Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 C 1.52996 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47471 * 305.00366 * 4 3 2 6 6 C 1.53007 * 109.47063 * 185.00194 * 4 3 2 7 7 C 1.53006 * 109.46956 * 175.00188 * 6 4 3 8 8 N 1.46496 * 109.47081 * 65.00367 * 4 3 2 9 9 C 1.34777 * 120.00128 * 205.00248 * 8 4 3 10 10 O 1.21358 * 119.99966 * 359.97438 * 9 8 4 11 11 C 1.49353 * 120.00055 * 179.97438 * 9 8 4 12 12 O 1.21379 * 120.00137 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00055 * 179.97438 * 11 9 8 14 14 C 1.39743 * 120.00094 * 174.89350 * 13 11 9 15 15 C 1.39349 * 119.95293 * 145.76019 * 14 13 11 16 16 C 1.38467 * 120.42105 * 179.97438 * 15 14 13 17 17 C 1.37696 * 120.33217 * 359.97438 * 16 15 14 18 18 C 1.40753 * 119.89369 * 0.02562 * 17 16 15 19 19 C 1.41402 * 120.20530 * 180.02562 * 18 17 16 20 20 H 1.08010 * 119.99987 * 205.17864 * 19 18 17 21 21 C 1.39931 * 120.00564 * 25.17807 * 19 18 17 22 22 N 1.30829 * 119.99645 * 16.78528 * 21 19 18 23 23 Si 1.86797 * 120.00195 * 196.79351 * 21 19 18 24 24 H 1.48499 * 109.47427 * 59.99670 * 23 21 19 25 25 H 1.48504 * 109.47196 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47185 * 299.99651 * 23 21 19 27 27 C 1.38297 * 119.95273 * 325.48583 * 14 13 11 28 28 H 1.09002 * 109.47442 * 59.99884 * 1 2 3 29 29 H 1.09007 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 299.99614 * 1 2 3 31 31 H 1.09003 * 109.46737 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47295 * 120.00635 * 2 1 3 33 33 H 1.09003 * 109.47047 * 60.00378 * 3 2 1 34 34 H 1.09000 * 109.47440 * 300.00547 * 3 2 1 35 35 H 1.08992 * 109.46881 * 55.00467 * 6 4 3 36 36 H 1.09000 * 109.46975 * 295.00004 * 6 4 3 37 37 H 1.08998 * 109.46947 * 300.00236 * 7 6 4 38 38 H 1.08995 * 109.47016 * 180.02562 * 7 6 4 39 39 H 1.08996 * 109.46934 * 59.99673 * 7 6 4 40 40 H 0.97000 * 120.00217 * 25.00169 * 8 4 3 41 41 H 0.96994 * 119.99854 * 354.88503 * 13 11 9 42 42 H 1.07998 * 119.78988 * 359.95985 * 15 14 13 43 43 H 1.07998 * 119.83551 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.05393 * 179.97438 * 17 16 15 45 45 H 0.97004 * 120.00171 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.16668 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0799 2.8795 0.1264 7 6 5.6048 2.8704 0.2524 8 7 4.0588 0.8586 -1.2509 9 6 5.2808 0.2920 -1.2981 10 8 5.9763 0.2658 -0.3040 11 6 5.7789 -0.3037 -2.5739 12 8 5.0831 -0.2780 -3.5681 13 7 7.0011 -0.8699 -2.6213 14 6 7.4249 -1.5211 -3.7828 15 6 8.7673 -1.4780 -4.1541 16 6 9.1980 -2.1203 -5.3027 17 6 8.3037 -2.8096 -6.0909 18 6 6.9446 -2.8619 -5.7286 19 6 6.0207 -3.5683 -6.5329 20 1 4.9751 -3.2979 -6.5186 21 6 6.4609 -4.6175 -7.3474 22 7 7.6310 -5.1632 -7.1357 23 14 5.3782 -5.2388 -8.7370 24 1 5.1124 -4.1318 -9.6904 25 1 6.0687 -6.3464 -9.4452 26 1 4.0928 -5.7319 -8.1803 27 6 6.5125 -2.2122 -4.5590 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6450 3.3431 1.0118 36 1 3.7919 3.4460 -0.7591 37 1 5.8927 2.3038 1.1379 38 1 5.9680 3.8941 0.3425 39 1 6.0397 2.4066 -0.6329 40 1 3.5030 0.8798 -2.0456 41 1 7.5865 -0.8252 -1.8492 42 1 9.4763 -0.9401 -3.5423 43 1 10.2407 -2.0811 -5.5814 44 1 8.6445 -3.3085 -6.9861 45 1 7.9364 -5.8903 -7.7005 46 1 5.4726 -2.2497 -4.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453638436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = -71.020450 kcal Electronic energy + Delta-G solvation = -26351.716864 eV Core-core repulsion = 22626.291556 eV Total energy + Delta-G solvation = -3725.425309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73500 -39.07630 -37.22046 -36.94712 -34.67187 -33.86761 -33.06673 -32.39527 -29.87289 -28.98874 -28.42633 -25.39234 -24.97890 -24.08331 -21.59959 -21.35924 -20.95502 -20.73524 -19.77326 -18.37050 -17.46254 -16.91806 -16.07874 -15.66939 -15.49324 -15.01492 -14.93560 -14.67995 -14.40806 -14.31417 -13.96405 -13.49505 -13.31409 -12.96258 -12.89230 -12.66382 -12.62191 -12.22706 -12.03996 -11.75049 -11.66959 -11.38410 -11.35979 -11.27585 -11.13242 -10.98518 -10.94542 -10.87464 -10.85677 -10.51653 -10.10439 -9.70254 -9.43726 -9.22136 -9.10371 -8.99523 -7.49867 -6.99978 -6.74714 -4.37201 1.55992 2.52926 2.77163 2.93671 3.07510 3.10770 3.20713 3.58183 3.89294 3.95115 4.29423 4.61689 4.63285 4.69491 4.73915 4.95161 5.00980 5.12927 5.22867 5.37435 5.45579 5.51589 5.60332 5.66777 5.74625 5.82777 5.84233 5.92154 5.96550 6.06359 6.20763 6.23628 6.31876 6.35548 6.60672 6.84977 6.97708 7.01243 7.13603 7.22955 7.45425 7.64764 7.84373 7.90475 8.04121 8.09219 8.17093 8.45680 8.63667 8.89395 8.93707 10.19009 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.003073 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.479851 B = 9108.253230 C =10702.770463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.127 4.127 4 C 0.142 3.858 5 H 0.092 0.908 6 C -0.135 4.135 7 C -0.148 4.148 8 N -0.696 5.696 9 C 0.512 3.488 10 O -0.519 6.519 11 C 0.494 3.506 12 O -0.500 6.500 13 N -0.634 5.634 14 C 0.145 3.855 15 C -0.255 4.255 16 C -0.092 4.092 17 C -0.168 4.168 18 C 0.120 3.880 19 C -0.459 4.459 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.794 5.794 23 Si 0.910 3.090 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.265 1.265 27 C -0.209 4.209 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.281 0.719 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 11.076 12.462 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.165 4.165 4 C 0.038 3.962 5 H 0.110 0.890 6 C -0.173 4.173 7 C -0.205 4.205 8 N -0.350 5.350 9 C 0.293 3.707 10 O -0.395 6.395 11 C 0.275 3.725 12 O -0.375 6.375 13 N -0.279 5.279 14 C 0.054 3.946 15 C -0.277 4.277 16 C -0.111 4.111 17 C -0.188 4.188 18 C 0.117 3.883 19 C -0.488 4.488 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.230 4.230 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.246 0.754 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.380 10.875 12.420 18.513 hybrid contribution -0.341 -0.328 -0.568 0.739 sum -8.721 10.548 11.852 18.105 Atomic orbital electron populations 1.21764 0.95656 1.01834 1.01668 1.21564 0.95986 0.96313 1.02765 1.21934 0.93374 0.97899 1.03296 1.21218 0.93646 0.94368 0.87015 0.88977 1.21980 0.97254 0.95849 1.02236 1.21824 0.94876 1.00778 1.03009 1.45831 1.17078 1.57728 1.14394 1.20231 0.82511 0.78912 0.89013 1.90742 1.56003 1.56770 1.36005 1.20038 0.83383 0.80515 0.88566 1.90813 1.55693 1.55737 1.35220 1.43138 1.15749 1.52474 1.16501 1.17444 0.93863 0.96023 0.87317 1.20070 0.93278 1.12106 1.02205 1.20475 0.97723 0.98010 0.94850 1.21388 0.93750 1.02604 1.01072 1.17463 0.92555 0.88934 0.89335 1.19548 0.95907 1.13095 1.20273 0.90338 1.25904 0.95371 0.95561 0.97332 1.69814 1.18920 1.18956 1.34261 0.86347 0.80610 0.78702 0.80950 1.18774 1.20351 1.18994 1.20962 0.98278 1.06006 0.97749 0.92655 0.92639 0.92865 0.91475 0.91845 0.90190 0.91065 0.90973 0.91664 0.92042 0.93457 0.92550 0.75140 0.75405 0.89003 0.88818 0.86191 0.90807 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.04 5.82 -26.74 -0.16 -1.20 16 3 C -0.13 -0.90 4.75 -26.74 -0.13 -1.03 16 4 C 0.14 1.31 2.26 -67.93 -0.15 1.15 16 5 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 6 C -0.13 -1.16 5.61 -26.72 -0.15 -1.31 16 7 C -0.15 -1.58 8.51 37.16 0.32 -1.27 16 8 N -0.70 -8.05 4.48 -54.27 -0.24 -8.30 16 9 C 0.51 7.55 6.46 -11.63 -0.08 7.48 16 10 O -0.52 -8.09 13.62 5.49 0.07 -8.02 16 11 C 0.49 8.97 7.61 -11.63 -0.09 8.88 16 12 O -0.50 -10.41 14.23 5.47 0.08 -10.33 16 13 N -0.63 -11.95 5.32 -10.34 -0.05 -12.00 16 14 C 0.14 3.30 6.25 -83.82 -0.52 2.77 16 15 C -0.26 -5.65 9.97 -39.08 -0.39 -6.04 16 16 C -0.09 -2.12 10.01 -39.70 -0.40 -2.52 16 17 C -0.17 -4.38 8.69 -38.83 -0.34 -4.71 16 18 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 19 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 20 H 0.08 2.07 7.90 -52.48 -0.41 1.66 16 21 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 22 N -0.79 -20.47 10.94 55.55 0.61 -19.86 16 23 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.21 -5.33 8.39 -38.67 -0.32 -5.66 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 40 H 0.41 4.56 8.07 -40.82 -0.33 4.23 16 41 H 0.41 6.70 8.30 -40.82 -0.34 6.36 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.12 3.19 6.17 -52.49 -0.32 2.86 16 45 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 46 H 0.11 2.74 6.48 -52.49 -0.34 2.40 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -29.29 376.94 -8.98 -38.27 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.03 Total: 13.19 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.06 Total: -12.42 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.31 Total: -40.16 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.15 Total: -18.35 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.29 -8.98 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453638436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.754 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds