Wall clock time and date at job start Tue Mar 31 2020 12:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 O 1.42891 * 109.47486 * 239.99737 * 2 1 3 5 5 C 1.53004 * 109.46919 * 119.99543 * 2 1 3 6 6 N 1.46500 * 109.46968 * 60.00431 * 5 2 1 7 7 C 1.34773 * 120.00068 * 269.99742 * 6 5 2 8 8 O 1.21586 * 119.99789 * 182.42485 * 7 6 5 9 9 N 1.34771 * 119.99773 * 2.42934 * 7 6 5 10 10 C 1.39957 * 119.99789 * 184.28244 * 9 7 6 11 11 C 1.39288 * 119.94938 * 322.76417 * 10 9 7 12 12 C 1.38485 * 120.43078 * 179.76473 * 11 10 9 13 13 C 1.37680 * 120.32473 * 0.51490 * 12 11 10 14 14 C 1.40747 * 119.87695 * 359.74367 * 13 12 11 15 15 C 1.41413 * 120.20756 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99781 * 147.38600 * 15 14 13 17 17 C 1.39932 * 120.00031 * 327.38800 * 15 14 13 18 18 N 1.30831 * 119.99988 * 166.73253 * 17 15 14 19 19 Si 1.86802 * 119.99834 * 346.73641 * 17 15 14 20 20 H 1.48495 * 109.47087 * 88.10285 * 19 17 15 21 21 H 1.48500 * 109.46939 * 208.09641 * 19 17 15 22 22 H 1.48491 * 109.47233 * 328.09855 * 19 17 15 23 23 C 1.38239 * 119.94973 * 143.04450 * 10 9 7 24 24 C 1.46503 * 119.99922 * 89.99869 * 6 5 2 25 25 C 1.52994 * 117.49828 * 162.74707 * 24 6 5 26 26 C 1.53006 * 117.49889 * 231.40475 * 24 6 5 27 27 H 1.08994 * 109.47483 * 300.00003 * 1 2 3 28 28 H 1.08999 * 109.47347 * 60.00364 * 1 2 3 29 29 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47356 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47444 * 299.99808 * 3 2 1 32 32 H 1.09008 * 109.47179 * 59.99677 * 3 2 1 33 33 H 0.96704 * 114.00502 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47414 * 300.00497 * 5 2 1 35 35 H 1.09007 * 109.46998 * 180.02562 * 5 2 1 36 36 H 0.96997 * 120.00405 * 4.28496 * 9 7 6 37 37 H 1.08004 * 119.78414 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.84107 * 180.23801 * 12 11 10 39 39 H 1.07999 * 120.06305 * 179.76639 * 13 12 11 40 40 H 0.97001 * 120.00067 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.15771 * 359.95269 * 23 10 9 42 42 H 1.08997 * 115.55288 * 17.07520 * 24 6 5 43 43 H 1.09007 * 117.50093 * 214.99807 * 25 24 6 44 44 H 1.09001 * 117.50128 * 0.02580 * 25 24 6 45 45 H 1.09001 * 117.49531 * 359.97438 * 26 24 6 46 46 H 1.08996 * 117.49911 * 144.97140 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1666 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 0.3740 -2.4008 1.8329 8 8 -0.0103 -3.5537 1.8717 9 7 -0.3776 -1.4214 2.3733 10 6 -1.5560 -1.7404 3.0577 11 6 -2.3666 -2.7769 2.6009 12 6 -3.5322 -3.1042 3.2731 13 6 -3.9083 -2.4009 4.3954 14 6 -3.1020 -1.3475 4.8656 15 6 -3.4813 -0.6208 6.0179 16 1 -2.7252 -0.2213 6.6775 17 6 -4.8363 -0.4194 6.3035 18 7 -5.1985 0.0169 7.4825 19 14 -6.1279 -0.7738 5.0013 20 1 -6.5364 -2.1990 5.0843 21 1 -7.3112 0.0942 5.2288 22 1 -5.5631 -0.4981 3.6560 23 6 -1.9167 -1.0225 4.1826 24 6 2.3435 -3.1593 0.6150 25 6 2.0118 -4.6071 0.9818 26 6 1.6353 -4.0613 -0.3979 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 2.9704 -0.7115 -1.2330 34 1 1.6765 -0.2074 2.1393 35 1 3.1300 -0.7208 1.2496 36 1 -0.1018 -0.4953 2.2880 37 1 -2.0820 -3.3317 1.7190 38 1 -4.1516 -3.9121 2.9127 39 1 -4.8202 -2.6573 4.9142 40 1 -6.1377 0.1569 7.6804 41 1 -1.2908 -0.2161 4.5355 42 1 3.3888 -2.9147 0.4266 43 1 2.8389 -5.3151 1.0345 44 1 1.2042 -4.7734 1.6946 45 1 0.5802 -3.8685 -0.5919 46 1 2.2146 -4.4096 -1.2529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455901310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:07 Heat of formation + Delta-G solvation = -2.889456 kcal Electronic energy + Delta-G solvation = -27769.423251 eV Core-core repulsion = 24046.952323 eV Total energy + Delta-G solvation = -3722.470927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94790 -38.50557 -37.89541 -36.36631 -34.79703 -33.82024 -32.89032 -32.04253 -30.25281 -28.70024 -27.53792 -26.40870 -25.08650 -23.38421 -22.19713 -21.19695 -21.12559 -20.73759 -19.37190 -18.12163 -17.73661 -16.56015 -16.20515 -15.86864 -15.76467 -15.25943 -15.09172 -14.60492 -14.50944 -14.23337 -13.88420 -13.49264 -13.12488 -12.85510 -12.71198 -12.66181 -12.50046 -12.23824 -12.12871 -12.05477 -11.92073 -11.65323 -11.42655 -11.24042 -10.98719 -10.91757 -10.67366 -10.53701 -10.40124 -10.20499 -10.01920 -9.72480 -9.41427 -9.24149 -8.82850 -8.30999 -7.63005 -7.11870 -6.86786 -4.47159 2.42460 2.64702 2.72925 3.15992 3.24868 3.32138 3.40466 3.91373 3.95503 4.02803 4.11862 4.45202 4.51744 4.57386 4.68687 4.89924 4.95664 5.06581 5.16900 5.25868 5.32082 5.42069 5.49743 5.56126 5.64024 5.68011 5.84544 5.86404 6.03572 6.08390 6.16640 6.38654 6.42594 6.43739 6.59071 6.69546 6.78145 6.92118 6.99303 7.28674 7.40452 7.42608 7.58587 7.72587 7.89591 8.09683 8.21023 8.39541 8.65600 8.82923 8.89230 10.16479 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.003716 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.764775 B = 7533.193597 C = 8301.995948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.108 3.892 3 C -0.179 4.179 4 O -0.545 6.545 5 C 0.084 3.916 6 N -0.595 5.595 7 C 0.707 3.293 8 O -0.560 6.560 9 N -0.684 5.684 10 C 0.179 3.821 11 C -0.221 4.221 12 C -0.071 4.071 13 C -0.244 4.244 14 C 0.107 3.893 15 C -0.453 4.453 16 H 0.089 0.911 17 C 0.084 3.916 18 N -0.819 5.819 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.294 1.294 22 H -0.248 1.248 23 C -0.230 4.230 24 C 0.096 3.904 25 C -0.201 4.201 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.369 0.631 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.284 0.716 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.093 0.907 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 1.533 -14.429 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.066 3.934 3 C -0.237 4.237 4 O -0.350 6.350 5 C -0.040 4.040 6 N -0.329 5.329 7 C 0.410 3.590 8 O -0.437 6.437 9 N -0.334 5.334 10 C 0.087 3.913 11 C -0.242 4.242 12 C -0.090 4.090 13 C -0.263 4.263 14 C 0.104 3.896 15 C -0.483 4.483 16 H 0.107 0.893 17 C -0.133 4.133 18 N -0.444 5.444 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.222 1.222 22 H -0.171 1.171 23 C -0.252 4.252 24 C -0.009 4.009 25 C -0.239 4.239 26 C -0.219 4.219 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.216 0.784 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.234 0.766 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.165 0.835 45 H 0.112 0.888 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.074 0.752 -14.275 20.060 hybrid contribution 0.243 0.581 -0.315 0.704 sum 14.317 1.333 -14.589 20.484 Atomic orbital electron populations 1.21954 0.92192 1.03724 1.02537 1.21743 0.95685 0.90572 0.85389 1.22474 1.01382 0.96325 1.03495 1.86654 1.25899 1.79393 1.43072 1.22309 1.00332 0.82692 0.98674 1.46299 1.20196 1.07137 1.59264 1.15895 0.79799 0.85030 0.78262 1.90714 1.71574 1.17947 1.63460 1.43161 1.23977 1.08715 1.57524 1.17327 0.84412 0.97542 0.92019 1.20481 0.96763 1.02993 1.03968 1.20531 0.95541 0.97801 0.95090 1.21219 1.03287 1.00512 1.01298 1.17484 0.90635 0.90316 0.91202 1.19390 0.93038 1.30180 1.05667 0.89301 1.26088 0.99759 0.91878 0.95596 1.69662 1.19417 1.34851 1.20484 0.86317 0.78586 0.78079 0.82785 1.19510 1.22192 1.17113 1.20747 1.02863 1.04953 0.96631 1.21287 0.93590 0.84858 1.01138 1.24167 1.05104 0.93937 1.00643 1.23150 1.01753 1.04038 0.92911 0.91023 0.91562 0.91092 0.92180 0.91297 0.91155 0.78420 0.89751 0.89694 0.76575 0.87024 0.88496 0.87821 0.90596 0.88068 0.86138 0.89985 0.83453 0.88834 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.33 37.16 0.27 -1.39 16 2 C 0.11 0.95 1.17 -90.62 -0.11 0.84 16 3 C -0.18 -1.16 8.81 37.16 0.33 -0.84 16 4 O -0.55 -5.04 12.32 -35.23 -0.43 -5.47 16 5 C 0.08 0.76 4.70 -4.04 -0.02 0.74 16 6 N -0.59 -7.47 2.56 -171.80 -0.44 -7.91 16 7 C 0.71 11.88 6.35 -86.93 -0.55 11.33 16 8 O -0.56 -11.18 9.75 5.29 0.05 -11.13 16 9 N -0.68 -11.54 4.06 -14.27 -0.06 -11.59 16 10 C 0.18 3.81 6.25 -83.76 -0.52 3.28 16 11 C -0.22 -4.93 8.69 -39.10 -0.34 -5.27 16 12 C -0.07 -1.61 10.02 -39.69 -0.40 -2.00 16 13 C -0.24 -5.98 7.19 -38.84 -0.28 -6.26 16 14 C 0.11 2.72 5.08 -106.85 -0.54 2.18 16 15 C -0.45 -12.28 9.59 -37.74 -0.36 -12.64 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.22 5.45 -17.34 -0.09 2.13 16 18 N -0.82 -22.06 13.93 55.55 0.77 -21.28 16 19 Si 0.91 21.11 24.50 -169.99 -4.17 16.95 16 20 H -0.27 -6.06 6.44 56.52 0.36 -5.69 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.25 -5.82 6.99 56.52 0.40 -5.43 16 23 C -0.23 -5.26 9.71 -38.69 -0.38 -5.63 16 24 C 0.10 1.10 6.06 -67.93 -0.41 0.69 16 25 C -0.20 -2.66 9.64 -26.70 -0.26 -2.92 16 26 C -0.18 -2.24 9.90 -26.69 -0.26 -2.51 16 27 H 0.07 0.77 6.45 -51.93 -0.33 0.44 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.02 6.09 -51.93 -0.32 0.71 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.37 1.99 9.05 45.56 0.41 2.40 16 34 H 0.08 0.74 6.54 -51.93 -0.34 0.41 16 35 H 0.08 0.54 8.03 -51.93 -0.42 0.13 16 36 H 0.40 5.51 4.33 -40.82 -0.18 5.33 16 37 H 0.11 2.48 6.38 -52.48 -0.33 2.15 16 38 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.10 2.54 4.54 -52.49 -0.24 2.30 16 40 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.12 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.15 2.53 5.00 -53.18 -0.27 2.26 16 45 H 0.09 1.44 7.78 -51.93 -0.40 1.04 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -31.04 357.18 -8.63 -39.68 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.82 Total: 13.66 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -3.92 Total: -18.28 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.28 Total: -40.79 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.38 Total: -16.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.17 Total: 16.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.04 -8.63 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455901310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.788 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds