Wall clock time and date at job start Tue Mar 31 2020 11:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.52994 * 109.47515 * 239.99958 * 2 1 3 5 5 C 1.53004 * 109.46715 * 119.99604 * 2 1 3 6 6 N 1.46490 * 109.47079 * 60.00561 * 5 2 1 7 7 C 1.34777 * 120.00008 * 180.02562 * 6 5 2 8 8 O 1.21523 * 120.00358 * 359.97438 * 7 6 5 9 9 C 1.48040 * 119.99844 * 179.97438 * 7 6 5 10 10 C 1.39562 * 119.99779 * 180.02562 * 9 7 6 11 11 C 1.37813 * 119.99751 * 180.29987 * 10 9 7 12 12 C 1.39559 * 120.00092 * 359.48410 * 11 10 9 13 13 C 1.48033 * 119.99870 * 180.23735 * 12 11 10 14 14 O 1.21533 * 119.99890 * 180.25438 * 13 12 11 15 15 N 1.34776 * 120.00162 * 0.25224 * 13 12 11 16 16 C 1.46503 * 119.99838 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46908 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99759 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99831 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47395 * 119.99575 * 21 19 17 24 24 H 1.48492 * 109.46940 * 239.99791 * 21 19 17 25 25 C 1.39553 * 120.00198 * 0.48752 * 12 11 10 26 26 C 1.37826 * 119.99752 * 359.77167 * 25 12 11 27 27 H 1.09001 * 109.47300 * 300.00702 * 1 2 3 28 28 H 1.09001 * 109.47144 * 59.99860 * 1 2 3 29 29 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47216 * 299.99541 * 3 2 1 32 32 H 1.09000 * 109.47118 * 59.99715 * 3 2 1 33 33 H 1.09007 * 109.46949 * 299.99889 * 4 2 1 34 34 H 1.09000 * 109.47597 * 59.99558 * 4 2 1 35 35 H 1.09003 * 109.47500 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47136 * 299.99602 * 5 2 1 37 37 H 1.09004 * 109.46598 * 180.02562 * 5 2 1 38 38 H 0.97001 * 120.00282 * 359.97438 * 6 5 2 39 39 H 1.08002 * 119.99777 * 0.02562 * 10 9 7 40 40 H 1.07998 * 120.00138 * 179.72071 * 11 10 9 41 41 H 0.97000 * 119.99763 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.46987 * 300.00070 * 16 15 13 43 43 H 1.09002 * 109.47020 * 60.00137 * 16 15 13 44 44 H 0.96999 * 119.99588 * 180.02562 * 20 19 17 45 45 H 1.07991 * 120.00553 * 179.74577 * 25 12 11 46 46 H 1.07997 * 119.99782 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2494 6 7 1.5516 -2.1023 1.2493 7 6 1.8767 -2.9320 2.2605 8 8 2.5753 -2.5346 3.1720 9 6 1.3828 -4.3276 2.2607 10 6 1.7190 -5.1866 3.3080 11 6 1.2644 -6.4875 3.3051 12 6 0.4589 -6.9429 2.2604 13 6 -0.0338 -8.3388 2.2600 14 8 -0.7315 -8.7367 1.3479 15 7 0.2913 -9.1685 3.2712 16 6 -0.1959 -10.5502 3.2704 17 6 0.3061 -11.2604 4.5011 18 1 0.9264 -10.7354 5.2124 19 6 -0.0256 -12.5810 4.7184 20 7 -0.7805 -13.2206 3.8520 21 14 0.5961 -13.4612 6.2443 22 1 1.4192 -12.5272 7.0537 23 1 -0.5594 -13.9295 7.0510 24 1 1.4231 -14.6267 5.8410 25 6 0.1222 -6.0839 1.2134 26 6 0.5813 -4.7843 1.2136 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7216 -1.2489 36 1 1.6766 -0.2073 2.1392 37 1 3.1299 -0.7208 1.2496 38 1 0.9937 -2.4196 0.5220 39 1 2.3392 -4.8330 4.1185 40 1 1.5282 -7.1536 4.1133 41 1 0.8484 -8.8510 3.9990 42 1 -1.2859 -10.5511 3.2691 43 1 0.1690 -11.0636 2.3808 44 1 -1.0141 -14.1495 4.0051 45 1 -0.4977 -6.4374 0.4029 46 1 0.3211 -4.1196 0.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427653481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:30 Heat of formation + Delta-G solvation = -91.229619 kcal Electronic energy + Delta-G solvation = -25365.864089 eV Core-core repulsion = 21639.562445 eV Total energy + Delta-G solvation = -3726.301644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58611 -40.77597 -39.13940 -38.34447 -36.26782 -34.83536 -34.44272 -32.55136 -32.04263 -29.44015 -28.20221 -28.12992 -27.60844 -25.69166 -24.46843 -23.37008 -22.21487 -21.20778 -20.24118 -19.61887 -18.77095 -17.89298 -17.41505 -16.97098 -16.51911 -16.43101 -16.21842 -16.15628 -15.56208 -15.43743 -15.28303 -14.88221 -14.72981 -14.55937 -14.25554 -14.18963 -13.97258 -13.83127 -13.61936 -13.36483 -13.00314 -12.91823 -12.76433 -12.73329 -12.53353 -12.24180 -12.19362 -11.80684 -11.69709 -11.60484 -11.47877 -11.19949 -10.97452 -10.83696 -10.36170 -10.12763 -10.08034 -9.82495 -8.30568 -6.47027 -0.64185 0.26020 1.38139 1.43642 1.44357 1.57836 2.05025 2.11111 2.25740 2.46941 2.82938 3.04851 3.51125 3.63884 3.72744 3.79821 3.85439 3.85573 3.96120 4.19177 4.31296 4.44377 4.54152 4.58487 4.71348 4.83771 4.85435 4.89901 4.91704 5.02003 5.05181 5.07814 5.10287 5.14973 5.16749 5.21016 5.27272 5.28710 5.38219 5.41516 5.45789 5.46337 5.60627 5.68649 5.81640 6.40996 6.62071 6.78194 7.08217 7.19282 7.34540 8.81738 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.002015 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.213007 B =13892.564498 C =14546.110878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.146 4.146 5 C 0.128 3.872 6 N -0.708 5.708 7 C 0.560 3.440 8 O -0.572 6.572 9 C -0.121 4.121 10 C -0.068 4.068 11 C -0.089 4.089 12 C -0.113 4.113 13 C 0.535 3.465 14 O -0.592 6.592 15 N -0.698 5.698 16 C 0.264 3.736 17 C -0.557 4.557 18 H 0.084 0.916 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.984 3.016 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.075 4.075 26 C -0.076 4.076 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.408 0.592 42 H -0.007 1.007 43 H -0.007 1.007 44 H 0.269 0.731 45 H 0.142 0.858 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 29.922 -7.748 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.203 4.203 5 C 0.005 3.995 6 N -0.361 5.361 7 C 0.347 3.653 8 O -0.452 6.452 9 C -0.124 4.124 10 C -0.087 4.087 11 C -0.108 4.108 12 C -0.116 4.116 13 C 0.323 3.677 14 O -0.475 6.475 15 N -0.347 5.347 16 C 0.142 3.858 17 C -0.595 4.595 18 H 0.102 0.898 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.808 3.192 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.094 4.094 26 C -0.095 4.095 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.245 0.755 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.078 0.922 45 H 0.159 0.841 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.747 29.761 -7.781 31.293 hybrid contribution -0.055 -1.122 0.558 1.254 sum 5.692 28.639 -7.224 30.080 Atomic orbital electron populations 1.21931 0.93415 1.02321 1.02647 1.20783 0.96649 0.96337 0.93793 1.21816 1.01328 0.93839 1.02761 1.21932 1.01255 1.00337 0.96788 1.21533 0.98936 0.80364 0.98712 1.45890 1.53137 1.12401 1.24664 1.18355 0.79621 0.85360 0.81929 1.90759 1.39535 1.77608 1.37307 1.20167 1.01068 0.93819 0.97349 1.21291 0.97581 0.91915 0.97906 1.21460 0.95483 0.96362 0.97500 1.20183 1.00708 0.92594 0.98143 1.18998 0.80279 0.86470 0.81989 1.90700 1.40749 1.78301 1.37705 1.46178 1.51614 1.12900 1.24057 1.18650 0.93264 0.77372 0.96558 1.21632 1.33465 0.97305 1.07103 0.89782 1.26042 0.94719 0.98152 1.00554 1.70134 1.37107 1.11732 1.37746 0.85111 0.78115 0.78201 0.77805 1.17702 1.20440 1.20447 1.21322 0.97937 0.92947 0.97178 1.21431 0.95154 0.95096 0.97773 0.92643 0.91190 0.92287 0.92313 0.91088 0.92310 0.92291 0.91189 0.92640 0.91974 0.91971 0.74848 0.83389 0.83411 0.75519 0.98864 0.98875 0.92190 0.84057 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.30 71.98 0.60 -0.41 16 2 C -0.08 -0.58 0.78 -52.18 -0.04 -0.62 16 3 C -0.14 -0.94 8.47 71.98 0.61 -0.33 16 4 C -0.15 -1.00 8.30 71.98 0.60 -0.41 16 5 C 0.13 1.63 4.56 86.38 0.39 2.02 16 6 N -0.71 -9.76 4.91 -465.81 -2.29 -12.05 16 7 C 0.56 11.75 7.78 86.84 0.68 12.43 16 8 O -0.57 -16.22 16.33 -3.79 -0.06 -16.28 16 9 C -0.12 -2.49 5.88 -20.04 -0.12 -2.61 16 10 C -0.07 -1.54 9.58 22.49 0.22 -1.32 16 11 C -0.09 -2.22 9.53 22.49 0.21 -2.01 16 12 C -0.11 -3.41 5.88 -20.04 -0.12 -3.53 16 13 C 0.53 22.07 7.78 86.84 0.68 22.74 16 14 O -0.59 -29.30 16.34 -3.82 -0.06 -29.36 16 15 N -0.70 -29.97 5.50 -469.51 -2.58 -32.55 16 16 C 0.26 14.46 5.43 85.63 0.46 14.92 16 17 C -0.56 -30.17 9.28 25.60 0.24 -29.94 16 18 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 21 Si 0.98 42.17 29.54 68.60 2.03 44.19 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 C -0.07 -1.85 9.58 22.49 0.22 -1.64 16 26 C -0.08 -1.35 9.53 22.49 0.21 -1.13 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.37 6.86 -2.39 -0.02 0.35 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.37 6.86 -2.38 -0.02 0.35 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 3.59 4.19 -92.71 -0.39 3.20 16 39 H 0.15 3.15 7.64 -2.91 -0.02 3.13 16 40 H 0.15 3.25 6.39 -2.91 -0.02 3.23 16 41 H 0.41 14.50 6.34 -92.71 -0.59 13.91 16 42 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.14 3.54 7.64 -2.92 -0.02 3.52 16 46 H 0.17 1.52 6.39 -2.91 -0.02 1.50 16 Total: -1.00 -75.34 381.10 2.64 -72.70 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.02 Total: 19.73 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.30 Total: 8.92 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.58 Total: -99.89 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.12 Total: -45.65 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -75.34 2.64 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427653481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.535 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds