Wall clock time and date at job start Tue Mar 31 2020 12:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46780 * 2 1 4 4 C 1.53003 * 109.46780 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47063 * 305.00092 * 4 3 2 6 6 C 1.53002 * 109.46945 * 185.00405 * 4 3 2 7 7 N 1.46498 * 109.47239 * 65.00270 * 4 3 2 8 8 C 1.46503 * 119.99818 * 59.99786 * 7 4 3 9 9 C 1.34778 * 120.00174 * 240.00234 * 7 4 3 10 10 O 1.21355 * 119.99822 * 5.05682 * 9 7 4 11 11 C 1.49350 * 120.00010 * 185.06062 * 9 7 4 12 12 O 1.21383 * 120.00258 * 6.40542 * 11 9 7 13 13 N 1.34780 * 120.00196 * 186.41022 * 11 9 7 14 14 C 1.39744 * 120.00174 * 174.41840 * 13 11 9 15 15 C 1.39338 * 119.95148 * 146.19167 * 14 13 11 16 16 C 1.38474 * 120.42389 * 179.97438 * 15 14 13 17 17 C 1.37695 * 120.32497 * 359.97438 * 16 15 14 18 18 C 1.40751 * 119.89915 * 0.02562 * 17 16 15 19 19 C 1.41406 * 120.20930 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00048 * 210.88528 * 19 18 17 21 21 C 1.39934 * 120.00035 * 30.88093 * 19 18 17 22 22 N 1.30831 * 119.99900 * 8.31521 * 21 19 18 23 23 Si 1.86796 * 120.00126 * 188.31344 * 21 19 18 24 24 H 1.48498 * 109.47429 * 94.99484 * 23 21 19 25 25 H 1.48501 * 109.47165 * 214.99673 * 23 21 19 26 26 H 1.48498 * 109.47083 * 334.99580 * 23 21 19 27 27 C 1.38299 * 119.95035 * 325.91648 * 14 13 11 28 28 H 1.08998 * 109.47095 * 59.99939 * 1 2 3 29 29 H 1.08999 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47034 * 299.99772 * 1 2 3 31 31 H 1.08998 * 109.47060 * 120.00617 * 2 1 3 32 32 H 1.09006 * 109.46915 * 240.00706 * 2 1 3 33 33 H 1.08998 * 109.47828 * 300.00147 * 3 2 1 34 34 H 1.09006 * 109.46820 * 60.00647 * 3 2 1 35 35 H 1.08995 * 109.46958 * 299.99897 * 6 4 3 36 36 H 1.08997 * 109.46878 * 60.00286 * 6 4 3 37 37 H 1.09005 * 109.46611 * 179.97438 * 6 4 3 38 38 H 1.09003 * 109.46853 * 95.19159 * 8 7 4 39 39 H 1.08999 * 109.46987 * 215.19115 * 8 7 4 40 40 H 1.08997 * 109.47078 * 335.19026 * 8 7 4 41 41 H 0.96996 * 119.99550 * 354.41304 * 13 11 9 42 42 H 1.07996 * 119.79221 * 359.95663 * 15 14 13 43 43 H 1.07997 * 119.83879 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.05117 * 179.97438 * 17 16 15 45 45 H 0.96994 * 120.00054 * 179.97438 * 22 21 19 46 46 H 1.07993 * 120.16790 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0799 2.8796 0.1265 7 7 4.0589 0.8587 -1.2509 8 6 3.7054 1.4732 -2.5330 9 6 4.8337 -0.2437 -1.2228 10 8 5.0509 -0.8060 -0.1695 11 6 5.4249 -0.7734 -2.4879 12 8 5.3054 -0.1488 -3.5218 13 7 6.0912 -1.9449 -2.4816 14 6 6.5432 -2.4982 -3.6826 15 6 7.7344 -3.2204 -3.7111 16 6 8.1911 -3.7733 -4.8957 17 6 7.4719 -3.6156 -6.0593 18 6 6.2668 -2.8885 -6.0461 19 6 5.5233 -2.7220 -7.2374 20 1 4.9322 -1.8303 -7.3848 21 6 5.5535 -3.7126 -8.2253 22 7 6.1337 -4.8601 -7.9835 23 14 4.7654 -3.3968 -9.8891 24 1 5.7970 -2.9139 -10.8419 25 1 4.1691 -4.6566 -10.4016 26 1 3.7034 -2.3687 -9.7466 27 6 5.8045 -2.3329 -4.8401 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9565 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.7169 3.4689 -0.7155 36 1 3.7162 3.3139 1.0577 37 1 5.1699 2.8795 0.1274 38 1 4.5022 2.1489 -2.8439 39 1 3.5748 0.6951 -3.2850 40 1 2.7764 2.0326 -2.4239 41 1 6.2571 -2.4040 -1.6434 42 1 8.3054 -3.3497 -2.8036 43 1 9.1154 -4.3317 -4.9069 44 1 7.8324 -4.0483 -6.9808 45 1 6.1543 -5.5468 -8.6681 46 1 4.8791 -1.7767 -4.8185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453608689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:18 Heat of formation + Delta-G solvation = -52.622944 kcal Electronic energy + Delta-G solvation = -26749.241006 eV Core-core repulsion = 23024.613473 eV Total energy + Delta-G solvation = -3724.627533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83275 -39.02937 -37.20289 -37.08523 -34.78389 -33.98770 -33.00234 -31.49693 -29.85916 -28.51633 -27.04954 -26.91408 -25.36546 -24.80510 -22.14722 -21.45057 -20.93675 -20.07550 -19.31193 -18.01626 -17.24097 -17.09669 -16.11593 -15.64269 -15.46675 -14.97125 -14.82419 -14.64531 -14.38436 -14.10351 -13.79192 -13.37001 -13.11783 -13.01059 -12.93545 -12.86717 -12.50649 -12.41030 -12.19650 -12.16774 -11.72938 -11.63361 -11.29757 -11.19920 -11.16060 -11.04615 -10.95434 -10.92572 -10.74572 -10.46722 -10.07856 -9.64596 -9.40208 -9.12123 -8.92870 -8.81172 -7.45686 -6.98846 -6.67148 -4.38950 1.55082 2.44316 2.75412 2.90865 3.09631 3.13584 3.18634 3.54416 3.70984 3.96910 4.39140 4.65798 4.67687 4.74122 4.77949 5.05506 5.08793 5.11758 5.25885 5.34888 5.47936 5.58197 5.61483 5.64053 5.65207 5.75387 5.86129 5.94853 5.96283 6.05465 6.16905 6.19456 6.32515 6.35111 6.62784 6.84307 6.95768 7.01342 7.06102 7.23719 7.40072 7.64023 7.77438 7.88907 8.05384 8.07806 8.17480 8.46273 8.64395 8.91036 8.93660 10.26276 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.003181 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.709873 B = 8800.071296 C = 9728.507257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.129 4.129 4 C 0.130 3.870 5 H 0.103 0.897 6 C -0.161 4.161 7 N -0.581 5.581 8 C 0.075 3.925 9 C 0.511 3.489 10 O -0.527 6.527 11 C 0.495 3.505 12 O -0.494 6.494 13 N -0.634 5.634 14 C 0.142 3.858 15 C -0.248 4.248 16 C -0.095 4.095 17 C -0.159 4.159 18 C 0.119 3.881 19 C -0.461 4.461 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.805 5.805 23 Si 0.912 3.088 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.202 4.202 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.122 0.878 45 H 0.279 0.721 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 10.577 12.786 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.167 4.167 4 C 0.028 3.972 5 H 0.121 0.879 6 C -0.219 4.219 7 N -0.315 5.315 8 C -0.067 4.067 9 C 0.294 3.706 10 O -0.404 6.404 11 C 0.277 3.723 12 O -0.368 6.368 13 N -0.279 5.279 14 C 0.050 3.950 15 C -0.269 4.269 16 C -0.114 4.114 17 C -0.179 4.179 18 C 0.117 3.883 19 C -0.491 4.491 20 H 0.096 0.904 21 C -0.143 4.143 22 N -0.432 5.432 23 Si 0.737 3.263 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.224 4.224 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.090 0.910 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.859 10.523 12.505 17.724 hybrid contribution -0.251 -0.182 -0.346 0.464 sum -7.110 10.341 12.159 17.474 Atomic orbital electron populations 1.21757 0.95793 1.01713 1.01510 1.21494 0.95706 0.96414 1.02578 1.22001 0.94118 0.97792 1.02752 1.21267 0.94049 0.94814 0.87107 0.87926 1.22131 1.01879 0.95432 1.02421 1.47730 1.48664 1.26777 1.08361 1.22159 1.00229 1.00170 0.84121 1.20331 0.79647 0.81113 0.89557 1.90712 1.59897 1.57702 1.32087 1.19957 0.81093 0.82341 0.88951 1.90778 1.56373 1.56838 1.32840 1.43155 1.53664 1.20834 1.10281 1.17456 0.94576 0.98492 0.84459 1.20118 0.97728 1.11014 0.98063 1.20510 0.98556 0.99400 0.92952 1.21446 0.95277 1.03854 0.97287 1.17491 0.90521 0.88907 0.91431 1.19557 1.25435 1.04259 0.99859 0.90405 1.25872 0.94186 0.94244 1.00018 1.69782 1.35245 1.03867 1.34300 0.86233 0.79917 0.78755 0.81394 1.19455 1.20321 1.18636 1.21033 1.00411 1.09503 0.91425 0.92803 0.92732 0.92913 0.91846 0.91977 0.91260 0.90656 0.91993 0.91249 0.92110 0.91866 0.88571 0.91613 0.75439 0.88938 0.88752 0.86036 0.91033 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.23 5.82 -26.73 -0.16 -1.38 16 3 C -0.13 -1.08 4.64 -26.73 -0.12 -1.20 16 4 C 0.13 1.31 2.63 -67.93 -0.18 1.13 16 5 H 0.10 1.17 6.91 -51.93 -0.36 0.81 16 6 C -0.16 -1.30 9.19 37.16 0.34 -0.96 16 7 N -0.58 -7.34 2.21 -174.48 -0.39 -7.72 16 8 C 0.08 0.89 8.27 59.85 0.49 1.38 16 9 C 0.51 7.99 7.72 -11.63 -0.09 7.90 16 10 O -0.53 -8.83 15.83 5.49 0.09 -8.75 16 11 C 0.50 9.06 7.42 -11.63 -0.09 8.97 16 12 O -0.49 -9.98 11.13 5.47 0.06 -9.92 16 13 N -0.63 -12.01 5.32 -10.34 -0.06 -12.07 16 14 C 0.14 3.19 6.25 -83.82 -0.52 2.67 16 15 C -0.25 -5.45 9.97 -39.09 -0.39 -5.83 16 16 C -0.10 -2.19 10.02 -39.69 -0.40 -2.59 16 17 C -0.16 -4.10 8.64 -38.83 -0.34 -4.44 16 18 C 0.12 3.21 5.53 -106.85 -0.59 2.62 16 19 C -0.46 -12.37 9.06 -37.74 -0.34 -12.71 16 20 H 0.08 2.04 7.86 -52.49 -0.41 1.63 16 21 C 0.07 1.84 5.28 -17.34 -0.09 1.75 16 22 N -0.81 -20.84 10.86 55.55 0.60 -20.24 16 23 Si 0.91 18.92 29.57 -169.99 -5.03 13.89 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.20 -5.10 8.39 -38.67 -0.32 -5.42 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 39 H 0.10 1.37 5.94 -51.93 -0.31 1.06 16 40 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 41 H 0.41 6.80 8.30 -40.82 -0.34 6.46 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.12 3.23 6.29 -52.49 -0.33 2.90 16 45 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 46 H 0.11 2.69 6.46 -52.49 -0.34 2.35 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -29.09 374.54 -8.41 -37.51 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.92 Total: 10.66 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.43 Total: -9.01 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.16 Total: -40.03 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.15 Total: -18.66 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.09 -8.41 -37.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453608689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.116 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds