Wall clock time and date at job start Tue Mar 31 2020 12:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47394 * 119.99957 * 8 6 4 11 11 H 1.48499 * 109.47384 * 240.00136 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.47473 * 34.99539 * 14 13 12 16 16 C 1.50703 * 109.46742 * 274.99779 * 14 13 12 17 17 N 1.33234 * 125.53007 * 314.69442 * 16 14 13 18 18 C 1.30829 * 109.83249 * 179.85750 * 17 16 14 19 19 N 1.34437 * 108.07726 * 0.40201 * 18 17 16 20 20 H 0.96993 * 126.82617 * 179.79103 * 19 18 17 21 21 N 1.30716 * 125.52435 * 135.00091 * 16 14 13 22 22 C 1.50693 * 109.47182 * 155.00014 * 14 13 12 23 23 C 1.38253 * 119.97511 * 39.72163 * 22 14 13 24 24 C 1.38197 * 120.02640 * 179.76681 * 23 22 14 25 25 C 1.38467 * 119.97276 * 0.51289 * 24 23 22 26 26 F 1.35094 * 120.02309 * 179.76652 * 25 24 23 27 27 C 1.38453 * 119.94738 * 359.74103 * 25 24 23 28 28 C 1.38201 * 119.97736 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 30 30 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 31 31 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 34 34 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 35 35 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 37 37 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 38 38 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 39 39 H 1.07998 * 125.96564 * 180.19235 * 18 17 16 40 40 H 1.08001 * 119.98518 * 0.02562 * 23 22 14 41 41 H 1.07999 * 120.01428 * 180.24940 * 24 23 22 42 42 H 1.08000 * 120.01332 * 179.97438 * 27 25 24 43 43 H 1.08001 * 119.98496 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 3.1472 -2.2863 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 1 3.0239 -1.0904 3.5047 16 6 1.0871 -1.8240 4.0195 17 7 -0.2435 -1.7570 4.0153 18 6 -0.7472 -2.9130 4.3642 19 7 0.2717 -3.7545 4.6113 20 1 0.2059 -4.6805 4.8921 21 7 1.4504 -3.0264 4.3812 22 6 2.0549 0.2987 4.8030 23 6 1.0420 1.2304 4.9344 24 6 1.0688 2.1387 5.9756 25 6 2.1160 2.1222 6.8812 26 9 2.1456 3.0128 7.8967 27 6 3.1325 1.1921 6.7456 28 6 3.1012 0.2816 5.7064 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7079 1.1609 -3.4844 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 0.5438 0.0412 2.4402 39 1 -1.7981 -3.1490 4.4436 40 1 0.2274 1.2457 4.2254 41 1 0.2753 2.8639 6.0803 42 1 3.9501 1.1785 7.4511 43 1 3.8939 -0.4444 5.6007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414174538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:18 Heat of formation + Delta-G solvation = 67.910293 kcal Electronic energy + Delta-G solvation = -26658.128958 eV Core-core repulsion = 22847.560584 eV Total energy + Delta-G solvation = -3810.568374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.86407 -42.15774 -39.21406 -36.97090 -34.70410 -32.28843 -31.72040 -31.08274 -30.82166 -29.78498 -25.93619 -25.52379 -25.17562 -23.65867 -22.89448 -22.60502 -21.94020 -19.94947 -18.51120 -18.35408 -17.63037 -16.31607 -16.24922 -15.60781 -15.59739 -15.47560 -15.15442 -14.86250 -14.48586 -14.14752 -13.81176 -13.45123 -13.18134 -12.92482 -12.71128 -12.20304 -12.18384 -12.05050 -11.90772 -11.65329 -11.13049 -11.03789 -10.86289 -10.65067 -10.55881 -10.19851 -10.14215 -10.05919 -10.03548 -9.73611 -9.37152 -9.09114 -9.02554 -8.60918 -8.50297 -8.27792 -7.92265 -5.89253 -3.99315 1.14985 1.32745 1.58832 2.60571 2.88760 3.31262 3.39725 3.43185 3.61112 4.13457 4.30310 4.36465 4.50195 4.80566 4.81929 4.91854 4.95995 5.17126 5.36372 5.38044 5.39551 5.63048 5.95412 6.04697 6.15395 6.16585 6.29321 6.30676 6.32432 6.43011 6.62305 6.74100 6.90512 6.94653 6.95077 7.10583 7.20894 7.39659 7.46575 7.65944 7.79127 7.84462 7.91763 8.05975 8.23905 8.36912 8.57832 9.01859 9.65467 11.11233 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.003747 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.716777 B = 7471.019825 C = 8714.595059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.120 4.120 4 C -0.505 4.505 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.661 5.661 14 C 0.217 3.783 15 H 0.105 0.895 16 C 0.211 3.789 17 N -0.531 5.531 18 C 0.260 3.740 19 N -0.488 5.488 20 H 0.439 0.561 21 N -0.311 5.311 22 C -0.070 4.070 23 C -0.048 4.048 24 C -0.158 4.158 25 C 0.091 3.909 26 F -0.146 7.146 27 C -0.159 4.159 28 C -0.081 4.081 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.021 0.979 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.354 0.646 39 H 0.221 0.779 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -4.483 18.340 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.544 4.544 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.293 5.293 14 C 0.103 3.897 15 H 0.123 0.877 16 C -0.074 4.074 17 N -0.259 5.259 18 C -0.039 4.039 19 N -0.206 5.206 20 H 0.284 0.716 21 N -0.141 5.141 22 C -0.072 4.072 23 C -0.066 4.066 24 C -0.177 4.177 25 C 0.072 3.928 26 F -0.124 7.124 27 C -0.178 4.178 28 C -0.100 4.100 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.177 0.823 39 H 0.237 0.763 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.331 -3.749 18.156 18.587 hybrid contribution -0.600 -2.018 -0.499 2.164 sum -1.931 -5.767 17.657 18.675 Atomic orbital electron populations 1.21800 0.98327 0.98284 1.00282 1.18089 0.92209 0.93072 0.89688 1.21645 0.97856 0.98052 1.00184 1.21126 1.31044 1.11750 0.90457 0.93045 1.24868 0.95078 0.94947 0.98623 1.69850 1.36848 1.22766 1.22755 0.86623 0.78584 0.79740 0.83513 1.20013 1.21234 1.21081 1.22246 0.98946 0.94547 0.89585 1.60911 1.18158 1.50494 0.99741 1.18862 0.95774 0.85025 0.90040 0.87709 1.25396 0.91368 0.93757 0.96848 1.70278 1.08493 1.23456 1.23665 1.26067 0.96663 0.85872 0.95312 1.48131 1.04486 1.14532 1.53463 0.71611 1.78001 1.05377 1.06229 1.24448 1.19617 0.95093 0.96971 0.95500 1.20894 0.98032 0.92216 0.95473 1.21146 0.98776 1.01839 0.95903 1.17740 0.97089 0.90456 0.87499 1.91470 1.96567 1.66520 1.57884 1.20994 0.99178 0.96887 1.00765 1.20866 0.97910 0.97892 0.93308 0.96938 0.89866 0.96435 0.96214 0.90725 0.95986 0.93273 0.92234 0.96885 0.82348 0.76288 0.84352 0.84882 0.85052 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 7.92 37.16 0.29 -2.76 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 4 C -0.50 -13.57 8.01 -34.44 -0.28 -13.84 16 5 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 8 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.07 1.56 4.38 -3.82 -0.02 1.54 16 13 N -0.66 -11.67 4.90 -109.19 -0.54 -12.21 16 14 C 0.22 3.32 2.73 -70.02 -0.19 3.13 16 15 H 0.10 1.59 7.66 -51.93 -0.40 1.19 16 16 C 0.21 3.20 6.67 -156.85 -1.05 2.15 16 17 N -0.53 -7.51 10.62 -11.97 -0.13 -7.64 16 18 C 0.26 2.62 13.13 -90.65 -1.19 1.43 16 19 N -0.49 -4.92 7.45 29.53 0.22 -4.70 16 20 H 0.44 2.64 8.96 -182.34 -1.63 1.01 16 21 N -0.31 -4.47 12.80 32.42 0.41 -4.05 16 22 C -0.07 -0.97 4.94 -104.62 -0.52 -1.49 16 23 C -0.05 -0.65 9.32 -39.59 -0.37 -1.02 16 24 C -0.16 -1.98 10.03 -39.51 -0.40 -2.38 16 25 C 0.09 1.16 7.30 -39.42 -0.29 0.88 16 26 F -0.15 -1.88 17.27 2.25 0.04 -1.85 16 27 C -0.16 -1.87 10.03 -39.52 -0.40 -2.27 16 28 C -0.08 -1.00 9.67 -39.59 -0.38 -1.38 16 29 H 0.01 0.25 6.57 -51.93 -0.34 -0.09 16 30 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 34 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 37 H 0.01 0.28 8.00 -51.93 -0.42 -0.13 16 38 H 0.35 6.42 5.42 -39.29 -0.21 6.21 16 39 H 0.22 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 1.91 7.24 -52.49 -0.38 1.53 16 41 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.13 1.37 8.04 -52.49 -0.42 0.94 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -31.26 357.36 -10.66 -41.92 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.90 Total: 6.18 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.65 Total: -15.32 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.49 Total: -52.43 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.26 -10.66 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414174538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.833 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds