Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99838 * 2 1 3 5 5 C 1.50703 * 109.47084 * 119.99671 * 2 1 3 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99944 * 180.02562 * 5 2 1 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 2 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38352 * 119.85535 * 269.72790 * 9 8 7 11 11 C 1.37957 * 120.14512 * 179.72611 * 10 9 8 12 12 C 1.39580 * 119.85343 * 0.54518 * 11 10 9 13 13 C 1.47843 * 120.14353 * 179.70877 * 12 11 10 14 14 O 1.21553 * 119.99762 * 180.02562 * 13 12 11 15 15 N 1.34767 * 120.00348 * 0.02562 * 13 12 11 16 16 C 1.46504 * 120.00505 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47685 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99938 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00127 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99858 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47391 * 60.00065 * 21 19 17 23 23 H 1.48503 * 109.46905 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47213 * 299.99811 * 21 19 17 25 25 C 1.39577 * 119.70869 * 359.72546 * 12 11 10 26 26 C 1.37959 * 119.85188 * 359.97438 * 25 12 11 27 27 H 1.09001 * 109.47375 * 300.00370 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00388 * 1 2 3 29 29 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47108 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47368 * 299.99783 * 3 2 1 32 32 H 1.09001 * 109.47372 * 59.99628 * 3 2 1 33 33 H 1.09002 * 109.47067 * 299.99853 * 4 2 1 34 34 H 1.08992 * 109.47461 * 60.00154 * 4 2 1 35 35 H 1.09004 * 109.46930 * 179.97438 * 4 2 1 36 36 H 0.97000 * 119.99708 * 359.97438 * 7 5 2 37 37 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 38 38 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 39 39 H 1.08006 * 119.92574 * 359.97438 * 10 9 8 40 40 H 1.08005 * 120.07473 * 180.25144 * 11 10 9 41 41 H 0.97005 * 120.00200 * 0.02562 * 15 13 12 42 42 H 1.09000 * 109.46831 * 300.00377 * 16 15 13 43 43 H 1.08993 * 109.46822 * 59.99872 * 16 15 13 44 44 H 0.96999 * 119.99934 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.07314 * 179.97438 * 25 12 11 46 46 H 1.08002 * 119.92451 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3527 -1.5239 2.6401 10 6 6.0415 -2.5657 2.0447 11 6 7.4211 -2.5688 2.0363 12 6 8.1220 -1.5237 2.6403 13 6 9.6004 -1.5238 2.6407 14 8 10.2080 -0.6125 3.1678 15 7 10.2744 -2.5342 2.0567 16 6 11.7394 -2.5346 2.0575 17 6 12.2419 -3.7642 1.3459 18 1 11.5401 -4.4747 0.9343 19 6 13.5975 -3.9823 1.2200 20 7 14.4519 -3.1170 1.7206 21 14 14.2203 -5.5069 0.3384 22 1 13.7256 -5.5059 -1.0618 23 1 15.7053 -5.5072 0.3392 24 1 13.7252 -6.7199 1.0374 25 6 7.4209 -0.4786 3.2441 26 6 6.0413 -0.4846 3.2400 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 3.9877 -0.4644 0.8055 37 1 3.4828 -2.5519 2.6394 38 1 3.4819 -1.0108 3.5301 39 1 5.4980 -3.3762 1.5819 40 1 7.9577 -3.3805 1.5676 41 1 9.7895 -3.2612 1.6356 42 1 12.1033 -1.6443 1.5448 43 1 12.1020 -2.5357 3.0854 44 1 15.4056 -3.2702 1.6318 45 1 7.9572 0.3328 3.7135 46 1 5.4977 0.3232 3.7072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427626364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -95.851755 kcal Electronic energy + Delta-G solvation = -25368.528855 eV Core-core repulsion = 21642.026780 eV Total energy + Delta-G solvation = -3726.502075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40961 -40.99038 -39.49359 -36.61961 -36.25908 -36.02110 -34.45899 -32.57282 -32.00352 -29.55355 -28.20734 -28.20000 -27.47360 -25.06884 -23.98032 -23.50736 -22.84674 -21.35615 -20.42798 -19.56275 -18.09949 -17.76708 -17.31937 -17.20745 -16.59996 -16.33511 -16.21069 -16.11226 -15.71489 -15.47669 -15.01203 -14.73793 -14.66734 -14.51410 -14.32232 -14.14665 -13.94543 -13.52798 -13.42406 -13.27723 -13.03852 -12.95602 -12.89731 -12.68672 -12.61108 -12.60225 -12.24434 -12.06439 -11.88114 -11.82773 -11.53465 -10.97309 -10.81648 -10.80592 -10.13833 -10.08326 -9.99606 -9.75818 -8.30163 -6.47349 -0.29467 0.36254 1.43321 1.47424 1.55607 1.63534 1.75135 2.28080 2.31574 2.50181 2.88411 3.04869 3.50595 3.65904 3.76200 3.84574 3.88626 3.95115 3.98127 4.25207 4.28754 4.35620 4.62222 4.65095 4.73366 4.74172 4.79860 4.84936 4.96923 4.97381 5.00995 5.03477 5.06324 5.19919 5.23673 5.24349 5.34531 5.35332 5.37179 5.40690 5.42261 5.46038 5.64218 5.81394 5.84028 6.51568 6.61592 6.80724 7.19982 7.22119 7.37004 8.81778 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.002094 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.069498 B =13368.698127 C =13931.090649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.520 3.480 6 O -0.583 6.583 7 N -0.714 5.714 8 C 0.164 3.836 9 C -0.079 4.079 10 C -0.097 4.097 11 C -0.085 4.085 12 C -0.135 4.135 13 C 0.533 3.467 14 O -0.600 6.600 15 N -0.698 5.698 16 C 0.265 3.735 17 C -0.558 4.558 18 H 0.085 0.915 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.075 4.075 26 C -0.099 4.099 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.408 0.592 42 H -0.009 1.009 43 H -0.010 1.010 44 H 0.269 0.731 45 H 0.123 0.877 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.519 4.085 -6.428 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.307 3.693 6 O -0.463 6.463 7 N -0.366 5.366 8 C 0.041 3.959 9 C -0.080 4.080 10 C -0.115 4.115 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.322 3.678 14 O -0.483 6.483 15 N -0.348 5.348 16 C 0.142 3.858 17 C -0.595 4.595 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.095 4.095 26 C -0.118 4.118 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.245 0.755 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.078 0.922 45 H 0.141 0.859 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -28.421 4.399 -5.471 29.275 hybrid contribution 1.258 -0.538 -0.277 1.396 sum -27.162 3.860 -5.748 28.031 Atomic orbital electron populations 1.21669 0.92283 1.02104 1.02433 1.20865 0.97815 0.97202 0.92847 1.21894 1.01861 0.92556 1.03426 1.21892 1.01895 1.00188 0.95739 1.21140 0.81885 0.78684 0.87557 1.90685 1.56402 1.50485 1.48710 1.46028 1.07025 1.58316 1.25272 1.20165 0.88266 0.98706 0.88770 1.20062 0.94931 0.94876 0.98091 1.21258 0.92813 0.98906 0.98526 1.21526 0.95255 0.96741 0.96877 1.20009 0.90784 0.98952 1.04079 1.19093 0.88757 0.81815 0.78131 1.90697 1.71457 1.38052 1.48141 1.46143 1.08517 1.24185 1.55941 1.18615 0.75575 0.96525 0.95054 1.21559 0.93020 1.07162 1.37807 0.89665 1.26083 0.96810 1.00644 0.96081 1.70129 1.03030 1.37898 1.45742 0.85187 0.76809 0.78034 0.79079 1.18502 1.21159 1.18648 1.21299 0.94826 0.96905 0.96426 1.21194 0.92433 0.98998 0.99127 0.93322 0.89861 0.93265 0.91172 0.89634 0.92820 0.92733 0.89672 0.91115 0.75065 0.90114 0.90438 0.82424 0.83996 0.75499 0.99120 0.99240 0.92198 0.85854 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 7.76 71.98 0.56 -1.03 16 2 C -0.08 -0.94 0.87 -52.93 -0.05 -0.99 16 3 C -0.14 -1.12 8.37 71.98 0.60 -0.52 16 4 C -0.14 -1.10 8.37 71.98 0.60 -0.49 16 5 C 0.52 8.77 6.48 87.66 0.57 9.34 16 6 O -0.58 -14.85 15.98 -3.02 -0.05 -14.90 16 7 N -0.71 -9.18 5.33 -466.78 -2.49 -11.67 16 8 C 0.16 2.30 5.79 85.63 0.50 2.80 16 9 C -0.08 -1.22 5.25 -19.81 -0.10 -1.32 16 10 C -0.10 -1.55 9.68 22.23 0.22 -1.34 16 11 C -0.09 -1.89 9.54 22.53 0.21 -1.67 16 12 C -0.13 -4.06 5.87 -20.09 -0.12 -4.17 16 13 C 0.53 22.40 7.77 86.79 0.67 23.08 16 14 O -0.60 -30.74 16.35 -3.88 -0.06 -30.80 16 15 N -0.70 -30.03 5.50 -469.73 -2.58 -32.62 16 16 C 0.26 14.60 5.43 85.63 0.46 15.06 16 17 C -0.56 -30.05 9.28 25.60 0.24 -29.82 16 18 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 19 C 0.00 0.20 5.46 84.66 0.46 0.66 16 20 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 21 Si 0.99 41.69 29.54 68.60 2.03 43.72 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.08 -1.97 9.60 22.53 0.22 -1.75 16 26 C -0.10 -1.79 9.68 22.23 0.22 -1.58 16 27 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.07 0.45 7.56 -2.38 -0.02 0.43 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.44 7.57 -2.38 -0.02 0.42 16 36 H 0.41 3.81 7.30 -92.71 -0.68 3.13 16 37 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.14 2.78 6.41 -2.91 -0.02 2.76 16 41 H 0.41 14.28 6.36 -92.70 -0.59 13.69 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.12 3.52 7.65 -2.91 -0.02 3.50 16 46 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.41 386.73 2.11 -75.30 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.27 Total: 20.16 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.26 Total: 6.27 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.79 Total: -99.74 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.11 Total: -45.70 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.41 2.11 -75.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.555 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds