Wall clock time and date at job start Tue Mar 31 2020 13:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47128 * 119.99550 * 2 1 3 5 5 O 1.21293 * 120.00419 * 269.72894 * 4 2 1 6 6 C 1.46836 * 119.99630 * 90.00179 * 4 2 1 7 7 C 1.40065 * 120.10134 * 359.72533 * 6 4 2 8 8 C 1.36604 * 119.89494 * 179.78557 * 7 6 4 9 9 C 1.39213 * 120.10247 * 0.49185 * 8 7 6 10 10 N 1.39296 * 119.90076 * 179.71792 * 9 8 7 11 11 C 1.34778 * 120.00191 * 213.60047 * 10 9 8 12 12 O 1.21579 * 120.00041 * 5.32188 * 11 10 9 13 13 N 1.34781 * 119.99906 * 185.31884 * 11 10 9 14 14 C 1.46505 * 119.99760 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46932 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47071 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47164 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99446 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99826 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99815 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47300 * 120.00186 * 21 19 17 24 24 H 1.48501 * 109.46965 * 240.00120 * 21 19 17 25 25 C 1.39228 * 120.20534 * 359.74099 * 9 8 7 26 26 C 1.36605 * 120.09970 * 0.02562 * 25 9 8 27 27 H 1.09003 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47761 * 299.99907 * 1 2 3 29 29 H 1.09004 * 109.47198 * 60.00510 * 1 2 3 30 30 H 1.08994 * 109.47761 * 240.00093 * 2 1 3 31 31 H 1.08993 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46750 * 300.00372 * 3 2 1 33 33 H 1.09004 * 109.46562 * 59.99355 * 3 2 1 34 34 H 1.08002 * 120.04849 * 0.02562 * 7 6 4 35 35 H 1.08001 * 119.94456 * 180.23266 * 8 7 6 36 36 H 0.96997 * 120.00282 * 33.59655 * 10 9 8 37 37 H 0.96995 * 120.00336 * 359.97438 * 13 11 10 38 38 H 1.08991 * 109.47116 * 300.00182 * 14 13 11 39 39 H 1.09000 * 109.46922 * 60.00667 * 14 13 11 40 40 H 1.09005 * 109.46958 * 300.00430 * 15 14 13 41 41 H 1.08998 * 109.47221 * 59.99869 * 15 14 13 42 42 H 1.08991 * 109.46925 * 300.00065 * 16 15 14 43 43 H 1.09000 * 109.46974 * 60.00465 * 16 15 14 44 44 H 0.97010 * 120.00173 * 180.02562 * 20 19 17 45 45 H 1.07995 * 119.95020 * 180.02562 * 25 9 8 46 46 H 1.07992 * 120.05180 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2392 -0.0857 2.2495 6 6 2.2770 -2.1577 1.1942 7 6 2.0388 -2.8811 0.0187 8 6 2.2721 -4.2267 -0.0117 9 6 2.7361 -4.8808 1.1262 10 7 2.9670 -6.2541 1.0922 11 6 2.7509 -7.0013 2.1929 12 8 2.2633 -6.4952 3.1850 13 7 3.0751 -8.3095 2.1937 14 6 2.8407 -9.1215 3.3903 15 6 3.2937 -10.5592 3.1278 16 6 3.0482 -11.4074 4.3773 17 6 3.4938 -12.8236 4.1186 18 1 3.9108 -13.0916 3.1590 19 6 3.3702 -13.7767 5.1071 20 7 2.8629 -13.4500 6.2756 21 14 3.9232 -15.5319 4.7867 22 1 4.4534 -15.6391 3.4037 23 1 4.9868 -15.9005 5.7551 24 1 2.7682 -16.4517 4.9461 25 6 2.9697 -4.1667 2.2984 26 6 2.7438 -2.8200 2.3367 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6750 -2.3751 -0.8634 35 1 2.0923 -4.7847 -0.9188 36 1 3.2833 -6.6727 0.2764 37 1 3.4637 -8.7134 1.4020 38 1 3.4066 -8.7094 4.2257 39 1 1.7779 -9.1136 3.6323 40 1 2.7280 -10.9715 2.2923 41 1 4.3564 -10.5668 2.8860 42 1 3.6135 -10.9951 5.2130 43 1 1.9853 -11.3997 4.6186 44 1 2.7762 -14.1205 6.9713 45 1 3.3300 -4.6782 3.1786 46 1 2.9248 -2.2670 3.2464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455819444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:14 Heat of formation + Delta-G solvation = -83.909066 kcal Electronic energy + Delta-G solvation = -24864.119284 eV Core-core repulsion = 21138.135083 eV Total energy + Delta-G solvation = -3725.984201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92277 -40.98574 -39.33352 -37.10173 -35.93214 -35.47721 -35.21939 -33.09005 -32.16279 -30.98275 -28.55187 -28.01274 -26.01515 -24.94011 -24.11369 -22.84531 -22.36634 -21.91730 -20.23534 -19.50455 -18.95861 -18.46003 -17.91674 -17.05996 -16.64036 -16.59504 -16.20759 -15.98457 -15.82491 -15.50237 -15.30802 -15.11088 -14.81225 -14.36905 -14.26538 -13.91115 -13.80368 -13.71395 -13.58726 -13.46364 -13.19331 -12.91808 -12.78808 -12.55483 -12.35545 -12.32624 -12.03876 -11.80057 -11.73667 -11.68844 -11.49057 -11.29714 -11.15080 -10.56120 -10.55564 -10.22017 -10.09154 -9.17015 -8.19513 -6.30927 -0.42661 0.42246 1.28838 1.42114 1.42223 1.49291 1.55536 1.98593 2.41916 2.82558 3.00658 3.11438 3.14736 3.75501 3.88974 3.91149 4.12810 4.13684 4.19732 4.21855 4.30212 4.39886 4.47606 4.54920 4.64319 4.78373 4.88877 4.91663 4.93962 4.94635 4.99616 5.08419 5.15630 5.16999 5.21246 5.29289 5.33304 5.36655 5.37693 5.47536 5.52849 5.71142 5.84517 5.87407 5.90673 6.22343 6.56838 6.86436 6.90949 7.36596 7.39042 8.92692 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047056 B = 0.001650 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.897000 B =16969.106908 C =17247.490620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C -0.142 4.142 4 C 0.401 3.599 5 O -0.501 6.501 6 C -0.210 4.210 7 C -0.033 4.033 8 C -0.151 4.151 9 C 0.197 3.803 10 N -0.668 5.668 11 C 0.696 3.304 12 O -0.616 6.616 13 N -0.719 5.719 14 C 0.148 3.852 15 C -0.100 4.100 16 C 0.021 3.979 17 C -0.540 4.540 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.257 1.257 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.160 4.160 26 C -0.055 4.055 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.430 0.570 37 H 0.417 0.583 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.070 0.930 42 H -0.008 1.008 43 H -0.007 1.007 44 H 0.262 0.738 45 H 0.113 0.887 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 25.191 -23.563 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.199 4.199 4 C 0.282 3.718 5 O -0.379 6.379 6 C -0.212 4.212 7 C -0.051 4.051 8 C -0.172 4.172 9 C 0.100 3.900 10 N -0.317 5.317 11 C 0.397 3.603 12 O -0.496 6.496 13 N -0.374 5.374 14 C 0.023 3.977 15 C -0.138 4.138 16 C -0.016 4.016 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.181 4.181 26 C -0.074 4.074 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.270 0.730 37 H 0.254 0.746 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.010 0.990 43 H 0.011 0.989 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.639 25.780 -21.961 33.906 hybrid contribution 0.579 -1.501 0.558 1.702 sum -1.060 24.280 -21.404 32.384 Atomic orbital electron populations 1.21759 0.91448 1.03331 1.03296 1.21694 0.98650 0.97750 0.97181 1.21738 1.00971 0.94400 1.02840 1.22999 0.71608 0.87757 0.89416 1.90507 1.42379 1.69467 1.35555 1.20627 1.08949 0.95670 0.95974 1.21405 0.93484 0.93143 0.97058 1.21002 1.02108 0.95551 0.98514 1.18034 0.94631 0.82061 0.95312 1.42355 1.69190 1.05633 1.14500 1.16149 0.78889 0.81964 0.83345 1.90956 1.50901 1.72699 1.34998 1.45021 1.66796 1.07289 1.18309 1.21153 1.00086 0.90367 0.86070 1.21591 1.01414 0.91464 0.99357 1.18962 0.95230 0.94193 0.93260 1.21719 1.41096 0.95319 0.99627 0.91369 1.26020 0.95343 1.03923 0.94858 1.70120 1.46500 1.35735 1.05204 0.85368 0.77844 0.78842 0.78783 1.18060 1.20736 1.20680 1.20839 1.04184 0.94109 0.98922 1.20997 0.94614 0.93595 0.98176 0.91228 0.93869 0.88842 0.85253 0.92969 0.89356 0.93691 0.80403 0.80965 0.72977 0.74616 0.93292 0.93164 0.91034 0.91176 0.98979 0.98889 0.92877 0.86927 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.18 71.98 0.66 -0.51 16 2 C -0.13 -1.35 2.68 -11.54 -0.03 -1.38 16 3 C -0.14 -1.55 8.79 71.98 0.63 -0.92 16 4 C 0.40 7.60 6.17 27.94 0.17 7.77 16 5 O -0.50 -13.69 16.15 -3.07 -0.05 -13.74 16 6 C -0.21 -3.91 5.87 -20.14 -0.12 -4.03 16 7 C -0.03 -0.36 9.31 22.33 0.21 -0.15 16 8 C -0.15 -1.77 9.90 22.12 0.22 -1.55 16 9 C 0.20 3.88 6.27 38.43 0.24 4.12 16 10 N -0.67 -12.01 5.32 -317.14 -1.69 -13.70 16 11 C 0.70 19.11 8.29 179.05 1.48 20.59 16 12 O -0.62 -23.21 14.02 -3.97 -0.06 -23.27 16 13 N -0.72 -17.87 5.56 -478.54 -2.66 -20.53 16 14 C 0.15 4.96 5.67 86.38 0.49 5.45 16 15 C -0.10 -3.66 5.27 30.59 0.16 -3.49 16 16 C 0.02 1.08 4.97 29.85 0.15 1.23 16 17 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 20 N -0.94 -56.75 13.29 21.44 0.28 -56.46 16 21 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.16 -4.15 8.58 22.13 0.19 -3.97 16 26 C -0.05 -1.34 9.55 22.33 0.21 -1.13 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.13 0.44 6.47 -2.39 -0.02 0.42 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 0.68 7.86 -2.39 -0.02 0.66 16 34 H 0.18 0.38 6.35 -2.91 -0.02 0.37 16 35 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.43 3.81 8.83 -92.71 -0.82 2.99 16 37 H 0.42 7.01 8.49 -92.71 -0.79 6.22 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 45 H 0.11 3.57 6.41 -2.91 -0.02 3.55 16 46 H 0.12 3.11 7.64 -2.91 -0.02 3.09 16 Total: -1.00 -79.93 385.96 2.61 -77.31 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.61 Total: 12.14 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.37 Total: -7.01 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -4.06 Total: -90.70 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.11 Total: -37.01 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -79.93 2.61 -77.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455819444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.597 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds