Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 C 1.52996 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47471 * 305.00366 * 4 3 2 6 6 C 1.53007 * 109.47063 * 185.00194 * 4 3 2 7 7 C 1.53006 * 109.46956 * 175.00188 * 6 4 3 8 8 N 1.46496 * 109.47081 * 65.00367 * 4 3 2 9 9 C 1.34777 * 120.00128 * 205.00248 * 8 4 3 10 10 O 1.21358 * 119.99966 * 359.97438 * 9 8 4 11 11 C 1.49353 * 120.00055 * 179.97438 * 9 8 4 12 12 O 1.21379 * 120.00137 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00055 * 179.97438 * 11 9 8 14 14 C 1.39743 * 120.00094 * 174.89350 * 13 11 9 15 15 C 1.39349 * 119.95293 * 145.76019 * 14 13 11 16 16 C 1.38467 * 120.42105 * 179.97438 * 15 14 13 17 17 C 1.37696 * 120.33217 * 359.97438 * 16 15 14 18 18 C 1.40753 * 119.89369 * 0.02562 * 17 16 15 19 19 C 1.41402 * 120.20530 * 180.02562 * 18 17 16 20 20 H 1.08010 * 119.99987 * 205.17864 * 19 18 17 21 21 C 1.39931 * 120.00564 * 25.17807 * 19 18 17 22 22 N 1.30829 * 119.99645 * 16.78528 * 21 19 18 23 23 Si 1.86797 * 120.00195 * 196.79351 * 21 19 18 24 24 H 1.48499 * 109.47427 * 59.99670 * 23 21 19 25 25 H 1.48504 * 109.47196 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47185 * 299.99651 * 23 21 19 27 27 C 1.38297 * 119.95273 * 325.48583 * 14 13 11 28 28 H 1.09002 * 109.47442 * 59.99884 * 1 2 3 29 29 H 1.09007 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 299.99614 * 1 2 3 31 31 H 1.09003 * 109.46737 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.47295 * 120.00635 * 2 1 3 33 33 H 1.09003 * 109.47047 * 60.00378 * 3 2 1 34 34 H 1.09000 * 109.47440 * 300.00547 * 3 2 1 35 35 H 1.08992 * 109.46881 * 55.00467 * 6 4 3 36 36 H 1.09000 * 109.46975 * 295.00004 * 6 4 3 37 37 H 1.08998 * 109.46947 * 300.00236 * 7 6 4 38 38 H 1.08995 * 109.47016 * 180.02562 * 7 6 4 39 39 H 1.08996 * 109.46934 * 59.99673 * 7 6 4 40 40 H 0.97000 * 120.00217 * 25.00169 * 8 4 3 41 41 H 0.96994 * 119.99854 * 354.88503 * 13 11 9 42 42 H 1.07998 * 119.78988 * 359.95985 * 15 14 13 43 43 H 1.07998 * 119.83551 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.05393 * 179.97438 * 17 16 15 45 45 H 0.97004 * 120.00171 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.16668 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0799 2.8795 0.1264 7 6 5.6048 2.8704 0.2524 8 7 4.0588 0.8586 -1.2509 9 6 5.2808 0.2920 -1.2981 10 8 5.9763 0.2658 -0.3040 11 6 5.7789 -0.3037 -2.5739 12 8 5.0831 -0.2780 -3.5681 13 7 7.0011 -0.8699 -2.6213 14 6 7.4249 -1.5211 -3.7828 15 6 8.7673 -1.4780 -4.1541 16 6 9.1980 -2.1203 -5.3027 17 6 8.3037 -2.8096 -6.0909 18 6 6.9446 -2.8619 -5.7286 19 6 6.0207 -3.5683 -6.5329 20 1 4.9751 -3.2979 -6.5186 21 6 6.4609 -4.6175 -7.3474 22 7 7.6310 -5.1632 -7.1357 23 14 5.3782 -5.2388 -8.7370 24 1 5.1124 -4.1318 -9.6904 25 1 6.0687 -6.3464 -9.4452 26 1 4.0928 -5.7319 -8.1803 27 6 6.5125 -2.2122 -4.5590 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.6450 3.3431 1.0118 36 1 3.7919 3.4460 -0.7591 37 1 5.8927 2.3038 1.1379 38 1 5.9680 3.8941 0.3425 39 1 6.0397 2.4066 -0.6329 40 1 3.5030 0.8798 -2.0456 41 1 7.5865 -0.8252 -1.8492 42 1 9.4763 -0.9401 -3.5423 43 1 10.2407 -2.0811 -5.5814 44 1 8.6445 -3.3085 -6.9861 45 1 7.9364 -5.8903 -7.7005 46 1 5.4726 -2.2497 -4.2701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453638436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -88.180641 kcal Electronic energy + Delta-G solvation = -26352.460986 eV Core-core repulsion = 22626.291556 eV Total energy + Delta-G solvation = -3726.169431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05987 -40.46145 -38.93258 -37.95448 -36.36766 -34.96152 -34.53951 -33.35343 -31.79694 -30.32570 -29.61725 -27.30976 -26.22721 -24.96421 -23.16348 -22.71440 -22.00481 -21.71888 -21.26506 -19.90562 -19.11471 -18.07368 -17.45845 -17.25509 -16.84490 -16.56410 -16.48446 -15.81345 -15.65023 -15.28907 -15.03658 -14.96706 -14.68175 -14.30136 -14.12993 -13.99256 -13.57559 -13.32691 -13.31126 -13.06429 -13.02212 -12.86667 -12.71621 -12.66417 -12.40371 -12.20285 -12.02680 -11.90661 -11.71621 -11.61476 -11.54915 -11.51634 -11.17854 -10.93061 -10.58294 -10.17528 -9.43816 -8.84976 -8.63748 -6.38789 0.16025 0.94697 1.05274 1.33814 1.37487 1.48616 1.53342 2.14328 2.20832 2.64951 2.71980 3.37945 3.61628 3.70143 3.95114 4.05296 4.25130 4.32940 4.42651 4.43843 4.56923 4.57807 4.70770 4.80471 4.86521 4.90422 4.96758 5.01714 5.04977 5.07015 5.07772 5.11330 5.15557 5.25355 5.26819 5.28275 5.39603 5.45146 5.47587 5.60466 5.76768 5.99981 6.03668 6.08654 6.27020 6.40265 6.62914 6.77909 6.89025 6.95161 7.01358 8.31953 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.003073 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.479851 B = 9108.253230 C =10702.770463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.118 4.118 4 C 0.139 3.861 5 H 0.083 0.917 6 C -0.130 4.130 7 C -0.148 4.148 8 N -0.681 5.681 9 C 0.522 3.478 10 O -0.527 6.527 11 C 0.492 3.508 12 O -0.530 6.530 13 N -0.630 5.630 14 C 0.151 3.849 15 C -0.248 4.248 16 C -0.089 4.089 17 C -0.194 4.194 18 C 0.092 3.908 19 C -0.501 4.501 20 H 0.068 0.932 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.262 1.262 27 C -0.233 4.233 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.030 0.970 40 H 0.415 0.585 41 H 0.424 0.576 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.290 0.710 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 12.452 13.551 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.156 4.156 4 C 0.036 3.964 5 H 0.101 0.899 6 C -0.168 4.168 7 C -0.205 4.205 8 N -0.334 5.334 9 C 0.301 3.699 10 O -0.404 6.404 11 C 0.274 3.726 12 O -0.406 6.406 13 N -0.277 5.277 14 C 0.058 3.942 15 C -0.269 4.269 16 C -0.108 4.108 17 C -0.214 4.214 18 C 0.089 3.911 19 C -0.530 4.530 20 H 0.086 0.914 21 C -0.177 4.177 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.186 1.186 26 H -0.186 1.186 27 C -0.254 4.254 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.252 0.748 41 H 0.262 0.738 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.921 12.279 13.555 20.350 hybrid contribution -0.144 -0.666 -0.775 1.032 sum -9.065 11.613 12.780 19.503 Atomic orbital electron populations 1.21748 0.94762 1.01767 1.02462 1.21565 0.96800 0.96901 1.01573 1.21912 0.91348 0.97397 1.04919 1.21458 0.95159 0.94576 0.85161 0.89898 1.21977 0.95767 0.95255 1.03808 1.21804 0.96418 1.01013 1.01269 1.45900 1.15670 1.56249 1.15595 1.19545 0.83544 0.79483 0.87285 1.90746 1.56531 1.57582 1.35581 1.20739 0.82631 0.79658 0.89574 1.90798 1.56298 1.56684 1.36780 1.43063 1.16520 1.52223 1.15856 1.17518 0.93897 0.94931 0.87834 1.20479 0.93512 1.11050 1.01884 1.20834 0.98849 0.96608 0.94487 1.21371 0.93939 1.04351 1.01721 1.17797 0.93474 0.89714 0.90124 1.19746 0.95661 1.14932 1.22663 0.91404 1.26713 0.96852 0.95015 0.99126 1.69848 1.20278 1.19368 1.35166 0.85260 0.78688 0.78382 0.77420 1.18559 1.18626 1.18623 1.20935 0.98174 1.07768 0.98562 0.92409 0.93228 0.91479 0.93549 0.92241 0.87752 0.90138 0.88290 0.91034 0.92977 0.92320 0.95081 0.74774 0.73772 0.85265 0.85675 0.87498 0.89911 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.13 -1.95 5.82 30.59 0.18 -1.78 16 3 C -0.12 -1.37 4.75 30.59 0.15 -1.23 16 4 C 0.14 2.31 2.26 44.99 0.10 2.41 16 5 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 6 C -0.13 -1.89 5.61 30.60 0.17 -1.72 16 7 C -0.15 -2.93 8.51 71.98 0.61 -2.31 16 8 N -0.68 -15.22 4.48 -443.96 -1.99 -17.21 16 9 C 0.52 15.20 6.46 87.24 0.56 15.77 16 10 O -0.53 -16.08 13.62 -3.27 -0.04 -16.12 16 11 C 0.49 18.02 7.61 87.24 0.66 18.68 16 12 O -0.53 -22.69 14.23 -3.34 -0.05 -22.74 16 13 N -0.63 -23.63 5.32 -304.98 -1.62 -25.25 16 14 C 0.15 6.89 6.25 38.16 0.24 7.13 16 15 C -0.25 -10.62 9.97 22.59 0.23 -10.40 16 16 C -0.09 -4.06 10.01 22.20 0.22 -3.84 16 17 C -0.19 -10.35 8.69 22.76 0.20 -10.15 16 18 C 0.09 5.20 5.57 -21.31 -0.12 5.08 16 19 C -0.50 -28.42 9.05 23.46 0.21 -28.20 16 20 H 0.07 3.82 7.90 -2.91 -0.02 3.80 16 21 C 0.04 1.98 5.16 85.25 0.44 2.42 16 22 N -0.82 -43.30 10.94 21.82 0.24 -43.06 16 23 Si 0.98 39.20 29.59 68.60 2.03 41.23 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 26 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 27 C -0.23 -12.40 8.39 22.86 0.19 -12.20 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.88 7.75 -2.39 -0.02 0.86 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.11 7.85 -2.39 -0.02 1.10 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.03 0.76 5.64 -2.39 -0.01 0.75 16 40 H 0.42 8.97 8.07 -92.71 -0.75 8.22 16 41 H 0.42 13.41 8.30 -92.71 -0.77 12.64 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 44 H 0.11 5.88 6.17 -2.91 -0.02 5.87 16 45 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 46 H 0.09 4.94 6.48 -2.91 -0.02 4.92 16 Total: -1.00 -66.09 376.94 2.81 -63.28 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -0.52 Total: 41.42 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.76 Total: -21.54 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -3.37 Total: -85.52 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.09 Total: -38.86 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -66.09 2.81 -63.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453638436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.897 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds