Wall clock time and date at job start Tue Mar 31 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47062 * 2 1 4 4 C 1.53006 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46444 * 305.00022 * 4 3 2 6 6 N 1.46492 * 109.47106 * 64.99667 * 4 3 2 7 7 C 1.34774 * 120.00345 * 275.00475 * 6 4 3 8 8 O 1.21286 * 119.99717 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00373 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47148 * 179.97438 * 9 7 6 11 11 C 1.38235 * 119.99808 * 89.99755 * 10 9 7 12 12 C 1.38243 * 119.99602 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.00069 * 0.09581 * 12 11 10 14 14 C 1.38234 * 119.99866 * 359.86117 * 13 12 11 15 15 C 1.38230 * 119.99865 * 269.97500 * 10 9 7 16 16 C 1.50694 * 109.46929 * 184.99929 * 4 3 2 17 17 O 1.21281 * 120.00128 * 239.99466 * 16 4 3 18 18 N 1.34775 * 120.00443 * 60.00226 * 16 4 3 19 19 C 1.46501 * 120.00331 * 179.97438 * 18 16 4 20 20 C 1.50699 * 109.47024 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00293 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00060 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99867 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00281 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47070 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47151 * 120.00304 * 24 22 20 27 27 H 1.48505 * 109.46964 * 240.00198 * 24 22 20 28 28 H 1.08998 * 109.47635 * 300.00460 * 1 2 3 29 29 H 1.08997 * 109.47187 * 60.00426 * 1 2 3 30 30 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47417 * 240.00005 * 2 1 3 32 32 H 1.08997 * 109.47187 * 119.99574 * 2 1 3 33 33 H 1.09000 * 109.47677 * 59.99654 * 3 2 1 34 34 H 1.09003 * 109.47449 * 299.99925 * 3 2 1 35 35 H 0.97000 * 119.99885 * 95.00081 * 6 4 3 36 36 H 1.08993 * 109.47576 * 59.99137 * 9 7 6 37 37 H 1.09001 * 109.46592 * 299.99075 * 9 7 6 38 38 H 1.08000 * 120.00616 * 359.70324 * 11 10 9 39 39 H 1.08001 * 119.99556 * 179.97438 * 12 11 10 40 40 H 1.07997 * 119.99666 * 179.97438 * 13 12 11 41 41 H 1.08000 * 119.99729 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.00371 * 0.02562 * 15 10 9 43 43 H 0.97003 * 119.99728 * 359.97438 * 18 16 4 44 44 H 1.09005 * 109.46779 * 299.99344 * 19 18 16 45 45 H 1.08989 * 109.47107 * 59.99588 * 19 18 16 46 46 H 0.97006 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8427 6 7 4.0589 0.8586 -1.2508 7 6 4.1876 -0.4780 -1.3657 8 8 3.8992 -1.1974 -0.4328 9 6 4.6911 -1.0787 -2.6529 10 6 4.7421 -2.5791 -2.5209 11 6 3.6414 -3.3411 -2.8654 12 6 3.6885 -4.7174 -2.7448 13 6 4.8355 -5.3315 -2.2778 14 6 5.9365 -4.5695 -1.9341 15 6 5.8898 -3.1933 -2.0557 16 6 4.0722 2.8580 0.1245 17 8 4.7699 3.3323 -0.7468 18 7 3.7462 3.5968 1.2035 19 6 4.2348 4.9726 1.3241 20 6 3.7314 5.5735 2.6111 21 1 3.1092 4.9892 3.2729 22 6 4.0649 6.8692 2.9439 23 7 4.8221 7.5810 2.1378 24 14 3.4415 7.6138 4.5396 25 1 2.6158 6.6139 5.2630 26 1 4.5960 8.0076 5.3864 27 1 2.6174 8.8119 4.2380 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 4.2899 1.4340 -1.9967 36 1 5.6904 -0.6987 -2.8648 37 1 4.0191 -0.8080 -3.4673 38 1 2.7432 -2.8609 -3.2247 39 1 2.8284 -5.3127 -3.0137 40 1 4.8721 -6.4067 -2.1832 41 1 6.8327 -5.0493 -1.5696 42 1 6.7497 -2.5979 -1.7864 43 1 3.1879 3.2175 1.9003 44 1 5.3249 4.9722 1.3249 45 1 3.8723 5.5620 0.4821 46 1 5.0565 8.4928 2.3717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427652901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:11 Heat of formation + Delta-G solvation = -70.847161 kcal Electronic energy + Delta-G solvation = -26131.526991 eV Core-core repulsion = 22406.109197 eV Total energy + Delta-G solvation = -3725.417795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46799 -39.35705 -38.41740 -35.59175 -34.42866 -33.50069 -32.89966 -32.40608 -31.04310 -29.79813 -27.65645 -26.99103 -24.62763 -22.74471 -22.63680 -21.80472 -21.03925 -20.27351 -19.76451 -17.86355 -17.01269 -16.75558 -16.28466 -15.93875 -15.43476 -15.31056 -15.18710 -14.87183 -14.55705 -14.30278 -14.14360 -13.59395 -13.51470 -13.30179 -13.22425 -12.95938 -12.63022 -12.58058 -12.12926 -12.04962 -11.92060 -11.60455 -11.41594 -11.29780 -11.16958 -11.03394 -10.98261 -10.94225 -10.53168 -10.35777 -9.88828 -9.44302 -9.33389 -9.05430 -8.91040 -8.85967 -8.80372 -8.00725 -6.21767 -4.28851 1.16967 1.26918 2.62312 3.05805 3.16351 3.20915 3.28451 3.31460 3.69238 3.99846 4.31685 4.45785 4.64420 4.83505 4.85872 4.92931 4.94127 5.03155 5.07106 5.12564 5.14866 5.27321 5.35287 5.39621 5.40539 5.47695 5.62575 5.70616 5.83475 5.87895 5.90767 5.94349 6.11368 6.25427 6.28773 6.35216 6.42781 6.44580 6.48574 6.84139 7.20632 7.28330 7.43162 7.54740 7.59124 7.90094 8.22832 8.49426 8.68127 8.93535 9.37766 10.88375 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.002439 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.182871 B =11476.255689 C =12082.067864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.126 3.874 5 H 0.109 0.891 6 N -0.709 5.709 7 C 0.516 3.484 8 O -0.529 6.529 9 C -0.104 4.104 10 C -0.062 4.062 11 C -0.105 4.105 12 C -0.121 4.121 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.105 4.105 16 C 0.496 3.504 17 O -0.554 6.554 18 N -0.703 5.703 19 C 0.249 3.751 20 C -0.544 4.544 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.393 0.607 44 H 0.028 0.972 45 H 0.029 0.971 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -22.121 -10.158 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.164 4.164 4 C 0.017 3.983 5 H 0.127 0.873 6 N -0.362 5.362 7 C 0.302 3.698 8 O -0.406 6.406 9 C -0.144 4.144 10 C -0.062 4.062 11 C -0.123 4.123 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.138 4.138 15 C -0.123 4.123 16 C 0.279 3.721 17 O -0.434 6.434 18 N -0.351 5.351 19 C 0.129 3.871 20 C -0.582 4.582 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.246 0.754 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.226 0.774 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.256 -22.057 -10.103 24.478 hybrid contribution -0.399 0.735 0.885 1.218 sum -3.655 -21.322 -9.218 23.515 Atomic orbital electron populations 1.21800 0.96394 1.01206 1.01575 1.21564 0.94843 0.95590 1.03205 1.22010 0.92762 0.98315 1.03350 1.20903 0.95042 0.93191 0.89116 0.87295 1.45743 1.67091 1.06895 1.16490 1.20402 0.77782 0.81909 0.89708 1.90732 1.49233 1.60300 1.40309 1.20687 1.04281 0.92772 0.96678 1.19271 0.94322 0.93504 0.99106 1.20972 0.97512 0.93918 0.99897 1.21085 0.98067 0.94658 1.00046 1.21125 0.93624 0.99732 0.99622 1.21098 0.98615 0.93899 1.00172 1.21009 0.97768 0.94830 0.98660 1.20386 0.81383 0.87076 0.83205 1.90649 1.39105 1.72838 1.40789 1.46442 1.51206 1.16628 1.20858 1.19160 0.95386 0.75227 0.97331 1.21246 1.33164 0.98657 1.05121 0.91755 1.24953 0.94798 0.96797 0.97469 1.69983 1.35623 1.10028 1.36611 0.86350 0.78655 0.79158 0.82703 1.19581 1.20771 1.20770 0.92767 0.93139 0.93053 0.91806 0.91332 0.90292 0.91251 0.75394 0.87744 0.87897 0.86296 0.86217 0.86322 0.86170 0.86195 0.77386 0.95398 0.95339 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.11 -1.39 4.54 -26.73 -0.12 -1.51 16 3 C -0.13 -1.60 4.83 -26.73 -0.13 -1.73 16 4 C 0.13 1.84 2.67 -69.09 -0.18 1.65 16 5 H 0.11 1.63 7.58 -51.93 -0.39 1.24 16 6 N -0.71 -9.17 4.90 -54.94 -0.27 -9.44 16 7 C 0.52 6.41 6.39 -10.99 -0.07 6.34 16 8 O -0.53 -8.08 13.17 5.55 0.07 -8.01 16 9 C -0.10 -0.96 5.83 -29.03 -0.17 -1.13 16 10 C -0.06 -0.64 4.37 -104.63 -0.46 -1.10 16 11 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 12 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 13 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 14 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 15 C -0.10 -1.08 9.70 -39.59 -0.38 -1.46 16 16 C 0.50 9.34 7.22 -10.99 -0.08 9.26 16 17 O -0.55 -12.25 15.84 5.56 0.09 -12.16 16 18 N -0.70 -14.19 5.41 -61.48 -0.33 -14.52 16 19 C 0.25 6.40 5.43 -5.19 -0.03 6.37 16 20 C -0.54 -14.42 9.28 -34.44 -0.32 -14.73 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 24 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.82 5.65 -51.93 -0.29 0.53 16 32 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.41 5.06 7.79 -40.82 -0.32 4.74 16 36 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.39 6.87 7.68 -40.82 -0.31 6.56 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.81 8.14 -51.94 -0.42 0.38 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -32.53 384.12 -9.32 -41.85 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.14 Total: 9.38 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.25 Total: -3.57 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.13 Total: -48.84 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.16 Total: -20.17 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.53 -9.32 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427652901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.992 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds