Wall clock time and date at job start Tue Mar 31 2020 13:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00148 * 2 1 4 4 O 1.21281 * 119.99599 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00001 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.46907 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47670 * 54.19340 * 6 5 3 8 8 C 1.50703 * 109.47218 * 294.18811 * 6 5 3 9 9 H 1.07998 * 119.99880 * 334.58937 * 8 6 5 10 10 C 1.37872 * 120.00041 * 154.58147 * 8 6 5 11 11 N 1.31517 * 120.00273 * 5.11267 * 10 8 6 12 12 Si 1.86801 * 120.00022 * 185.10885 * 10 8 6 13 13 H 1.48501 * 109.47268 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47175 * 300.00311 * 12 10 8 15 15 H 1.48499 * 109.47065 * 60.00331 * 12 10 8 16 16 C 1.50703 * 109.47056 * 174.19472 * 6 5 3 17 17 C 1.38237 * 119.99939 * 55.53970 * 16 6 5 18 18 C 1.38240 * 119.99602 * 179.80963 * 17 16 6 19 19 C 1.38232 * 120.00387 * 0.40432 * 18 17 16 20 20 C 1.38241 * 119.99528 * 359.85481 * 19 18 17 21 21 C 1.38233 * 119.99832 * 235.81847 * 16 6 5 22 22 C 1.46500 * 119.99906 * 180.02562 * 2 1 3 23 23 C 1.52995 * 109.47037 * 244.64155 * 22 2 1 24 24 C 1.53005 * 109.47055 * 4.64125 * 22 2 1 25 25 C 1.50694 * 109.47467 * 124.63755 * 22 2 1 26 26 N 1.34776 * 120.00128 * 325.24796 * 25 22 2 27 27 O 1.21285 * 120.00232 * 145.23887 * 25 22 2 28 28 H 1.08998 * 109.47952 * 94.86600 * 1 2 3 29 29 H 1.09004 * 109.47326 * 214.87416 * 1 2 3 30 30 H 1.09002 * 109.47225 * 334.86523 * 1 2 3 31 31 H 1.08997 * 109.46840 * 59.99955 * 5 3 2 32 32 H 1.09002 * 109.47200 * 300.00574 * 5 3 2 33 33 H 0.97008 * 119.99423 * 354.90047 * 11 10 8 34 34 H 1.07998 * 120.00199 * 0.02562 * 17 16 6 35 35 H 1.08001 * 119.99920 * 180.23025 * 18 17 16 36 36 H 1.07996 * 120.00284 * 179.82818 * 19 18 17 37 37 H 1.07998 * 119.99757 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.00343 * 359.97438 * 21 16 6 39 39 H 1.09008 * 109.47268 * 59.99720 * 23 22 2 40 40 H 1.09002 * 109.47390 * 179.97438 * 23 22 2 41 41 H 1.08994 * 109.47395 * 299.99784 * 23 22 2 42 42 H 1.09000 * 109.47459 * 59.99934 * 24 22 2 43 43 H 1.09002 * 109.47167 * 180.02562 * 24 22 2 44 44 H 1.09008 * 109.46878 * 300.00052 * 24 22 2 45 45 H 0.96996 * 120.00155 * 5.17890 * 26 25 22 46 46 H 0.97005 * 119.99861 * 185.18842 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3797 3.6351 -0.0002 7 1 3.0722 3.5206 -0.8341 8 6 3.1497 3.6386 1.2953 9 1 2.7177 3.1974 2.1814 10 6 4.4056 4.2049 1.3493 11 7 4.8906 4.8304 0.2990 12 14 5.4182 4.0838 2.9143 13 1 6.7208 4.7686 2.7153 14 1 4.6840 4.7322 4.0305 15 1 5.6547 2.6547 3.2415 16 6 1.6317 4.9356 -0.1433 17 6 0.6277 5.2574 0.7507 18 6 -0.0558 6.4521 0.6217 19 6 0.2591 7.3211 -0.4062 20 6 1.2595 6.9967 -1.3034 21 6 1.9457 5.8038 -1.1721 22 6 2.1975 -1.2687 -0.0006 23 6 2.9874 -1.4021 1.3028 24 6 1.2073 -2.4292 -0.1178 25 6 3.1480 -1.2996 -1.1695 26 7 2.8043 -0.7129 -2.3332 27 8 4.2224 -1.8522 -1.0631 28 1 -0.3635 -0.0872 -1.0239 29 1 -0.3634 -0.8431 0.5876 30 1 -0.3634 0.9304 0.4365 31 1 0.7592 2.5298 0.8908 32 1 0.7583 2.5302 -0.8891 33 1 4.3974 4.8300 -0.5363 34 1 0.3796 4.5772 1.5520 35 1 -0.8376 6.7053 1.3224 36 1 -0.2768 8.2531 -0.5086 37 1 1.5052 7.6753 -2.1068 38 1 2.7272 5.5505 -1.8730 39 1 2.2999 -1.3798 2.1484 40 1 3.5321 -2.3463 1.3027 41 1 3.6929 -0.5754 1.3864 42 1 0.6444 -2.3343 -1.0464 43 1 1.7522 -3.3733 -0.1178 44 1 0.5197 -2.4070 0.7278 45 1 1.9793 -0.2068 -2.3961 46 1 3.3820 -0.7969 -3.1079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452628715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:07 Heat of formation + Delta-G solvation = -48.516863 kcal Electronic energy + Delta-G solvation = -28132.735027 eV Core-core repulsion = 24408.285547 eV Total energy + Delta-G solvation = -3724.449480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60080 -38.79991 -38.14861 -35.98419 -34.30077 -33.32257 -32.47965 -31.18656 -30.12939 -28.78769 -28.06322 -26.03196 -25.20750 -23.40493 -22.80910 -21.74012 -20.71350 -19.61533 -18.63456 -17.32627 -16.92134 -16.81081 -16.40254 -15.83096 -15.21080 -15.01439 -14.61222 -14.22130 -14.04116 -13.88313 -13.65833 -13.26550 -13.17535 -12.89963 -12.70788 -12.59541 -12.39785 -12.28571 -11.99189 -11.93173 -11.84975 -11.69084 -11.43147 -11.28053 -10.98547 -10.71289 -10.47400 -10.17448 -10.04372 -9.86433 -9.66293 -9.47035 -9.04732 -8.70846 -8.41457 -8.28692 -8.16368 -7.64392 -6.24623 -3.93554 2.16541 2.22571 2.71507 3.18307 3.32553 3.49546 3.56617 3.70586 3.70931 4.58708 4.65257 4.67432 4.81991 5.03545 5.07795 5.27706 5.32589 5.43294 5.54189 5.57391 5.58664 5.59379 5.65619 5.73191 5.80785 5.89160 5.90949 5.98913 6.01394 6.11220 6.27564 6.37749 6.50971 6.61102 6.71830 6.77147 6.89183 6.96072 7.15611 7.19941 7.34589 7.47914 7.68404 7.71381 7.82995 8.16996 8.45427 8.48089 8.82546 8.95409 9.74774 11.14958 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.005042 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.025746 B = 5551.594591 C = 6711.079601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.632 5.632 3 C 0.510 3.490 4 O -0.478 6.478 5 C -0.113 4.113 6 C 0.073 3.927 7 H 0.047 0.953 8 C -0.566 4.566 9 H 0.045 0.955 10 C 0.032 3.968 11 N -0.904 5.904 12 Si 1.060 2.940 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.288 1.288 16 C -0.029 4.029 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.154 4.154 20 C -0.123 4.123 21 C -0.125 4.125 22 C 0.160 3.840 23 C -0.150 4.150 24 C -0.148 4.148 25 C 0.533 3.467 26 N -0.849 5.849 27 O -0.540 6.540 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.270 0.730 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.398 0.602 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -8.695 -3.386 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.373 5.373 3 C 0.298 3.702 4 O -0.348 6.348 5 C -0.153 4.153 6 C 0.054 3.946 7 H 0.066 0.934 8 C -0.603 4.603 9 H 0.063 0.937 10 C -0.174 4.174 11 N -0.539 5.539 12 Si 0.890 3.110 13 H -0.209 1.209 14 H -0.218 1.218 15 H -0.214 1.214 16 C -0.030 4.030 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.172 4.172 20 C -0.141 4.141 21 C -0.143 4.143 22 C 0.072 3.928 23 C -0.208 4.208 24 C -0.206 4.206 25 C 0.317 3.683 26 N -0.411 5.411 27 O -0.416 6.416 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.226 0.774 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.751 -8.599 -2.433 14.762 hybrid contribution -1.729 -0.048 -0.921 1.959 sum -13.479 -8.646 -3.353 16.361 Atomic orbital electron populations 1.21822 0.80074 1.03538 1.01357 1.48402 1.06515 1.04800 1.77547 1.21039 0.88712 0.84600 0.75862 1.90798 1.13463 1.86049 1.44448 1.21716 0.99211 0.92961 1.01408 1.17862 0.91504 0.85145 1.00068 0.93441 1.21510 1.02327 1.42074 0.94383 0.93665 1.25569 0.95724 0.92703 1.03411 1.70777 1.42680 1.38118 1.02369 0.83669 0.76418 0.76313 0.74641 1.20918 1.21760 1.21408 1.20781 0.92019 0.98909 0.91305 1.20867 0.96812 0.96684 0.98958 1.20982 1.00338 0.95099 0.98191 1.20816 0.99800 0.99494 0.97124 1.20977 0.96899 0.96950 0.99248 1.21036 0.99666 0.94814 0.98825 1.20453 0.92073 0.85480 0.94843 1.22029 1.00599 1.04301 0.93874 1.22083 0.98692 0.96844 1.02986 1.20560 0.86872 0.77017 0.83893 1.43705 1.27689 1.56362 1.13384 1.90710 1.22567 1.45384 1.82916 0.93079 0.91212 0.90396 0.90081 0.91613 0.91856 0.87012 0.87498 0.87604 0.87473 0.87121 0.92077 0.91177 0.89850 0.91597 0.90646 0.90448 0.77402 0.77167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 9.35 59.85 0.56 1.24 16 2 N -0.63 -8.64 2.11 -167.88 -0.35 -9.00 16 3 C 0.51 9.44 6.35 -10.99 -0.07 9.37 16 4 O -0.48 -11.40 12.32 5.56 0.07 -11.33 16 5 C -0.11 -2.03 3.30 -27.89 -0.09 -2.12 16 6 C 0.07 1.69 1.27 -92.92 -0.12 1.57 16 7 H 0.05 1.24 6.42 -51.93 -0.33 0.91 16 8 C -0.57 -15.13 6.67 -34.44 -0.23 -15.36 16 9 H 0.05 1.22 7.81 -52.49 -0.41 0.81 16 10 C 0.03 0.91 5.45 -17.82 -0.10 0.81 16 11 N -0.90 -27.38 13.63 55.43 0.76 -26.63 16 12 Si 1.06 26.50 29.91 -169.99 -5.08 21.42 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 C -0.03 -0.63 4.71 -104.62 -0.49 -1.12 16 17 C -0.12 -2.24 8.94 -39.58 -0.35 -2.59 16 18 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 19 C -0.15 -2.62 10.05 -39.58 -0.40 -3.01 16 20 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 21 C -0.13 -2.59 9.07 -39.58 -0.36 -2.95 16 22 C 0.16 2.24 0.98 -132.97 -0.13 2.11 16 23 C -0.15 -2.37 8.00 37.16 0.30 -2.07 16 24 C -0.15 -1.39 7.36 37.16 0.27 -1.12 16 25 C 0.53 8.86 5.34 -10.99 -0.06 8.81 16 26 N -0.85 -11.43 8.54 31.22 0.27 -11.16 16 27 O -0.54 -11.13 16.94 5.55 0.09 -11.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.49 6.05 -51.93 -0.31 0.18 16 30 H 0.08 0.71 6.27 -51.93 -0.33 0.38 16 31 H 0.08 1.37 6.65 -51.93 -0.35 1.02 16 32 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.27 8.01 5.68 -40.82 -0.23 7.77 16 34 H 0.11 2.07 7.40 -52.49 -0.39 1.68 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.11 2.32 7.57 -52.49 -0.40 1.93 16 39 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 41 H 0.08 1.70 6.52 -51.93 -0.34 1.36 16 42 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.59 6.71 -51.92 -0.35 0.24 16 45 H 0.40 4.58 7.89 -40.82 -0.32 4.26 16 46 H 0.40 4.90 8.93 -40.82 -0.36 4.54 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -35.86 368.06 -7.46 -43.32 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.69 Total: 10.55 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.06 Total: -11.69 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.67 Total: -46.78 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.16 Total: -22.36 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.08 Total: 21.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.86 -7.46 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452628715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.193 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds