Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47231 * 2 1 4 4 C 1.52999 * 109.46971 * 185.19657 * 3 2 1 5 5 H 1.08997 * 109.47148 * 55.49204 * 4 3 2 6 6 N 1.46906 * 109.47097 * 295.48825 * 4 3 2 7 7 C 1.46901 * 110.99602 * 93.07579 * 6 4 3 8 8 C 1.52993 * 109.47161 * 84.32367 * 7 6 4 9 9 C 1.50697 * 115.55559 * 277.51850 * 8 7 6 10 10 H 1.07994 * 120.00289 * 143.48224 * 9 8 7 11 11 C 1.37882 * 119.99527 * 323.48602 * 9 8 7 12 12 N 1.31509 * 120.00340 * 342.75576 * 11 9 8 13 13 Si 1.86800 * 119.99863 * 162.75111 * 11 9 8 14 14 H 1.48505 * 109.46808 * 89.99767 * 13 11 9 15 15 H 1.48497 * 109.47321 * 209.99988 * 13 11 9 16 16 H 1.48504 * 109.47329 * 330.00298 * 13 11 9 17 17 C 1.53007 * 117.49534 * 131.81041 * 8 7 6 18 18 C 1.52996 * 59.99896 * 252.51118 * 17 8 7 19 19 C 1.50706 * 109.47013 * 175.49418 * 4 3 2 20 20 C 1.38249 * 120.00191 * 79.26375 * 19 4 3 21 21 C 1.38217 * 119.99561 * 179.76541 * 20 19 4 22 22 C 1.38256 * 120.00306 * 0.51215 * 21 20 19 23 23 C 1.38220 * 119.99830 * 359.74128 * 22 21 20 24 24 N 1.48017 * 119.99818 * 179.97438 * 23 22 21 25 25 O 1.21799 * 119.99984 * 180.02562 * 24 23 22 26 26 O 1.21798 * 120.00156 * 0.02562 * 24 23 22 27 27 C 1.38215 * 119.99537 * 259.54099 * 19 4 3 28 28 H 1.08993 * 109.46925 * 299.99740 * 1 2 3 29 29 H 1.09004 * 109.46792 * 60.00099 * 1 2 3 30 30 H 1.09005 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46948 * 239.99866 * 2 1 3 32 32 H 1.09000 * 109.47209 * 120.00516 * 2 1 3 33 33 H 1.09000 * 109.47226 * 65.19448 * 3 2 1 34 34 H 1.09000 * 109.47347 * 305.19952 * 3 2 1 35 35 H 1.00902 * 111.00027 * 217.02777 * 6 4 3 36 36 H 1.09003 * 109.46459 * 204.32642 * 7 6 4 37 37 H 1.08997 * 109.47108 * 324.31904 * 7 6 4 38 38 H 0.97000 * 120.00124 * 185.00101 * 12 11 9 39 39 H 1.08996 * 117.49868 * 0.02562 * 17 8 7 40 40 H 1.09003 * 117.49472 * 145.02155 * 17 8 7 41 41 H 1.09005 * 117.50071 * 252.50704 * 18 17 8 42 42 H 1.09007 * 117.51730 * 107.48750 * 18 17 8 43 43 H 1.07996 * 120.00252 * 0.02562 * 20 19 4 44 44 H 1.08006 * 119.99718 * 180.23305 * 21 20 19 45 45 H 1.07999 * 120.00344 * 179.72601 * 22 21 20 46 46 H 1.08004 * 120.00174 * 0.02562 * 27 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5645 1.4443 -0.1307 5 1 3.8534 0.8884 -1.0226 6 7 4.1583 0.8114 1.0546 7 6 4.3864 -0.6219 0.8274 8 6 5.7250 -0.8183 0.1132 9 6 5.6968 -0.6360 -1.3824 10 1 6.5359 -0.1800 -1.8867 11 6 4.5996 -1.0512 -2.1069 12 7 3.7415 -1.8943 -1.5756 13 14 4.3319 -0.4160 -3.8430 14 1 5.0024 -1.3216 -4.8103 15 1 2.8766 -0.3703 -4.1346 16 1 4.9042 0.9490 -3.9645 17 6 6.6796 -1.8718 0.6790 18 6 6.9914 -0.3842 0.8541 19 6 4.0573 2.8642 -0.2420 20 6 4.1738 3.6464 0.8920 21 6 4.6304 4.9470 0.7904 22 6 4.9606 5.4691 -0.4465 23 6 4.8393 4.6887 -1.5808 24 7 5.1923 5.2479 -2.9050 25 8 5.0849 4.5603 -3.9047 26 8 5.5902 6.3955 -2.9951 27 6 4.3875 3.3861 -1.4785 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.7547 1.9287 0.9328 34 1 1.6027 1.9825 -0.8397 35 1 5.0133 1.2757 1.3223 36 1 4.4053 -1.1429 1.7847 37 1 3.5829 -1.0243 0.2106 38 1 3.0101 -2.2426 -2.1092 39 1 6.3537 -2.4251 1.5597 40 1 7.2873 -2.4333 -0.0307 41 1 7.8042 0.0330 0.2596 42 1 6.8708 0.0418 1.8501 43 1 3.9119 3.2399 1.8577 44 1 4.7249 5.5569 1.6767 45 1 5.3132 6.4868 -0.5264 46 1 4.2919 2.7765 -2.3649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430745222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = 38.163765 kcal Electronic energy + Delta-G solvation = -28181.293232 eV Core-core repulsion = 24460.602506 eV Total energy + Delta-G solvation = -3720.690726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02103 -39.75646 -37.68882 -36.41014 -35.63376 -32.91034 -32.38821 -31.75041 -31.23883 -27.90566 -26.45732 -25.85958 -24.90238 -22.93642 -22.53418 -21.28384 -21.03615 -20.20613 -19.10788 -18.51997 -18.44904 -17.37179 -16.62031 -16.36583 -15.70380 -15.14441 -14.81575 -14.65857 -14.13960 -13.89853 -13.66342 -13.17577 -13.14199 -12.92597 -12.50934 -12.23357 -12.06586 -11.85422 -11.73651 -11.41716 -11.32240 -11.10497 -11.09736 -11.03712 -10.99800 -10.88687 -10.55370 -10.38313 -10.28207 -10.06260 -9.93734 -9.69707 -9.49365 -9.17502 -8.98725 -8.85126 -8.22354 -7.52473 -6.24924 -4.23928 -0.01547 1.02573 1.50240 1.56206 3.13462 3.25191 3.32347 3.38131 4.20614 4.39479 4.53410 4.74260 4.85978 4.90027 5.02102 5.12752 5.28340 5.40947 5.49405 5.58052 5.64445 5.72510 5.81013 5.98439 5.99674 6.03895 6.14135 6.15620 6.23176 6.29842 6.36218 6.37617 6.44671 6.52534 6.56401 6.62296 6.66526 6.77375 6.88584 6.92998 7.07183 7.15735 7.28801 7.40231 7.75069 7.79166 7.98615 8.13216 8.36733 8.70026 9.30703 10.74277 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.005600 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.183885 B = 4999.176449 C = 5282.797243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.096 4.096 4 C 0.109 3.891 5 H 0.105 0.895 6 N -0.673 5.673 7 C 0.063 3.937 8 C 0.025 3.975 9 C -0.489 4.489 10 H 0.058 0.942 11 C 0.077 3.923 12 N -0.865 5.865 13 Si 0.860 3.140 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.198 4.198 18 C -0.215 4.215 19 C -0.066 4.066 20 C -0.057 4.057 21 C -0.122 4.122 22 C -0.068 4.068 23 C -0.046 4.046 24 N 0.031 4.969 25 O -0.161 6.161 26 O -0.171 6.171 27 C -0.045 4.045 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.326 0.674 36 H 0.039 0.961 37 H 0.142 0.858 38 H 0.265 0.735 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 9.338 6.177 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.001 4.001 5 H 0.122 0.878 6 N -0.301 5.301 7 C -0.065 4.065 8 C 0.023 3.977 9 C -0.526 4.526 10 H 0.076 0.924 11 C -0.126 4.126 12 N -0.502 5.502 13 Si 0.686 3.314 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.237 4.237 18 C -0.253 4.253 19 C -0.068 4.068 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.087 4.087 23 C -0.129 4.129 24 N 0.549 4.451 25 O -0.377 6.377 26 O -0.385 6.385 27 C -0.065 4.065 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.057 0.943 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.580 8.925 7.097 12.289 hybrid contribution 1.093 0.386 -1.921 2.243 sum -3.487 9.311 5.177 11.210 Atomic orbital electron populations 1.21787 0.97368 1.00928 1.00523 1.21695 0.93898 0.96454 1.04531 1.21572 0.93638 0.97697 1.00539 1.20897 0.94327 0.87556 0.97290 0.87778 1.61102 1.31363 1.04952 1.32730 1.22275 1.00225 0.85943 0.98089 1.19809 0.87512 0.96458 0.93933 1.20532 1.02109 1.40152 0.89853 0.92418 1.24854 0.95816 0.94334 0.97588 1.69793 1.16389 1.27764 1.36269 0.87077 0.78261 0.80801 0.85256 1.20229 1.20283 1.18653 1.22916 1.08196 0.90591 1.01999 1.22833 1.03392 0.98709 1.00328 1.20392 0.97161 0.97996 0.91202 1.21627 0.93288 0.92739 0.99847 1.21179 1.00147 0.96122 0.96586 1.20962 0.96829 1.00395 0.90516 1.21089 1.12691 0.96355 0.82730 1.43683 0.97738 1.00389 1.03243 1.94580 1.57329 1.59059 1.26780 1.94480 1.47941 1.02967 1.93157 1.21112 0.93081 0.91962 1.00326 0.93610 0.93706 0.93161 0.89944 0.90806 0.92304 0.93216 0.85634 0.94263 0.84060 0.92398 0.91746 0.90740 0.91095 0.91500 0.83357 0.83885 0.83507 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.13 -2.15 4.47 -26.73 -0.12 -2.27 16 3 C -0.10 -1.51 4.87 -26.73 -0.13 -1.65 16 4 C 0.11 1.87 2.27 -68.86 -0.16 1.71 16 5 H 0.10 2.15 4.15 -51.93 -0.22 1.93 16 6 N -0.67 -11.66 5.83 -107.95 -0.63 -12.28 16 7 C 0.06 1.28 4.83 -3.83 -0.02 1.27 16 8 C 0.02 0.55 1.83 -155.66 -0.28 0.26 16 9 C -0.49 -12.03 7.92 -34.44 -0.27 -12.30 16 10 H 0.06 1.49 7.87 -52.49 -0.41 1.08 16 11 C 0.08 1.86 3.55 -17.82 -0.06 1.80 16 12 N -0.87 -20.93 9.58 55.43 0.53 -20.40 16 13 Si 0.86 19.28 29.28 -169.99 -4.98 14.31 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 17 C -0.20 -4.29 9.88 -26.73 -0.26 -4.55 16 18 C -0.22 -4.36 9.26 -26.73 -0.25 -4.61 16 19 C -0.07 -1.01 4.71 -104.62 -0.49 -1.50 16 20 C -0.06 -0.69 8.86 -39.58 -0.35 -1.04 16 21 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.07 -0.83 9.56 -39.58 -0.38 -1.21 16 23 C -0.05 -0.71 6.85 -79.95 -0.55 -1.26 16 24 N 0.03 0.54 4.45 33.96 0.15 0.70 16 25 O -0.16 -3.08 18.45 -29.46 -0.54 -3.63 16 26 O -0.17 -2.88 18.45 -29.46 -0.54 -3.42 16 27 C -0.05 -0.75 9.18 -39.58 -0.36 -1.11 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.60 6.39 -51.93 -0.33 1.27 16 32 H 0.07 1.31 6.51 -51.93 -0.34 0.98 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.33 5.53 6.61 -39.29 -0.26 5.27 16 36 H 0.04 0.80 7.92 -51.93 -0.41 0.39 16 37 H 0.14 3.08 2.42 -51.93 -0.13 2.95 16 38 H 0.27 6.23 8.32 -40.82 -0.34 5.89 16 39 H 0.06 1.31 8.07 -51.93 -0.42 0.90 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 43 H 0.15 1.59 7.70 -52.49 -0.40 1.19 16 44 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.15 1.51 7.61 -52.49 -0.40 1.11 16 46 H 0.15 2.74 7.59 -52.48 -0.40 2.34 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -25.08 369.53 -10.81 -35.88 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.65 Total: 13.12 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -3.72 Total: -29.84 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.05 Total: -31.99 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -1.09 Total: -7.05 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.98 Total: 14.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -25.08 -10.81 -35.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430745222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.048 kcal (2) G-P(sol) polarization free energy of solvation -25.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds