Wall clock time and date at job start Tue Mar 31 2020 13:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 N 1.46508 * 109.46830 * 119.99662 * 2 1 3 5 5 C 1.34780 * 119.99852 * 299.99890 * 4 2 1 6 6 O 1.21557 * 120.00061 * 0.02562 * 5 4 2 7 7 C 1.47845 * 119.99555 * 180.02562 * 5 4 2 8 8 C 1.39575 * 120.13807 * 180.02562 * 7 5 4 9 9 C 1.37966 * 119.85100 * 179.97438 * 8 7 5 10 10 C 1.38360 * 120.14194 * 359.97438 * 9 8 7 11 11 C 1.38356 * 120.29558 * 0.02562 * 10 9 8 12 12 C 1.37965 * 120.14370 * 359.97438 * 11 10 9 13 13 C 1.50694 * 109.47546 * 239.99403 * 2 1 3 14 14 O 1.21285 * 119.99651 * 25.00218 * 13 2 1 15 15 N 1.34775 * 120.00611 * 204.99791 * 13 2 1 16 16 C 1.46499 * 120.00162 * 179.97438 * 15 13 2 17 17 C 1.53003 * 109.46594 * 180.02562 * 16 15 13 18 18 C 1.53008 * 109.46820 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.46926 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99890 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99792 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46870 * 60.00164 * 23 21 19 25 25 H 1.48500 * 109.47190 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47126 * 300.00065 * 23 21 19 27 27 H 1.08991 * 109.47360 * 300.00062 * 1 2 3 28 28 H 1.09000 * 109.46889 * 60.00801 * 1 2 3 29 29 H 1.09009 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46822 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46710 * 299.99309 * 3 2 1 32 32 H 1.08991 * 109.47179 * 59.99827 * 3 2 1 33 33 H 0.97002 * 119.99932 * 120.00660 * 4 2 1 34 34 H 1.07998 * 120.08057 * 359.70005 * 8 7 5 35 35 H 1.08000 * 119.93065 * 180.02562 * 9 8 7 36 36 H 1.08003 * 119.85327 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.93243 * 180.02562 * 11 10 9 38 38 H 1.08003 * 120.07139 * 179.97438 * 12 11 10 39 39 H 0.97004 * 119.99526 * 0.02562 * 15 13 2 40 40 H 1.08993 * 109.47643 * 300.00159 * 16 15 13 41 41 H 1.09004 * 109.46915 * 60.00812 * 16 15 13 42 42 H 1.09002 * 109.47177 * 300.00131 * 17 16 15 43 43 H 1.09000 * 109.47416 * 60.00311 * 17 16 15 44 44 H 1.09002 * 109.46960 * 299.99783 * 18 17 16 45 45 H 1.09000 * 109.47264 * 59.99738 * 18 17 16 46 46 H 0.96992 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6927 -0.2300 2.4204 6 8 0.9935 0.7581 2.5318 7 6 2.1859 -0.9266 3.6275 8 6 1.8501 -0.4525 4.8966 9 6 2.3132 -1.1075 6.0191 10 6 3.1084 -2.2322 5.8887 11 6 3.4450 -2.7073 4.6336 12 6 2.9885 -2.0617 3.5031 13 6 2.0324 -0.7105 -1.2303 14 8 1.3371 -0.7706 -2.2222 15 7 3.2544 -1.2790 -1.2285 16 6 3.7425 -1.9702 -2.4245 17 6 5.1450 -2.5210 -2.1583 18 6 5.6551 -3.2423 -3.4076 19 6 7.0361 -3.7854 -3.1453 20 1 7.5034 -3.6311 -2.1839 21 6 7.7030 -4.4792 -4.1326 22 7 7.1337 -4.6675 -5.3032 23 14 9.4152 -5.1518 -3.8078 24 1 9.3648 -6.1055 -2.6707 25 1 9.9097 -5.8530 -5.0198 26 1 10.3318 -4.0320 -3.4745 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 2.5761 -1.4792 1.1074 34 1 1.2327 0.4276 4.9998 35 1 2.0538 -0.7420 7.0017 36 1 3.4687 -2.7411 6.7706 37 1 4.0657 -3.5860 4.5387 38 1 3.2522 -2.4333 2.5239 39 1 3.8104 -1.2311 -0.4351 40 1 3.0700 -2.7923 -2.6689 41 1 3.7791 -1.2701 -3.2592 42 1 5.8177 -1.6990 -1.9136 43 1 5.1081 -3.2211 -1.3237 44 1 4.9823 -4.0642 -3.6527 45 1 5.6920 -2.5419 -4.2419 46 1 7.6027 -5.1559 -5.9976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358982043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:22 Heat of formation + Delta-G solvation = -81.859559 kcal Electronic energy + Delta-G solvation = -26106.524327 eV Core-core repulsion = 22380.628999 eV Total energy + Delta-G solvation = -3725.895328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03135 -40.70035 -39.26968 -37.13695 -36.70107 -35.22209 -33.50576 -32.99446 -31.85855 -31.25007 -28.86373 -28.31788 -25.94578 -24.97958 -23.78283 -23.31426 -22.39934 -21.56208 -20.57156 -19.79556 -18.51633 -18.20610 -17.26830 -16.97846 -16.66626 -16.44726 -16.41145 -16.11834 -15.84435 -15.51467 -15.31285 -15.07308 -14.72830 -14.35111 -14.28675 -14.23193 -13.77471 -13.62733 -13.46526 -13.41700 -13.16571 -12.94527 -12.71083 -12.55761 -12.52372 -12.44142 -12.41087 -12.00498 -11.67355 -11.65120 -11.30624 -11.16305 -10.65065 -10.53691 -10.43497 -10.24135 -9.93274 -9.90077 -8.18559 -6.29921 -0.13795 0.43827 1.25211 1.42996 1.45492 1.53287 1.80465 1.92644 1.95817 2.43083 2.91762 3.15602 3.37879 3.59328 3.82132 3.85064 3.93036 4.03995 4.14681 4.20705 4.26068 4.48399 4.51170 4.54032 4.58885 4.63337 4.66983 4.74780 4.87833 4.92502 4.93834 5.06885 5.10101 5.15602 5.16944 5.21519 5.32484 5.36357 5.46669 5.52706 5.54202 5.71646 5.85302 5.96442 6.22321 6.28246 6.37521 6.87919 6.97953 7.05981 7.39921 8.93282 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.002872 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.609426 B = 9747.117588 C =11853.567388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.170 3.830 3 C -0.156 4.156 4 N -0.714 5.714 5 C 0.567 3.433 6 O -0.555 6.555 7 C -0.156 4.156 8 C -0.074 4.074 9 C -0.131 4.131 10 C -0.092 4.092 11 C -0.132 4.132 12 C -0.091 4.091 13 C 0.515 3.485 14 O -0.564 6.564 15 N -0.708 5.708 16 C 0.127 3.873 17 C -0.102 4.102 18 C 0.024 3.976 19 C -0.540 4.540 20 H 0.068 0.932 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.266 1.266 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.412 0.588 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.074 0.926 44 H -0.007 1.007 45 H -0.010 1.010 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 7.357 24.747 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.081 3.919 3 C -0.214 4.214 4 N -0.370 5.370 5 C 0.357 3.643 6 O -0.434 6.434 7 C -0.159 4.159 8 C -0.093 4.093 9 C -0.149 4.149 10 C -0.110 4.110 11 C -0.149 4.149 12 C -0.109 4.109 13 C 0.300 3.700 14 O -0.442 6.442 15 N -0.361 5.361 16 C 0.004 3.996 17 C -0.140 4.140 18 C -0.014 4.014 19 C -0.578 4.578 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.214 1.214 26 H -0.191 1.191 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.248 0.752 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.011 0.989 45 H 0.009 0.991 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.873 7.928 23.896 27.044 hybrid contribution 1.182 -0.794 -0.450 1.494 sum -8.691 7.135 23.446 26.003 Atomic orbital electron populations 1.22003 0.91663 1.02837 1.03906 1.20475 0.96394 0.93813 0.81211 1.22160 1.02056 0.92663 1.04550 1.45988 1.54211 1.32289 1.04476 1.18514 0.79140 0.83385 0.83260 1.90702 1.38718 1.27058 1.86961 1.19889 1.03884 0.98999 0.93092 1.21396 0.97394 0.99202 0.91323 1.21466 0.98191 0.96149 0.99113 1.21798 0.95281 0.95243 0.98631 1.21496 1.00373 1.00929 0.92136 1.21574 0.95230 0.93557 1.00573 1.20771 0.81467 0.78285 0.89475 1.90730 1.57544 1.59824 1.36102 1.46049 1.17223 1.55344 1.17455 1.21345 0.95747 0.95648 0.86900 1.21617 0.93039 0.99880 0.99494 1.18935 0.95052 0.94229 0.93174 1.21662 1.02032 1.34615 0.99527 0.91364 1.26009 1.02558 0.96641 0.94859 1.70104 1.39931 1.42421 1.05151 0.85499 0.79169 0.78763 0.77613 1.18852 1.21421 1.19089 0.89785 0.90879 0.92611 0.91000 0.90788 0.89419 0.75201 0.85278 0.83176 0.82940 0.83210 0.84235 0.75036 0.92545 0.92931 0.91385 0.90779 0.98854 0.99119 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 7.93 71.98 0.57 -2.90 16 2 C 0.17 3.82 0.98 2.85 0.00 3.82 16 3 C -0.16 -3.28 8.38 71.98 0.60 -2.67 16 4 N -0.71 -13.11 4.81 -429.15 -2.06 -15.17 16 5 C 0.57 11.75 7.19 86.79 0.62 12.37 16 6 O -0.56 -14.34 12.55 -3.89 -0.05 -14.39 16 7 C -0.16 -2.69 5.87 -20.09 -0.12 -2.81 16 8 C -0.07 -1.19 9.60 22.53 0.22 -0.98 16 9 C -0.13 -1.49 10.03 22.23 0.22 -1.27 16 10 C -0.09 -0.89 10.04 22.33 0.22 -0.66 16 11 C -0.13 -1.44 10.03 22.23 0.22 -1.21 16 12 C -0.09 -1.21 9.54 22.53 0.21 -1.00 16 13 C 0.51 14.15 6.65 87.66 0.58 14.73 16 14 O -0.56 -20.27 16.10 -3.05 -0.05 -20.31 16 15 N -0.71 -17.58 5.25 -463.06 -2.43 -20.01 16 16 C 0.13 4.12 5.67 86.38 0.49 4.61 16 17 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 18 C 0.02 1.18 4.97 29.85 0.15 1.33 16 19 C -0.54 -29.05 9.11 25.60 0.23 -28.82 16 20 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 21 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 22 N -0.94 -56.15 13.29 21.45 0.28 -55.87 16 23 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H 0.08 2.03 6.16 -2.39 -0.01 2.02 16 28 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.96 6.16 -2.39 -0.01 1.94 16 33 H 0.41 5.89 5.28 -92.71 -0.49 5.40 16 34 H 0.13 2.16 7.65 -2.91 -0.02 2.14 16 35 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.14 1.36 6.41 -2.91 -0.02 1.34 16 39 H 0.41 7.56 7.22 -92.71 -0.67 6.89 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.73 379.83 2.42 -69.32 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.16 Total: 20.44 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.86 Total: -8.62 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.21 Total: -91.06 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.10 Total: -34.71 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.73 2.42 -69.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358982043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.542 kcal (2) G-P(sol) polarization free energy of solvation -71.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds