Wall clock time and date at job start Tue Mar 31 2020 12:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 C 1.53001 * 109.47308 * 120.00132 * 2 1 3 5 5 H 1.09000 * 109.47223 * 185.06927 * 4 2 1 6 6 N 1.46897 * 109.47278 * 65.06800 * 4 2 1 7 7 C 1.46897 * 110.99948 * 86.33923 * 6 4 2 8 8 C 1.53002 * 109.47493 * 174.85345 * 7 6 4 9 9 C 1.52997 * 109.47317 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46679 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00115 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99654 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99915 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47329 * 90.00204 * 14 12 10 16 16 H 1.48502 * 109.46878 * 210.00198 * 14 12 10 17 17 H 1.48501 * 109.47407 * 329.99869 * 14 12 10 18 18 C 1.50706 * 109.47195 * 305.06803 * 4 2 1 19 19 C 1.38643 * 119.76836 * 79.72239 * 18 4 2 20 20 C 1.37762 * 120.39700 * 179.76085 * 19 18 4 21 21 C 1.39538 * 119.72960 * 0.51749 * 20 19 18 22 22 N 1.36157 * 133.71252 * 179.74281 * 21 20 19 23 23 C 1.30620 * 108.72197 * 179.97438 * 22 21 20 24 24 O 1.35185 * 124.93218 * 179.97438 * 23 22 21 25 25 O 1.34380 * 110.13135 * 0.02562 * 23 22 21 26 26 C 1.35263 * 108.19370 * 0.02562 * 25 23 22 27 27 C 1.38003 * 119.76979 * 260.00394 * 18 4 2 28 28 H 1.09003 * 109.47117 * 299.99753 * 1 2 3 29 29 H 1.09001 * 109.47455 * 59.99524 * 1 2 3 30 30 H 1.08996 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47117 * 240.00247 * 2 1 3 32 32 H 1.09006 * 109.46870 * 174.42960 * 3 2 1 33 33 H 1.08999 * 109.47450 * 294.43056 * 3 2 1 34 34 H 1.09001 * 109.47325 * 54.43302 * 3 2 1 35 35 H 1.00906 * 110.99653 * 322.38711 * 6 4 2 36 36 H 1.08998 * 109.47427 * 54.84874 * 7 6 4 37 37 H 1.09002 * 109.47059 * 294.85207 * 7 6 4 38 38 H 1.08999 * 109.46356 * 300.00031 * 8 7 6 39 39 H 1.08998 * 109.47168 * 59.99371 * 8 7 6 40 40 H 1.08998 * 109.46573 * 299.99493 * 9 8 7 41 41 H 1.08993 * 109.47262 * 59.99665 * 9 8 7 42 42 H 0.96997 * 120.00009 * 179.97438 * 13 12 10 43 43 H 1.08003 * 119.80454 * 0.02562 * 19 18 4 44 44 H 1.08000 * 120.13342 * 180.23525 * 20 19 18 45 45 H 0.96696 * 113.99622 * 89.97537 * 24 23 22 46 46 H 1.08002 * 120.05608 * 359.97438 * 27 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1262 -0.6433 1.2958 6 7 1.6529 -2.1371 1.1896 7 6 2.6451 -2.9232 0.4444 8 6 2.2763 -4.4066 0.5127 9 6 3.3101 -5.2254 -0.2629 10 6 2.9470 -6.6865 -0.1950 11 1 2.0673 -6.9997 0.3475 12 6 3.7387 -7.6235 -0.8245 13 7 3.4223 -8.8986 -0.7649 14 14 5.2608 -7.0818 -1.7622 15 1 6.4297 -7.0738 -0.8464 16 1 5.5148 -8.0249 -2.8808 17 1 5.0479 -5.7160 -2.3050 18 6 1.4378 -0.0871 2.4766 19 6 0.1428 -0.4088 2.8526 20 6 -0.4187 0.1595 3.9750 21 6 0.3179 1.0724 4.7306 22 7 0.0544 1.7911 5.8566 23 6 1.1058 2.5075 6.1524 24 8 1.1999 3.3441 7.2101 25 8 2.0799 2.2928 5.2519 26 6 1.6256 1.4000 4.3431 27 6 2.1773 0.8143 3.2149 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1254 1.4442 0.0998 33 1 1.7603 1.9268 -0.9356 34 1 1.5975 1.9844 0.8359 35 1 0.7326 -2.2437 0.7897 36 1 3.6314 -2.7735 0.8834 37 1 2.6577 -2.5996 -0.5964 38 1 2.2637 -4.7301 1.5535 39 1 1.2899 -4.5563 0.0738 40 1 3.3230 -4.9018 -1.3037 41 1 4.2962 -5.0755 0.1765 42 1 3.9790 -9.5577 -1.2081 43 1 -0.4279 -1.1125 2.2646 44 1 -1.4266 -0.0971 4.2661 45 1 1.5383 2.9257 8.0135 46 1 3.1841 1.0634 2.9137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359378793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:23 Heat of formation + Delta-G solvation = -37.948967 kcal Electronic energy + Delta-G solvation = -26174.282514 eV Core-core repulsion = 22450.291293 eV Total energy + Delta-G solvation = -3723.991222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.30931 -40.68253 -38.98247 -37.83015 -36.35013 -35.44525 -34.60080 -32.78730 -31.90232 -30.60199 -28.46387 -28.11064 -25.94843 -24.72707 -23.75779 -23.35714 -22.94651 -21.79337 -20.93690 -20.14778 -18.89132 -18.84991 -18.35687 -17.70453 -17.13945 -16.43254 -16.28250 -15.98186 -15.79439 -15.35597 -15.11319 -15.05850 -14.95639 -14.64241 -14.29444 -13.83295 -13.57259 -13.51052 -13.44119 -13.17345 -13.00789 -12.86068 -12.74218 -12.52599 -12.42444 -12.31790 -11.96662 -11.75948 -11.70926 -11.66509 -11.57901 -11.46766 -11.31205 -11.20196 -10.73551 -9.78612 -9.42009 -9.21742 -8.26599 -6.30526 -0.44071 0.19582 0.83979 1.23220 1.38194 1.39942 1.51926 2.38622 2.38749 2.56599 3.08933 3.21394 3.42711 3.71393 3.87409 3.94364 3.98660 4.11788 4.20447 4.22983 4.30746 4.37605 4.42326 4.63320 4.71275 4.73803 4.77582 4.84351 4.93312 4.97459 5.01100 5.02905 5.06268 5.07001 5.17376 5.23260 5.25292 5.38719 5.44150 5.46194 5.59291 5.63498 5.68029 5.70856 6.12784 6.20463 6.33367 6.40996 6.52146 6.78561 7.33970 8.90434 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002419 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.553836 B =11573.722656 C =12044.783107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.133 3.867 5 H 0.094 0.906 6 N -0.687 5.687 7 C 0.072 3.928 8 C -0.090 4.090 9 C -0.011 4.011 10 C -0.531 4.531 11 H 0.029 0.971 12 C -0.002 4.002 13 N -0.955 5.955 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.242 1.242 18 C -0.024 4.024 19 C -0.087 4.087 20 C -0.070 4.070 21 C 0.004 3.996 22 N -0.491 5.491 23 C 0.417 3.583 24 O -0.407 6.407 25 O -0.235 6.235 26 C 0.004 3.996 27 C -0.090 4.090 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.348 0.652 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.265 0.735 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.444 0.556 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 28.126 8.400 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.023 3.977 5 H 0.112 0.888 6 N -0.318 5.318 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.049 4.049 10 C -0.569 4.569 11 H 0.047 0.953 12 C -0.198 4.198 13 N -0.596 5.596 14 Si 0.777 3.223 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.165 1.165 18 C -0.025 4.025 19 C -0.106 4.106 20 C -0.088 4.088 21 C -0.107 4.107 22 N -0.235 5.235 23 C 0.167 3.833 24 O -0.219 6.219 25 O -0.129 6.129 26 C -0.045 4.045 27 C -0.109 4.109 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.310 0.690 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.073 28.265 9.008 29.944 hybrid contribution 1.139 -0.382 -0.810 1.449 sum -2.934 27.883 8.199 29.211 Atomic orbital electron populations 1.22070 0.94476 1.02149 1.02722 1.21718 0.97133 0.97454 0.97430 1.21805 1.01289 0.94966 1.02055 1.20552 0.99776 0.86812 0.90605 0.88832 1.60505 1.06170 1.07313 1.57837 1.21904 0.95654 0.92253 0.95906 1.21243 0.98458 0.93524 0.99579 1.19498 0.95911 0.93246 0.96225 1.21552 1.10431 0.92574 1.32391 0.95293 1.26098 1.01661 0.94681 0.97326 1.70085 1.41096 1.02268 1.46111 0.85598 0.78881 0.79402 0.78376 1.19297 1.21229 1.16535 1.19632 0.93631 0.93925 0.95309 1.21112 0.94949 0.98879 0.95649 1.20505 1.00545 0.94364 0.93418 1.19861 0.94356 1.01585 0.94920 1.71001 1.25941 1.10607 1.15929 1.22610 0.81647 0.90398 0.88625 1.84877 1.85860 1.32349 1.18825 1.84452 1.41909 1.52390 1.34193 1.20110 0.95346 0.94400 0.94672 1.19807 1.01632 0.98097 0.91375 0.91656 0.91937 0.92165 0.90655 0.92045 0.92093 0.92850 0.83133 0.91062 0.94367 0.93506 0.93391 0.96033 0.96371 0.92613 0.82944 0.83251 0.69020 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 7.75 71.98 0.56 -1.63 16 2 C -0.12 -1.76 2.79 -10.79 -0.03 -1.79 16 3 C -0.14 -1.93 8.76 71.98 0.63 -1.30 16 4 C 0.13 2.33 2.09 44.17 0.09 2.42 16 5 H 0.09 1.63 7.54 -2.39 -0.02 1.61 16 6 N -0.69 -15.09 5.66 -495.45 -2.80 -17.89 16 7 C 0.07 1.93 5.51 86.30 0.48 2.40 16 8 C -0.09 -3.31 5.46 30.59 0.17 -3.14 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 11 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 12 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 13 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 14 Si 0.95 43.90 27.47 68.60 1.88 45.78 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.24 -10.12 6.54 99.48 0.65 -9.46 16 18 C -0.02 -0.44 3.89 -19.82 -0.08 -0.51 16 19 C -0.09 -1.55 6.93 22.25 0.15 -1.40 16 20 C -0.07 -1.38 10.10 22.47 0.23 -1.15 16 21 C 0.00 0.10 7.23 39.28 0.28 0.38 16 22 N -0.49 -11.89 11.37 -422.74 -4.81 -16.69 16 23 C 0.42 8.46 9.54 130.42 1.24 9.71 16 24 O -0.41 -5.06 13.62 -62.38 -0.85 -5.91 16 25 O -0.23 -5.21 10.78 9.29 0.10 -5.11 16 26 C 0.00 0.09 7.42 22.84 0.17 0.26 16 27 C -0.09 -1.71 8.91 22.29 0.20 -1.51 16 28 H 0.06 0.92 5.63 -2.39 -0.01 0.91 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 6.23 -2.39 -0.01 0.81 16 31 H 0.08 1.22 7.53 -2.39 -0.02 1.20 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.77 7.11 -2.39 -0.02 0.75 16 35 H 0.35 6.96 5.99 -89.69 -0.54 6.42 16 36 H 0.07 1.90 7.93 -2.39 -0.02 1.88 16 37 H 0.04 0.96 7.56 -2.39 -0.02 0.94 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 41 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.15 2.33 6.36 -2.91 -0.02 2.31 16 44 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.44 0.02 9.06 -74.06 -0.67 -0.65 16 46 H 0.15 2.28 8.03 -2.91 -0.02 2.25 16 Total: -1.00 -73.87 367.97 -1.51 -75.38 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.25 Total: 12.22 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.92 Total: -27.70 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -7.31 Total: -94.66 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.75 Total: -11.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -73.87 -1.51 -75.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359378793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.429 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds