Wall clock time and date at job start Tue Mar 31 2020 13:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34778 * 120.00148 * 2 1 4 4 O 1.21281 * 119.99599 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00001 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.46907 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47670 * 54.19340 * 6 5 3 8 8 C 1.50703 * 109.47218 * 294.18811 * 6 5 3 9 9 H 1.07998 * 119.99880 * 334.58937 * 8 6 5 10 10 C 1.37872 * 120.00041 * 154.58147 * 8 6 5 11 11 N 1.31517 * 120.00273 * 5.11267 * 10 8 6 12 12 Si 1.86801 * 120.00022 * 185.10885 * 10 8 6 13 13 H 1.48501 * 109.47268 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47175 * 300.00311 * 12 10 8 15 15 H 1.48499 * 109.47065 * 60.00331 * 12 10 8 16 16 C 1.50703 * 109.47056 * 174.19472 * 6 5 3 17 17 C 1.38237 * 119.99939 * 55.53970 * 16 6 5 18 18 C 1.38240 * 119.99602 * 179.80963 * 17 16 6 19 19 C 1.38232 * 120.00387 * 0.40432 * 18 17 16 20 20 C 1.38241 * 119.99528 * 359.85481 * 19 18 17 21 21 C 1.38233 * 119.99832 * 235.81847 * 16 6 5 22 22 C 1.46500 * 119.99906 * 180.02562 * 2 1 3 23 23 C 1.52995 * 109.47037 * 244.64155 * 22 2 1 24 24 C 1.53005 * 109.47055 * 4.64125 * 22 2 1 25 25 C 1.50694 * 109.47467 * 124.63755 * 22 2 1 26 26 N 1.34776 * 120.00128 * 325.24796 * 25 22 2 27 27 O 1.21285 * 120.00232 * 145.23887 * 25 22 2 28 28 H 1.08998 * 109.47952 * 94.86600 * 1 2 3 29 29 H 1.09004 * 109.47326 * 214.87416 * 1 2 3 30 30 H 1.09002 * 109.47225 * 334.86523 * 1 2 3 31 31 H 1.08997 * 109.46840 * 59.99955 * 5 3 2 32 32 H 1.09002 * 109.47200 * 300.00574 * 5 3 2 33 33 H 0.97008 * 119.99423 * 354.90047 * 11 10 8 34 34 H 1.07998 * 120.00199 * 0.02562 * 17 16 6 35 35 H 1.08001 * 119.99920 * 180.23025 * 18 17 16 36 36 H 1.07996 * 120.00284 * 179.82818 * 19 18 17 37 37 H 1.07998 * 119.99757 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.00343 * 359.97438 * 21 16 6 39 39 H 1.09008 * 109.47268 * 59.99720 * 23 22 2 40 40 H 1.09002 * 109.47390 * 179.97438 * 23 22 2 41 41 H 1.08994 * 109.47395 * 299.99784 * 23 22 2 42 42 H 1.09000 * 109.47459 * 59.99934 * 24 22 2 43 43 H 1.09002 * 109.47167 * 180.02562 * 24 22 2 44 44 H 1.09008 * 109.46878 * 300.00052 * 24 22 2 45 45 H 0.96996 * 120.00155 * 5.17890 * 26 25 22 46 46 H 0.97005 * 119.99861 * 185.18842 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3797 3.6351 -0.0002 7 1 3.0722 3.5206 -0.8341 8 6 3.1497 3.6386 1.2953 9 1 2.7177 3.1974 2.1814 10 6 4.4056 4.2049 1.3493 11 7 4.8906 4.8304 0.2990 12 14 5.4182 4.0838 2.9143 13 1 6.7208 4.7686 2.7153 14 1 4.6840 4.7322 4.0305 15 1 5.6547 2.6547 3.2415 16 6 1.6317 4.9356 -0.1433 17 6 0.6277 5.2574 0.7507 18 6 -0.0558 6.4521 0.6217 19 6 0.2591 7.3211 -0.4062 20 6 1.2595 6.9967 -1.3034 21 6 1.9457 5.8038 -1.1721 22 6 2.1975 -1.2687 -0.0006 23 6 2.9874 -1.4021 1.3028 24 6 1.2073 -2.4292 -0.1178 25 6 3.1480 -1.2996 -1.1695 26 7 2.8043 -0.7129 -2.3332 27 8 4.2224 -1.8522 -1.0631 28 1 -0.3635 -0.0872 -1.0239 29 1 -0.3634 -0.8431 0.5876 30 1 -0.3634 0.9304 0.4365 31 1 0.7592 2.5298 0.8908 32 1 0.7583 2.5302 -0.8891 33 1 4.3974 4.8300 -0.5363 34 1 0.3796 4.5772 1.5520 35 1 -0.8376 6.7053 1.3224 36 1 -0.2768 8.2531 -0.5086 37 1 1.5052 7.6753 -2.1068 38 1 2.7272 5.5505 -1.8730 39 1 2.2999 -1.3798 2.1484 40 1 3.5321 -2.3463 1.3027 41 1 3.6929 -0.5754 1.3864 42 1 0.6444 -2.3343 -1.0464 43 1 1.7522 -3.3733 -0.1178 44 1 0.5197 -2.4070 0.7278 45 1 1.9793 -0.2068 -2.3961 46 1 3.3820 -0.7969 -3.1079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452628715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:06 Heat of formation + Delta-G solvation = -73.963216 kcal Electronic energy + Delta-G solvation = -28133.838464 eV Core-core repulsion = 24408.285547 eV Total energy + Delta-G solvation = -3725.552917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87609 -40.28373 -39.57467 -37.29953 -36.04977 -34.57275 -33.84206 -32.88868 -31.58616 -30.23495 -29.00894 -27.08307 -27.00767 -24.94018 -24.20047 -23.20805 -22.09566 -21.14736 -19.90997 -18.83636 -18.48328 -18.12544 -17.75569 -17.17145 -16.48128 -16.40818 -15.96921 -15.71126 -15.61653 -15.39863 -15.22104 -14.70885 -14.55893 -14.10631 -14.02602 -13.89079 -13.64053 -13.47252 -13.41193 -13.19670 -13.10443 -12.98706 -12.70158 -12.57134 -12.54810 -12.36947 -12.09619 -11.97062 -11.70860 -11.40782 -11.17305 -10.73647 -10.70593 -10.55976 -10.31271 -9.62148 -9.59509 -9.25005 -8.44027 -6.11133 0.69795 0.76046 1.43851 1.46833 1.55328 1.69105 1.82196 2.08672 2.56681 2.58367 3.12057 3.37638 3.65929 3.75938 3.99772 4.06948 4.12547 4.29333 4.30368 4.31897 4.44012 4.49837 4.59605 4.62901 4.66594 4.68996 4.78156 4.82466 4.86853 4.88240 4.96552 5.10751 5.18324 5.23988 5.26222 5.41676 5.43960 5.60576 5.76706 5.81078 5.84152 5.96301 6.21839 6.30675 6.32331 6.40664 6.50596 6.78848 7.24070 7.45784 7.63047 8.95636 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.005042 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.025746 B = 5551.594591 C = 6711.079601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.616 5.616 3 C 0.507 3.493 4 O -0.545 6.545 5 C -0.104 4.104 6 C 0.076 3.924 7 H 0.001 0.999 8 C -0.551 4.551 9 H 0.038 0.962 10 C -0.026 4.026 11 N -0.943 5.943 12 Si 1.093 2.907 13 H -0.291 1.291 14 H -0.265 1.265 15 H -0.290 1.290 16 C -0.052 4.052 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.149 4.149 22 C 0.159 3.841 23 C -0.147 4.147 24 C -0.140 4.140 25 C 0.522 3.478 26 N -0.836 5.836 27 O -0.592 6.592 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.260 0.740 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.409 0.591 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 -8.580 -2.692 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.354 5.354 3 C 0.296 3.704 4 O -0.420 6.420 5 C -0.144 4.144 6 C 0.057 3.943 7 H 0.019 0.981 8 C -0.589 4.589 9 H 0.056 0.944 10 C -0.225 4.225 11 N -0.582 5.582 12 Si 0.918 3.082 13 H -0.217 1.217 14 H -0.190 1.190 15 H -0.217 1.217 16 C -0.053 4.053 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.164 4.164 20 C -0.144 4.144 21 C -0.168 4.168 22 C 0.071 3.929 23 C -0.205 4.205 24 C -0.198 4.198 25 C 0.307 3.693 26 N -0.398 5.398 27 O -0.472 6.472 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.239 0.761 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.564 -8.487 -1.749 18.694 hybrid contribution -0.396 -0.082 -1.205 1.271 sum -16.960 -8.569 -2.954 19.230 Atomic orbital electron populations 1.22279 0.76398 1.05201 1.04093 1.48279 1.08523 1.03218 1.75420 1.21175 0.87945 0.86106 0.75179 1.90796 1.16257 1.87125 1.47781 1.21586 0.98218 0.90893 1.03679 1.17673 0.91944 0.88408 0.96322 0.98063 1.21786 1.02183 1.39469 0.95505 0.94371 1.26603 0.97592 0.93277 1.05000 1.70848 1.43397 1.41137 1.02772 0.83243 0.75478 0.76129 0.73320 1.21661 1.18996 1.21683 1.20575 0.93660 0.98036 0.92994 1.21003 0.96597 0.98094 0.98583 1.21401 1.00245 0.93785 0.98517 1.21289 0.98703 1.00589 0.95792 1.21272 0.96780 0.96072 1.00317 1.21045 1.00145 0.96410 0.99171 1.20537 0.92688 0.87208 0.92494 1.21974 1.00340 1.02020 0.96171 1.22122 0.97884 0.94246 1.05510 1.21182 0.86723 0.76317 0.85113 1.43619 1.28006 1.55286 1.12870 1.90676 1.24760 1.47889 1.83880 0.90011 0.88156 0.90018 0.88301 0.88428 0.92906 0.86295 0.83760 0.83727 0.85215 0.89385 0.89689 0.91114 0.95236 0.89206 0.90559 0.87606 0.76081 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 9.35 127.77 1.19 2.02 16 2 N -0.62 -15.68 2.11 -803.42 -1.70 -17.38 16 3 C 0.51 18.88 6.35 87.66 0.56 19.44 16 4 O -0.54 -27.47 12.32 -3.03 -0.04 -27.51 16 5 C -0.10 -3.67 3.30 29.85 0.10 -3.58 16 6 C 0.08 3.61 1.27 -12.29 -0.02 3.59 16 7 H 0.00 0.06 6.42 -2.39 -0.02 0.05 16 8 C -0.55 -30.49 6.67 25.60 0.17 -30.32 16 9 H 0.04 2.10 7.81 -2.91 -0.02 2.08 16 10 C -0.03 -1.56 5.45 84.65 0.46 -1.10 16 11 N -0.94 -60.42 13.63 21.45 0.29 -60.13 16 12 Si 1.09 55.37 29.91 68.60 2.05 57.42 16 13 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 14 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 16 C -0.05 -2.25 4.71 -19.86 -0.09 -2.34 16 17 C -0.12 -4.60 8.94 22.27 0.20 -4.40 16 18 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 19 C -0.15 -4.37 10.05 22.27 0.22 -4.15 16 20 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 21 C -0.15 -6.32 9.07 22.27 0.20 -6.12 16 22 C 0.16 4.27 0.98 2.86 0.00 4.27 16 23 C -0.15 -4.71 8.00 71.98 0.58 -4.13 16 24 C -0.14 -2.11 7.36 71.98 0.53 -1.58 16 25 C 0.52 17.66 5.34 87.66 0.47 18.13 16 26 N -0.84 -22.56 8.54 -173.53 -1.48 -24.04 16 27 O -0.59 -25.66 16.94 -3.05 -0.05 -25.71 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.82 6.05 -2.39 -0.01 0.81 16 30 H 0.08 1.11 6.27 -2.39 -0.01 1.10 16 31 H 0.10 3.13 6.65 -2.39 -0.02 3.11 16 32 H 0.10 2.79 8.11 -2.39 -0.02 2.77 16 33 H 0.26 16.61 5.68 -92.70 -0.53 16.08 16 34 H 0.12 4.12 7.40 -2.91 -0.02 4.10 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.09 4.00 7.57 -2.91 -0.02 3.98 16 39 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.07 2.20 7.87 -2.39 -0.02 2.18 16 41 H 0.03 1.26 6.52 -2.39 -0.02 1.24 16 42 H 0.09 0.96 7.88 -2.39 -0.02 0.94 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.11 1.03 6.71 -2.38 -0.02 1.01 16 45 H 0.41 8.98 7.89 -92.71 -0.73 8.25 16 46 H 0.40 10.17 8.93 -92.70 -0.83 9.35 16 Total: -1.00 -87.20 368.06 3.79 -83.41 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.31 Total: 31.87 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.02 Total: -17.92 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -2.89 Total: -101.55 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.09 Total: -53.22 kcal Atomic # 14 Polarization: 55.37 SS G_CDS: 2.05 Total: 57.42 kcal Total: -87.20 3.79 -83.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452628715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.447 kcal (2) G-P(sol) polarization free energy of solvation -87.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds