Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99838 * 2 1 3 5 5 C 1.50703 * 109.47084 * 119.99671 * 2 1 3 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99944 * 180.02562 * 5 2 1 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 2 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38352 * 119.85535 * 269.72790 * 9 8 7 11 11 C 1.37957 * 120.14512 * 179.72611 * 10 9 8 12 12 C 1.39580 * 119.85343 * 0.54518 * 11 10 9 13 13 C 1.47843 * 120.14353 * 179.70877 * 12 11 10 14 14 O 1.21553 * 119.99762 * 180.02562 * 13 12 11 15 15 N 1.34767 * 120.00348 * 0.02562 * 13 12 11 16 16 C 1.46504 * 120.00505 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47685 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99938 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99858 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47391 * 60.00065 * 21 19 17 23 23 H 1.48503 * 109.46905 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47213 * 299.99811 * 21 19 17 25 25 C 1.39577 * 119.70869 * 359.72546 * 12 11 10 26 26 C 1.37959 * 119.85188 * 359.97438 * 25 12 11 27 27 H 1.09001 * 109.47375 * 300.00370 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00388 * 1 2 3 29 29 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47108 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47368 * 299.99783 * 3 2 1 32 32 H 1.09001 * 109.47372 * 59.99628 * 3 2 1 33 33 H 1.09002 * 109.47067 * 299.99853 * 4 2 1 34 34 H 1.08992 * 109.47461 * 60.00154 * 4 2 1 35 35 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 36 36 H 0.97000 * 119.99708 * 359.97438 * 7 5 2 37 37 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 38 38 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 39 39 H 1.08006 * 119.92574 * 359.97438 * 10 9 8 40 40 H 1.08005 * 120.07473 * 180.25144 * 11 10 9 41 41 H 0.97005 * 120.00200 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.46831 * 300.00377 * 16 15 13 43 43 H 1.08993 * 109.46822 * 59.99872 * 16 15 13 44 44 H 0.96999 * 119.99934 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.07314 * 179.97438 * 25 12 11 46 46 H 1.08002 * 119.92451 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5239 2.6401 10 6 6.0415 -2.5657 2.0447 11 6 7.4211 -2.5688 2.0363 12 6 8.1220 -1.5237 2.6403 13 6 9.6004 -1.5238 2.6407 14 8 10.2080 -0.6125 3.1678 15 7 10.2744 -2.5342 2.0567 16 6 11.7394 -2.5346 2.0575 17 6 12.2419 -3.7642 1.3459 18 1 11.5401 -4.4747 0.9343 19 6 13.5975 -3.9823 1.2200 20 7 14.4519 -3.1170 1.7206 21 14 14.2203 -5.5069 0.3384 22 1 13.7256 -5.5059 -1.0618 23 1 15.7053 -5.5072 0.3392 24 1 13.7252 -6.7199 1.0374 25 6 7.4209 -0.4786 3.2441 26 6 6.0413 -0.4846 3.2400 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 3.9877 -0.4644 0.8055 37 1 3.4828 -2.5519 2.6394 38 1 3.4819 -1.0108 3.5301 39 1 5.4980 -3.3762 1.5819 40 1 7.9577 -3.3805 1.5676 41 1 9.7895 -3.2612 1.6356 42 1 12.1033 -1.6443 1.5448 43 1 12.1020 -2.5357 3.0854 44 1 15.4056 -3.2702 1.6318 45 1 7.9572 0.3328 3.7135 46 1 5.4977 0.3232 3.7072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -73.069541 kcal Electronic energy + Delta-G solvation = -25367.540944 eV Core-core repulsion = 21642.026780 eV Total energy + Delta-G solvation = -3725.514164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59128 -39.82272 -38.17415 -36.03034 -35.17799 -34.34717 -32.54131 -31.52936 -31.03244 -27.97215 -27.81079 -27.44440 -26.41646 -23.58094 -22.91800 -22.52594 -21.68017 -19.96647 -19.66748 -18.06955 -17.24285 -16.52012 -16.07392 -16.02332 -15.46604 -15.25328 -14.86400 -14.67963 -14.50009 -14.37211 -14.25554 -14.00458 -13.86150 -13.61109 -12.88271 -12.84767 -12.78638 -12.64521 -12.54444 -12.33296 -12.14545 -12.01467 -11.81323 -11.67897 -11.39869 -11.35148 -11.14942 -11.03938 -10.91554 -10.36763 -10.06028 -9.47465 -9.41335 -9.27420 -9.09801 -8.94482 -8.78395 -7.96527 -6.21040 -4.28604 0.74736 1.26831 2.33906 2.79060 3.22293 3.27291 3.28590 3.28743 3.93717 4.04373 4.20801 4.29024 4.32002 4.39381 4.42177 4.62617 4.79002 4.82755 5.02524 5.10197 5.15077 5.15936 5.25103 5.26780 5.29824 5.35890 5.38503 5.44453 5.49020 5.53440 5.66847 5.72084 5.75926 5.87423 5.88133 6.06173 6.19561 6.32309 6.37685 6.75108 7.16317 7.23740 7.31672 7.44813 7.59554 7.90051 7.91019 8.51377 8.70141 8.96971 9.37806 10.89043 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.002094 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.069498 B =13368.698127 C =13931.090649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.724 5.724 8 C 0.161 3.839 9 C -0.101 4.101 10 C -0.108 4.108 11 C -0.090 4.090 12 C -0.109 4.109 13 C 0.535 3.465 14 O -0.550 6.550 15 N -0.703 5.703 16 C 0.249 3.751 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.067 4.067 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.390 0.610 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.267 0.733 45 H 0.138 0.862 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.208 5.503 -4.486 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.308 3.692 6 O -0.417 6.417 7 N -0.376 5.376 8 C 0.038 3.962 9 C -0.101 4.101 10 C -0.126 4.126 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.321 3.679 14 O -0.430 6.430 15 N -0.351 5.351 16 C 0.128 3.872 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.086 4.086 26 C -0.128 4.128 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.224 0.776 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.156 0.844 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.078 5.826 -3.502 26.949 hybrid contribution 0.672 -1.054 -0.927 1.556 sum -25.406 4.772 -4.429 26.227 Atomic orbital electron populations 1.21663 0.91873 1.02882 1.02089 1.20833 0.98120 0.96492 0.93575 1.21883 1.01354 0.93661 1.03025 1.21883 1.01362 1.00665 0.96019 1.20630 0.81957 0.79296 0.87278 1.90700 1.55336 1.48552 1.47093 1.46122 1.07168 1.58897 1.25440 1.20209 0.89300 0.98297 0.88366 1.19944 0.94506 0.95762 0.99934 1.20984 0.93911 0.98272 0.99439 1.21426 0.94229 0.97631 0.97596 1.20408 0.94357 0.96202 1.00268 1.18274 0.86429 0.83275 0.79957 1.90737 1.69747 1.36341 1.46219 1.46450 1.10563 1.22940 1.55138 1.19170 0.72423 0.97698 0.97891 1.21160 0.92220 1.07012 1.38020 0.91933 1.24952 0.96556 0.97047 0.95428 1.69960 1.02598 1.35420 1.44161 0.86456 0.77780 0.82579 0.79987 1.20039 1.21031 1.20035 1.21317 0.93524 0.97570 0.96164 1.21027 0.93916 0.98137 0.99704 0.91933 0.91966 0.91917 0.91996 0.91204 0.91980 0.91957 0.91208 0.91986 0.76241 0.90465 0.90478 0.85445 0.85051 0.77581 0.95254 0.95252 0.92319 0.84438 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 7.76 37.16 0.29 -0.59 16 2 C -0.09 -0.58 0.87 -155.66 -0.14 -0.72 16 3 C -0.14 -0.75 8.37 37.16 0.31 -0.44 16 4 C -0.14 -0.76 8.37 37.16 0.31 -0.45 16 5 C 0.52 4.91 6.48 -10.98 -0.07 4.83 16 6 O -0.54 -7.14 15.98 5.56 0.09 -7.05 16 7 N -0.72 -5.70 5.33 -61.47 -0.33 -6.03 16 8 C 0.16 1.39 5.79 -5.19 -0.03 1.36 16 9 C -0.10 -0.95 5.25 -104.53 -0.55 -1.50 16 10 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16 11 C -0.09 -1.09 9.54 -39.18 -0.37 -1.47 16 12 C -0.11 -1.65 5.87 -104.97 -0.62 -2.27 16 13 C 0.54 10.78 7.77 -12.33 -0.10 10.69 16 14 O -0.55 -13.20 16.35 5.32 0.09 -13.12 16 15 N -0.70 -14.66 5.50 -62.44 -0.34 -15.00 16 16 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 17 C -0.55 -14.55 9.28 -34.44 -0.32 -14.87 16 18 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.70 13.29 55.43 0.74 -24.96 16 21 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 C -0.07 -0.89 9.60 -39.18 -0.38 -1.26 16 26 C -0.11 -1.12 9.68 -39.64 -0.38 -1.50 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.30 7.57 -51.93 -0.39 -0.10 16 36 H 0.40 2.56 7.30 -40.82 -0.30 2.27 16 37 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 40 H 0.13 1.45 6.41 -52.48 -0.34 1.11 16 41 H 0.39 6.89 6.36 -40.82 -0.26 6.63 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -33.53 386.73 -8.60 -42.13 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.10 Total: 4.20 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.55 Total: -1.49 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.07 Total: -45.99 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.18 Total: -20.17 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.53 -8.60 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.938 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds