4157 -2.3354 8.0149 27 6 1.0730 -1.6079 6.8906 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7216 -1.2489 35 1 1.6767 -1.7489 -1.2492 36 1 2.4201 -1.2607 -3.7927 37 1 1.5400 -0.0143 -4.4957 38 1 2.5760 -1.4792 1.1072 39 1 3.2854 -0.9397 3.6507 40 1 1.8325 -1.9679 3.6509 41 1 1.6025 4.1574 5.8728 42 1 4.1573 -0.6878 5.8817 43 1 4.7674 -1.9771 7.8889 44 1 3.0119 -3.0359 9.2527 45 1 0.6457 -2.8002 8.6129 46 1 0.0351 -1.5042 6.6102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356778918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:58 Heat of formation + Delta-G solvation = -52.824520 kcal Electronic energy + Delta-G solvation = -27232.344568 eV Core-core repulsion = 23507.708294 eV Total energy + Delta-G solvation = -3724.636274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35094 -39.10795 -38.38833 -35.79307 -33.93765 -33.93446 -31.83048 -31.33987 -30.18184 -28.84013 -28.02917 -26.82749 -25.81692 -22.81122 -21.97626 -21.69576 -20.34799 -19.27891 -19.00433 -17.43731 -17.03690 -16.87693 -16.46949 -15.87134 -15.42175 -15.00250 -14.59228 -14.51088 -14.12220 -14.00146 -13.62786 -13.49275 -13.25450 -12.96955 -12.72066 -12.47550 -12.29798 -11.96944 -11.86459 -11.66472 -11.57606 -11.28128 -11.02399 -10.80946 -10.70211 -10.66747 -10.50362 -10.31648 -9.92814 -9.81397 -9.78291 -9.56324 -9.07284 -8.66140 -8.49859 -8.34911 -8.17722 -7.78279 -5.92397 -3.89616 2.11912 2.16917 2.45236 3.14714 3.48406 3.52586 3.56308 3.57375 3.89142 4.54560 4.56201 4.63501 4.87098 4.91234 5.24957 5.36211 5.52262 5.53813 5.58163 5.69047 5.71239 5.74694 5.97844 6.06135 6.11790 6.24446 6.25244 6.27486 6.34549 6.35676 6.36631 6.53788 6.66236 6.71739 6.81693 6.86627 6.96957 7.04837 7.06485 7.13819 7.16463 7.30167 7.61554 7.76479 7.87277 8.08982 8.16490 8.58560 9.06034 9.14001 9.72740 11.20638 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.003710 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.176589 B = 7544.670972 C = 8469.404091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.196 3.804 3 C -0.173 4.173 4 C -0.147 4.147 5 C 0.521 3.479 6 N -0.860 5.860 7 O -0.523 6.523 8 N -0.745 5.745 9 C 0.517 3.483 10 O -0.492 6.492 11 C -0.117 4.117 12 C 0.057 3.943 13 H 0.050 0.950 14 C -0.486 4.486 15 H 0.070 0.930 16 C 0.087 3.913 17 N -0.899 5.899 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.256 1.256 21 H -0.296 1.296 22 C -0.039 4.039 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.400 0.600 37 H 0.400 0.600 38 H 0.389 0.611 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -15.212 -12.834 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.110 3.890 3 C -0.231 4.231 4 C -0.187 4.187 5 C 0.306 3.694 6 N -0.424 5.424 7 O -0.399 6.399 8 N -0.400 5.400 9 C 0.304 3.696 10 O -0.364 6.364 11 C -0.157 4.157 12 C 0.037 3.963 13 H 0.068 0.932 14 C -0.523 4.523 15 H 0.088 0.912 16 C -0.115 4.115 17 N -0.537 5.537 18 Si 0.697 3.303 19 H -0.202 1.202 20 H -0.180 1.180 21 H -0.223 1.223 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.153 4.153 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.222 0.778 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.364 -13.625 -12.393 18.469 hybrid contribution -0.316 -0.633 0.002 0.708 sum 1.047 -14.258 -12.391 18.919 Atomic orbital electron populations 1.22429 0.94170 1.01232 1.05185 1.19801 0.94599 0.92488 0.82140 1.22432 0.99785 0.95581 1.05322 1.21918 1.02873 1.00795 0.93153 1.20405 0.79678 0.84329 0.84975 1.43901 1.56439 1.33903 1.08138 1.90699 1.37051 1.25926 1.86211 1.46279 1.55807 1.32337 1.05547 1.20701 0.80425 0.84842 0.83679 1.90692 1.35629 1.24182 1.85861 1.21669 1.01889 0.98162 0.93991 1.18124 0.97727 0.94284 0.86123 0.93221 1.20570 1.00688 0.89300 1.41781 0.91199 1.24864 0.97424 0.94829 0.94426 1.69886 1.37570 0.99869 1.46371 0.86970 0.86376 0.78658 0.78260 1.20184 1.18044 1.22282 1.20790 0.92723 0.92034 0.98434 1.20982 0.96620 0.97586 0.96660 1.21056 0.98466 0.99075 0.96079 1.20855 0.93280 1.02455 1.00210 1.20963 0.95900 1.00255 0.97476 1.21153 0.99160 0.98719 0.96310 0.90171 0.89933 0.94052 0.93844 0.90130 0.89638 0.88345 0.88494 0.77222 0.76910 0.77820 0.89935 0.91583 0.92940 0.86206 0.87238 0.87488 0.87448 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.10 37.16 0.30 -2.44 16 2 C 0.20 2.79 0.80 -131.82 -0.11 2.68 16 3 C -0.17 -2.99 8.10 37.16 0.30 -2.68 16 4 C -0.15 -1.35 4.88 -27.88 -0.14 -1.49 16 5 C 0.52 5.35 7.51 -10.99 -0.08 5.27 16 6 N -0.86 -5.01 8.87 31.22 0.28 -4.73 16 7 O -0.52 -7.71 12.18 5.55 0.07 -7.64 16 8 N -0.74 -10.65 5.11 -47.60 -0.24 -10.89 16 9 C 0.52 9.92 7.01 -10.99 -0.08 9.84 16 10 O -0.49 -11.86 11.23 5.55 0.06 -11.79 16 11 C -0.12 -2.14 4.96 -27.88 -0.14 -2.28 16 12 C 0.06 1.29 1.17 -92.92 -0.11 1.18 16 13 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 14 C -0.49 -13.31 6.87 -34.44 -0.24 -13.54 16 15 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 16 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 17 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 18 Si 0.87 22.88 27.00 -169.99 -4.59 18.29 16 19 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.26 -6.21 4.72 56.52 0.27 -5.94 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 22 C -0.04 -0.82 4.65 -104.62 -0.49 -1.30 16 23 C -0.10 -1.95 8.93 -39.58 -0.35 -2.31 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 27 C -0.14 -2.65 8.70 -39.59 -0.34 -3.00 16 28 H 0.08 1.56 6.17 -51.93 -0.32 1.24 16 29 H 0.08 1.34 5.51 -51.93 -0.29 1.05 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.39 5.51 -51.93 -0.29 1.10 16 33 H 0.08 1.85 6.17 -51.93 -0.32 1.53 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 1.04 8.83 -40.82 -0.36 0.68 16 37 H 0.40 2.06 8.93 -40.82 -0.36 1.70 16 38 H 0.39 4.07 8.47 -40.82 -0.35 3.72 16 39 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.12 2.31 7.87 -52.49 -0.41 1.90 16 43 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 46 H 0.11 2.14 7.12 -52.48 -0.37 1.76 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -36.55 363.42 -7.75 -44.30 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.82 Total: 10.19 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.76 Total: -15.61 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.81 Total: -43.21 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.13 Total: -19.43 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.59 Total: 18.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.55 -7.75 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356778918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.525 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds