Wall clock time and date at job start Tue Mar 31 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.52994 * 109.47515 * 239.99958 * 2 1 3 5 5 C 1.53004 * 109.46715 * 119.99604 * 2 1 3 6 6 N 1.46490 * 109.47079 * 60.00561 * 5 2 1 7 7 C 1.34777 * 120.00008 * 180.02562 * 6 5 2 8 8 O 1.21523 * 120.00358 * 359.97438 * 7 6 5 9 9 C 1.48040 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.39562 * 119.99779 * 180.02562 * 9 7 6 11 11 C 1.37813 * 119.99751 * 180.29987 * 10 9 7 12 12 C 1.39559 * 120.00092 * 359.48410 * 11 10 9 13 13 C 1.48033 * 119.99870 * 180.23735 * 12 11 10 14 14 O 1.21533 * 119.99890 * 180.25438 * 13 12 11 15 15 N 1.34776 * 120.00162 * 0.25224 * 13 12 11 16 16 C 1.46503 * 119.99838 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46908 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99759 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99831 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47395 * 119.99575 * 21 19 17 24 24 H 1.48492 * 109.46940 * 239.99791 * 21 19 17 25 25 C 1.39553 * 120.00198 * 0.48752 * 12 11 10 26 26 C 1.37826 * 119.99752 * 359.77167 * 25 12 11 27 27 H 1.09001 * 109.47300 * 300.00702 * 1 2 3 28 28 H 1.09001 * 109.47144 * 59.99860 * 1 2 3 29 29 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47216 * 299.99541 * 3 2 1 32 32 H 1.09000 * 109.47118 * 59.99715 * 3 2 1 33 33 H 1.09007 * 109.46949 * 299.99889 * 4 2 1 34 34 H 1.09000 * 109.47597 * 59.99558 * 4 2 1 35 35 H 1.09003 * 109.47500 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47136 * 299.99602 * 5 2 1 37 37 H 1.09004 * 109.46598 * 180.02562 * 5 2 1 38 38 H 0.97001 * 120.00282 * 359.97438 * 6 5 2 39 39 H 1.08002 * 119.99777 * 0.02562 * 10 9 7 40 40 H 1.07998 * 120.00138 * 179.72071 * 11 10 9 41 41 H 0.97000 * 119.99763 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.46987 * 300.00070 * 16 15 13 43 43 H 1.09002 * 109.47020 * 60.00137 * 16 15 13 44 44 H 0.96999 * 119.99588 * 180.02562 * 20 19 17 45 45 H 1.07991 * 120.00553 * 179.74577 * 25 12 11 46 46 H 1.07997 * 119.99782 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2494 6 7 1.5516 -2.1023 1.2493 7 6 1.8767 -2.9320 2.2605 8 8 2.5753 -2.5346 3.1720 9 6 1.3828 -4.3276 2.2607 10 6 1.7190 -5.1866 3.3080 11 6 1.2644 -6.4875 3.3051 12 6 0.4589 -6.9429 2.2604 13 6 -0.0338 -8.3388 2.2600 14 8 -0.7315 -8.7367 1.3479 15 7 0.2913 -9.1685 3.2712 16 6 -0.1959 -10.5502 3.2704 17 6 0.3061 -11.2604 4.5011 18 1 0.9264 -10.7354 5.2124 19 6 -0.0256 -12.5810 4.7184 20 7 -0.7805 -13.2206 3.8520 21 14 0.5961 -13.4612 6.2443 22 1 1.4192 -12.5272 7.0537 23 1 -0.5594 -13.9295 7.0510 24 1 1.4231 -14.6267 5.8410 25 6 0.1222 -6.0839 1.2134 26 6 0.5813 -4.7843 1.2136 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2489 36 1 1.6766 -0.2073 2.1392 37 1 3.1299 -0.7208 1.2496 38 1 0.9937 -2.4196 0.5220 39 1 2.3392 -4.8330 4.1185 40 1 1.5282 -7.1536 4.1133 41 1 0.8484 -8.8510 3.9990 42 1 -1.2859 -10.5511 3.2691 43 1 0.1690 -11.0636 2.3808 44 1 -1.0141 -14.1495 4.0051 45 1 -0.4977 -6.4374 0.4029 46 1 0.3211 -4.1196 0.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427653481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:31 Heat of formation + Delta-G solvation = -69.185418 kcal Electronic energy + Delta-G solvation = -25364.908181 eV Core-core repulsion = 21639.562445 eV Total energy + Delta-G solvation = -3725.345736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59815 -39.49097 -38.18658 -37.40763 -34.36988 -34.02244 -32.54292 -31.38629 -31.01709 -27.84864 -27.77654 -27.65564 -26.66315 -24.42540 -22.92115 -22.17131 -21.02566 -19.87265 -19.62862 -18.39035 -17.62472 -16.51429 -15.97684 -15.78009 -15.46577 -15.32798 -14.87441 -14.72454 -14.50211 -14.46007 -14.37429 -14.02170 -13.82778 -13.65571 -13.31992 -13.01148 -12.66315 -12.62049 -12.42754 -12.27612 -12.18645 -12.02922 -11.79006 -11.39722 -11.30303 -11.24086 -11.14512 -10.98844 -10.94282 -10.36092 -10.20778 -9.45263 -9.43884 -9.30274 -9.16936 -9.02728 -8.78991 -7.97651 -6.20624 -4.27862 0.43981 1.23258 2.48884 2.82866 3.21940 3.29237 3.32179 3.35885 3.88652 4.02142 4.12239 4.26809 4.31958 4.33731 4.46056 4.58174 4.80625 4.85765 5.03053 5.09403 5.11256 5.15937 5.21244 5.26090 5.27602 5.29925 5.36509 5.41099 5.44413 5.54593 5.56625 5.67706 5.79813 5.82082 5.87276 6.04200 6.10114 6.16296 6.29714 6.65604 7.15638 7.23134 7.30312 7.44695 7.60392 7.91120 7.92049 8.50133 8.69993 8.95216 9.38687 10.89552 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002015 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.213007 B =13892.564498 C =14546.110878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.145 4.145 5 C 0.129 3.871 6 N -0.726 5.726 7 C 0.560 3.440 8 O -0.536 6.536 9 C -0.126 4.126 10 C -0.065 4.065 11 C -0.096 4.096 12 C -0.091 4.091 13 C 0.534 3.466 14 O -0.548 6.548 15 N -0.701 5.701 16 C 0.248 3.752 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.073 4.073 26 C -0.096 4.096 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.391 0.609 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.266 0.734 45 H 0.143 0.857 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 27.813 -8.111 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.202 4.202 5 C 0.006 3.994 6 N -0.379 5.379 7 C 0.348 3.652 8 O -0.413 6.413 9 C -0.130 4.130 10 C -0.084 4.084 11 C -0.115 4.115 12 C -0.095 4.095 13 C 0.319 3.681 14 O -0.428 6.428 15 N -0.349 5.349 16 C 0.127 3.873 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.092 4.092 26 C -0.115 4.115 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.225 0.775 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.160 0.840 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.772 27.595 -8.126 29.160 hybrid contribution 0.250 -0.619 0.766 1.016 sum 5.022 26.976 -7.360 28.409 Atomic orbital electron populations 1.21912 0.93892 1.02033 1.02364 1.20833 0.96383 0.96248 0.94871 1.21807 1.01333 0.94258 1.02330 1.21913 1.01482 1.00101 0.96702 1.21438 0.99310 0.80955 0.97708 1.45970 1.54129 1.12389 1.25456 1.18360 0.79892 0.85239 0.81723 1.90766 1.37754 1.77062 1.35756 1.19986 1.01723 0.93786 0.97461 1.21182 0.97580 0.92344 0.97311 1.21432 0.96274 0.95781 0.98014 1.20555 0.98069 0.95198 0.95639 1.18287 0.81563 0.84830 0.83392 1.90736 1.38826 1.76989 1.36227 1.46469 1.51067 1.14574 1.22791 1.19202 0.95533 0.74744 0.97795 1.21245 1.33383 0.96798 1.06892 0.91754 1.24952 0.94787 0.97189 0.97055 1.69982 1.35647 1.11189 1.35351 0.86342 0.78637 0.79562 0.82277 1.19584 1.20761 1.20769 1.21227 0.97947 0.92163 0.97898 1.21169 0.96978 0.95967 0.97378 0.92202 0.92108 0.92590 0.92230 0.92006 0.92227 0.92594 0.92108 0.92199 0.91229 0.91226 0.76281 0.84169 0.84466 0.77457 0.95159 0.95169 0.92438 0.83957 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.30 37.16 0.31 -0.38 16 2 C -0.08 -0.42 0.78 -154.51 -0.12 -0.54 16 3 C -0.14 -0.60 8.47 37.16 0.31 -0.29 16 4 C -0.14 -0.69 8.30 37.15 0.31 -0.38 16 5 C 0.13 0.94 4.56 -4.04 -0.02 0.92 16 6 N -0.73 -5.94 4.91 -61.19 -0.30 -6.24 16 7 C 0.56 6.49 7.78 -12.24 -0.10 6.40 16 8 O -0.54 -7.97 16.33 5.35 0.09 -7.88 16 9 C -0.13 -1.46 5.88 -104.89 -0.62 -2.07 16 10 C -0.07 -0.80 9.58 -39.24 -0.38 -1.17 16 11 C -0.10 -1.26 9.53 -39.24 -0.37 -1.63 16 12 C -0.09 -1.40 5.88 -104.90 -0.62 -2.01 16 13 C 0.53 10.71 7.78 -12.24 -0.10 10.61 16 14 O -0.55 -12.95 16.34 5.34 0.09 -12.87 16 15 N -0.70 -14.63 5.50 -62.37 -0.34 -14.98 16 16 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 17 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.07 -0.96 9.58 -39.24 -0.38 -1.34 16 26 C -0.10 -0.99 9.53 -39.24 -0.37 -1.37 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.26 6.86 -51.93 -0.36 -0.09 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.26 6.86 -51.93 -0.36 -0.09 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 2.45 4.19 -40.82 -0.17 2.28 16 39 H 0.14 1.61 7.64 -52.49 -0.40 1.21 16 40 H 0.14 1.60 6.39 -52.49 -0.34 1.26 16 41 H 0.39 6.96 6.34 -40.82 -0.26 6.70 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.14 1.84 7.64 -52.49 -0.40 1.44 16 46 H 0.13 0.85 6.39 -52.49 -0.34 0.52 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -33.45 381.10 -8.38 -41.83 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.80 Total: 3.80 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.58 Total: -0.05 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.09 Total: -46.23 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.45 -8.38 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427653481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.355 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds