Wall clock time and date at job start Tue Mar 31 2020 13:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47128 * 119.99550 * 2 1 3 5 5 O 1.21293 * 120.00419 * 269.72894 * 4 2 1 6 6 C 1.46836 * 119.99630 * 90.00179 * 4 2 1 7 7 C 1.40065 * 120.10134 * 359.72533 * 6 4 2 8 8 C 1.36604 * 119.89494 * 179.78557 * 7 6 4 9 9 C 1.39213 * 120.10247 * 0.49185 * 8 7 6 10 10 N 1.39296 * 119.90076 * 179.71792 * 9 8 7 11 11 C 1.34778 * 120.00191 * 213.60047 * 10 9 8 12 12 O 1.21579 * 120.00041 * 5.32188 * 11 10 9 13 13 N 1.34781 * 119.99906 * 185.31884 * 11 10 9 14 14 C 1.46505 * 119.99760 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46932 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47071 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47164 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99446 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99826 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99815 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47300 * 120.00186 * 21 19 17 24 24 H 1.48501 * 109.46965 * 240.00120 * 21 19 17 25 25 C 1.39228 * 120.20534 * 359.74099 * 9 8 7 26 26 C 1.36605 * 120.09970 * 0.02562 * 25 9 8 27 27 H 1.09003 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47761 * 299.99907 * 1 2 3 29 29 H 1.09004 * 109.47198 * 60.00510 * 1 2 3 30 30 H 1.08994 * 109.47761 * 240.00093 * 2 1 3 31 31 H 1.08993 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46750 * 300.00372 * 3 2 1 33 33 H 1.09004 * 109.46562 * 59.99355 * 3 2 1 34 34 H 1.08002 * 120.04849 * 0.02562 * 7 6 4 35 35 H 1.08001 * 119.94456 * 180.23266 * 8 7 6 36 36 H 0.96997 * 120.00282 * 33.59655 * 10 9 8 37 37 H 0.96995 * 120.00336 * 359.97438 * 13 11 10 38 38 H 1.08991 * 109.47116 * 300.00182 * 14 13 11 39 39 H 1.09000 * 109.46922 * 60.00667 * 14 13 11 40 40 H 1.09005 * 109.46958 * 300.00430 * 15 14 13 41 41 H 1.08998 * 109.47221 * 59.99869 * 15 14 13 42 42 H 1.08991 * 109.46925 * 300.00065 * 16 15 14 43 43 H 1.09000 * 109.46974 * 60.00465 * 16 15 14 44 44 H 0.97010 * 120.00173 * 180.02562 * 20 19 17 45 45 H 1.07995 * 119.95020 * 180.02562 * 25 9 8 46 46 H 1.07992 * 120.05180 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2392 -0.0857 2.2495 6 6 2.2770 -2.1577 1.1942 7 6 2.0388 -2.8811 0.0187 8 6 2.2721 -4.2267 -0.0117 9 6 2.7361 -4.8808 1.1262 10 7 2.9670 -6.2541 1.0922 11 6 2.7509 -7.0013 2.1929 12 8 2.2633 -6.4952 3.1850 13 7 3.0751 -8.3095 2.1937 14 6 2.8407 -9.1215 3.3903 15 6 3.2937 -10.5592 3.1278 16 6 3.0482 -11.4074 4.3773 17 6 3.4938 -12.8236 4.1186 18 1 3.9108 -13.0916 3.1590 19 6 3.3702 -13.7767 5.1071 20 7 2.8629 -13.4500 6.2756 21 14 3.9232 -15.5319 4.7867 22 1 4.4534 -15.6391 3.4037 23 1 4.9868 -15.9005 5.7551 24 1 2.7682 -16.4517 4.9461 25 6 2.9697 -4.1667 2.2984 26 6 2.7438 -2.8200 2.3367 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6750 -2.3751 -0.8634 35 1 2.0923 -4.7847 -0.9188 36 1 3.2833 -6.6727 0.2764 37 1 3.4637 -8.7134 1.4020 38 1 3.4066 -8.7094 4.2257 39 1 1.7779 -9.1136 3.6323 40 1 2.7280 -10.9715 2.2923 41 1 4.3564 -10.5668 2.8860 42 1 3.6135 -10.9951 5.2130 43 1 1.9853 -11.3997 4.6186 44 1 2.7762 -14.1205 6.9713 45 1 3.3300 -4.6782 3.1786 46 1 2.9248 -2.2670 3.2464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455819444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:14 Heat of formation + Delta-G solvation = -62.006349 kcal Electronic energy + Delta-G solvation = -24863.169511 eV Core-core repulsion = 21138.135083 eV Total energy + Delta-G solvation = -3725.034428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99472 -40.11882 -38.44559 -35.73607 -34.99004 -34.78988 -33.40586 -31.45750 -31.37858 -30.02500 -27.58939 -26.83770 -25.06136 -23.69646 -22.95115 -22.09967 -21.07817 -20.52287 -19.51600 -18.49759 -18.01302 -17.20948 -16.37187 -16.06600 -15.73505 -15.24237 -15.17247 -14.81023 -14.58853 -14.44926 -14.28142 -14.09615 -14.05338 -13.61174 -13.19347 -12.95593 -12.84456 -12.69940 -12.44513 -12.34427 -11.88827 -11.86102 -11.62296 -11.56233 -11.28050 -10.96743 -10.81578 -10.62350 -10.59859 -10.30635 -9.94021 -9.81480 -9.52171 -9.33273 -9.16331 -8.99088 -8.41540 -8.32975 -6.05767 -4.09175 0.36363 1.16572 2.09947 2.46711 3.03787 3.27202 3.34932 3.37973 3.60517 3.67100 4.05997 4.37715 4.40990 4.41762 4.59976 4.61510 4.78379 5.01918 5.03999 5.18373 5.20953 5.28712 5.30261 5.34192 5.39010 5.54149 5.55615 5.68480 5.70074 5.75715 5.79955 5.85386 5.98935 6.07236 6.13545 6.24635 6.34830 6.52136 6.61800 6.70790 6.83709 6.93181 7.28853 7.58863 7.70527 7.81069 7.92495 8.32676 8.41677 8.97588 9.55405 11.05454 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047056 B = 0.001650 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.897000 B =16969.106908 C =17247.490620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C -0.141 4.141 4 C 0.404 3.596 5 O -0.456 6.456 6 C -0.202 4.202 7 C -0.049 4.049 8 C -0.168 4.168 9 C 0.213 3.787 10 N -0.689 5.689 11 C 0.697 3.303 12 O -0.569 6.569 13 N -0.733 5.733 14 C 0.132 3.868 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.137 4.137 26 C -0.035 4.035 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.144 0.856 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 25.453 -18.692 31.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.198 4.198 4 C 0.282 3.718 5 O -0.332 6.332 6 C -0.204 4.204 7 C -0.068 4.068 8 C -0.189 4.189 9 C 0.116 3.884 10 N -0.336 5.336 11 C 0.398 3.602 12 O -0.445 6.445 13 N -0.386 5.386 14 C 0.010 3.990 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.158 4.158 26 C -0.054 4.054 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.244 0.756 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.162 0.838 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.669 26.041 -16.998 31.142 hybrid contribution 0.593 -1.673 -0.961 2.018 sum -1.076 24.368 -17.958 30.290 Atomic orbital electron populations 1.21724 0.92355 1.02831 1.02981 1.21613 0.98116 0.98008 0.98165 1.21714 1.01259 0.94223 1.02646 1.22356 0.72941 0.87754 0.88765 1.90516 1.40334 1.68697 1.33624 1.20410 1.09097 0.95246 0.95629 1.20942 0.95555 0.93332 0.96945 1.20588 1.04500 0.95331 0.98509 1.17827 0.93670 0.82056 0.94879 1.42694 1.69960 1.06047 1.14932 1.16026 0.79321 0.81878 0.83023 1.90969 1.48868 1.71811 1.32863 1.45449 1.66782 1.07671 1.18723 1.21627 1.01450 0.90890 0.85067 1.21905 1.00225 0.91630 1.02107 1.19037 0.97544 0.93651 0.91207 1.21226 1.41557 0.94197 0.99192 0.92583 1.25027 0.95263 0.99015 0.95136 1.69972 1.45013 1.34116 1.04050 0.86524 0.78381 0.84755 0.78249 1.19772 1.20979 1.20987 1.21014 1.02396 0.93655 0.98729 1.21057 0.93119 0.93701 0.97537 0.91816 0.91972 0.91306 0.88609 0.92439 0.91866 0.91594 0.84818 0.85053 0.75553 0.76960 0.91569 0.91591 0.92660 0.92640 0.96178 0.96186 0.92938 0.83833 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.18 37.15 0.34 -0.44 16 2 C -0.14 -0.89 2.68 -91.77 -0.25 -1.14 16 3 C -0.14 -0.89 8.79 37.16 0.33 -0.56 16 4 C 0.40 3.93 6.17 -30.83 -0.19 3.74 16 5 O -0.46 -5.89 16.15 5.55 0.09 -5.80 16 6 C -0.20 -1.97 5.87 -105.05 -0.62 -2.59 16 7 C -0.05 -0.36 9.31 -39.49 -0.37 -0.73 16 8 C -0.17 -1.33 9.90 -39.81 -0.39 -1.72 16 9 C 0.21 2.26 6.27 -83.74 -0.53 1.73 16 10 N -0.69 -6.84 5.32 -14.21 -0.08 -6.92 16 11 C 0.70 9.69 8.29 -86.91 -0.72 8.97 16 12 O -0.57 -10.27 14.02 5.30 0.07 -10.20 16 13 N -0.73 -9.51 5.56 -65.23 -0.36 -9.87 16 14 C 0.13 2.20 5.67 -4.04 -0.02 2.17 16 15 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.14 -1.69 8.58 -39.80 -0.34 -2.03 16 26 C -0.04 -0.40 9.55 -39.49 -0.38 -0.78 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.41 6.47 -51.93 -0.34 0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.50 7.86 -51.93 -0.41 0.09 16 34 H 0.13 0.58 6.35 -52.49 -0.33 0.25 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.41 2.52 8.83 -40.82 -0.36 2.16 16 37 H 0.40 3.87 8.49 -40.82 -0.35 3.52 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.14 2.02 6.41 -52.49 -0.34 1.69 16 46 H 0.13 1.53 7.64 -52.49 -0.40 1.13 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -34.15 385.96 -9.70 -43.85 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.14 Total: 1.13 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.82 Total: -8.45 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.30 Total: -42.50 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.16 Total: -15.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.15 -9.70 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455819444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.154 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds