Wall clock time and date at job start Tue Mar 31 2020 12:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 O 1.42891 * 109.47486 * 239.99737 * 2 1 3 5 5 C 1.53004 * 109.46919 * 119.99543 * 2 1 3 6 6 N 1.46500 * 109.46968 * 60.00431 * 5 2 1 7 7 C 1.34773 * 120.00068 * 269.99742 * 6 5 2 8 8 O 1.21586 * 119.99789 * 182.42485 * 7 6 5 9 9 N 1.34771 * 119.99773 * 2.42934 * 7 6 5 10 10 C 1.39957 * 119.99789 * 184.28244 * 9 7 6 11 11 C 1.39288 * 119.94938 * 322.76417 * 10 9 7 12 12 C 1.38485 * 120.43078 * 179.76473 * 11 10 9 13 13 C 1.37680 * 120.32473 * 0.51490 * 12 11 10 14 14 C 1.40747 * 119.87695 * 359.74367 * 13 12 11 15 15 C 1.41413 * 120.20756 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99781 * 147.38600 * 15 14 13 17 17 C 1.39932 * 120.00031 * 327.38800 * 15 14 13 18 18 N 1.30831 * 119.99988 * 166.73253 * 17 15 14 19 19 Si 1.86802 * 119.99834 * 346.73641 * 17 15 14 20 20 H 1.48495 * 109.47087 * 88.10285 * 19 17 15 21 21 H 1.48500 * 109.46939 * 208.09641 * 19 17 15 22 22 H 1.48491 * 109.47233 * 328.09855 * 19 17 15 23 23 C 1.38239 * 119.94973 * 143.04450 * 10 9 7 24 24 C 1.46503 * 119.99922 * 89.99869 * 6 5 2 25 25 C 1.52994 * 117.49828 * 162.74707 * 24 6 5 26 26 C 1.53006 * 117.49889 * 231.40475 * 24 6 5 27 27 H 1.08994 * 109.47483 * 300.00003 * 1 2 3 28 28 H 1.08999 * 109.47347 * 60.00364 * 1 2 3 29 29 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47356 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47444 * 299.99808 * 3 2 1 32 32 H 1.09008 * 109.47179 * 59.99677 * 3 2 1 33 33 H 0.96704 * 114.00502 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47414 * 300.00497 * 5 2 1 35 35 H 1.09007 * 109.46998 * 180.02562 * 5 2 1 36 36 H 0.96997 * 120.00405 * 4.28496 * 9 7 6 37 37 H 1.08004 * 119.78414 * 0.02562 * 11 10 9 38 38 H 1.07998 * 119.84107 * 180.23801 * 12 11 10 39 39 H 1.07999 * 120.06305 * 179.76639 * 13 12 11 40 40 H 0.97001 * 120.00067 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.15771 * 359.95269 * 23 10 9 42 42 H 1.08997 * 115.55288 * 17.07520 * 24 6 5 43 43 H 1.09007 * 117.50093 * 214.99807 * 25 24 6 44 44 H 1.09001 * 117.50128 * 0.02580 * 25 24 6 45 45 H 1.09001 * 117.49531 * 359.97438 * 26 24 6 46 46 H 1.08996 * 117.49911 * 144.97140 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1666 5 6 2.0399 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2494 7 6 0.3740 -2.4008 1.8329 8 8 -0.0103 -3.5537 1.8717 9 7 -0.3776 -1.4214 2.3733 10 6 -1.5560 -1.7404 3.0577 11 6 -2.3666 -2.7769 2.6009 12 6 -3.5322 -3.1042 3.2731 13 6 -3.9083 -2.4009 4.3954 14 6 -3.1020 -1.3475 4.8656 15 6 -3.4813 -0.6208 6.0179 16 1 -2.7252 -0.2213 6.6775 17 6 -4.8363 -0.4194 6.3035 18 7 -5.1985 0.0169 7.4825 19 14 -6.1279 -0.7738 5.0013 20 1 -6.5364 -2.1990 5.0843 21 1 -7.3112 0.0942 5.2288 22 1 -5.5631 -0.4981 3.6560 23 6 -1.9167 -1.0225 4.1826 24 6 2.3435 -3.1593 0.6150 25 6 2.0118 -4.6071 0.9818 26 6 1.6353 -4.0613 -0.3979 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 2.9704 -0.7115 -1.2330 34 1 1.6765 -0.2074 2.1393 35 1 3.1300 -0.7208 1.2496 36 1 -0.1018 -0.4953 2.2880 37 1 -2.0820 -3.3317 1.7190 38 1 -4.1516 -3.9121 2.9127 39 1 -4.8202 -2.6573 4.9142 40 1 -6.1377 0.1569 7.6804 41 1 -1.2908 -0.2161 4.5355 42 1 3.3888 -2.9147 0.4266 43 1 2.8389 -5.3151 1.0345 44 1 1.2042 -4.7734 1.6946 45 1 0.5802 -3.8685 -0.5919 46 1 2.2146 -4.4096 -1.2529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455901310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:06 Heat of formation + Delta-G solvation = -23.548005 kcal Electronic energy + Delta-G solvation = -27770.319073 eV Core-core repulsion = 24046.952323 eV Total energy + Delta-G solvation = -3723.366749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15075 -39.83525 -39.03889 -37.66245 -36.06718 -35.42736 -34.36681 -32.83907 -32.15419 -30.34338 -28.32286 -27.24722 -26.99960 -24.64078 -23.24411 -22.83149 -22.66490 -21.66208 -20.71880 -19.54168 -19.09209 -17.86417 -17.54397 -17.29360 -16.74606 -16.52025 -16.31405 -16.07661 -15.66992 -15.58349 -15.18340 -14.85254 -14.52407 -14.40121 -14.05192 -13.88941 -13.55244 -13.40998 -13.34219 -13.02495 -12.86007 -12.82728 -12.73913 -12.56894 -12.44069 -12.37541 -12.24348 -11.80680 -11.64927 -11.60148 -11.22435 -11.12937 -11.02934 -10.92058 -10.37123 -9.52949 -9.37102 -8.85190 -8.80697 -6.51933 0.68762 0.78657 1.29552 1.41193 1.49198 1.54454 2.02810 2.15001 2.64849 2.77698 3.11794 3.33970 3.47987 3.74177 3.77761 4.01691 4.02488 4.11899 4.22259 4.28423 4.32951 4.53312 4.56501 4.60625 4.65136 4.70139 4.78344 4.85318 4.89987 4.93175 4.96168 4.99672 5.01772 5.16373 5.21705 5.33658 5.34642 5.48280 5.56310 5.68290 5.79232 5.86046 5.91784 5.99691 6.25522 6.40289 6.70693 6.83355 6.88430 7.00225 7.54947 8.23344 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.003716 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.764775 B = 7533.193597 C = 8301.995948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 C -0.172 4.172 4 O -0.563 6.563 5 C 0.076 3.924 6 N -0.586 5.586 7 C 0.699 3.301 8 O -0.596 6.596 9 N -0.676 5.676 10 C 0.191 3.809 11 C -0.220 4.220 12 C -0.073 4.073 13 C -0.258 4.258 14 C 0.091 3.909 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.050 3.950 18 N -0.856 5.856 19 Si 0.965 3.035 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.256 1.256 23 C -0.235 4.235 24 C 0.107 3.893 25 C -0.217 4.217 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.389 0.611 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.411 0.589 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.292 0.708 41 H 0.113 0.887 42 H 0.169 0.831 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.574 1.915 -16.674 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.075 3.925 3 C -0.230 4.230 4 O -0.371 6.371 5 C -0.047 4.047 6 N -0.319 5.319 7 C 0.402 3.598 8 O -0.476 6.476 9 N -0.328 5.328 10 C 0.096 3.904 11 C -0.241 4.241 12 C -0.091 4.091 13 C -0.278 4.278 14 C 0.088 3.912 15 C -0.513 4.513 16 H 0.078 0.922 17 C -0.163 4.163 18 N -0.483 5.483 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.180 1.180 23 C -0.257 4.257 24 C 0.003 3.997 25 C -0.254 4.254 26 C -0.218 4.218 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.252 0.748 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.186 0.814 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.074 0.926 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.597 1.169 -16.543 23.463 hybrid contribution -0.340 0.388 0.235 0.567 sum 16.257 1.557 -16.308 23.080 Atomic orbital electron populations 1.21951 0.94838 1.01350 1.02544 1.21581 0.93653 0.92041 0.85198 1.22410 1.02957 0.94219 1.03452 1.86624 1.27878 1.79535 1.43030 1.22678 1.02764 0.80342 0.98883 1.46384 1.18556 1.09190 1.57758 1.16156 0.80947 0.84291 0.78385 1.90736 1.72777 1.19328 1.64729 1.42997 1.22839 1.09820 1.57121 1.17300 0.85414 0.96331 0.91316 1.20687 0.96679 1.02992 1.03763 1.20822 0.95856 0.98069 0.94393 1.21276 1.03498 1.00877 1.02142 1.17626 0.91887 0.90567 0.91156 1.19383 0.93158 1.32116 1.06688 0.92239 1.26707 1.01014 0.91531 0.97085 1.69689 1.20401 1.36447 1.21751 0.85535 0.76875 0.78630 0.79983 1.18530 1.20537 1.17954 1.20884 1.02354 1.05545 0.96893 1.21752 0.95153 0.83603 0.99178 1.23986 1.04903 0.96313 1.00200 1.23067 1.00187 1.04919 0.93631 0.90902 0.91751 0.94514 0.89630 0.91864 0.90748 0.76177 0.89534 0.85583 0.74821 0.86977 0.85868 0.87979 0.89711 0.86870 0.81373 0.87586 0.87544 0.92565 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 7.33 71.98 0.53 -2.69 16 2 C 0.12 1.69 1.17 -10.79 -0.01 1.67 16 3 C -0.17 -1.60 8.81 71.98 0.63 -0.96 16 4 O -0.56 -8.45 12.32 -148.98 -1.84 -10.28 16 5 C 0.08 1.07 4.70 86.38 0.41 1.48 16 6 N -0.59 -13.33 2.56 -815.71 -2.09 -15.42 16 7 C 0.70 23.03 6.35 179.06 1.14 24.16 16 8 O -0.60 -24.10 9.75 -3.99 -0.04 -24.14 16 9 N -0.68 -22.36 4.06 -317.33 -1.29 -23.65 16 10 C 0.19 8.05 6.25 38.10 0.24 8.29 16 11 C -0.22 -9.78 8.69 22.58 0.20 -9.58 16 12 C -0.07 -3.26 10.02 22.20 0.22 -3.04 16 13 C -0.26 -12.71 7.19 22.75 0.16 -12.55 16 14 C 0.09 4.70 5.08 -21.31 -0.11 4.59 16 15 C -0.48 -27.20 9.59 23.46 0.22 -26.98 16 16 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 17 C 0.05 2.72 5.45 85.25 0.46 3.18 16 18 N -0.86 -47.34 13.93 21.82 0.30 -47.04 16 19 Si 0.97 43.71 24.50 68.60 1.68 45.39 16 20 H -0.26 -11.27 6.44 99.48 0.64 -10.63 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -11.79 6.99 99.48 0.70 -11.10 16 23 C -0.23 -10.81 9.71 22.85 0.22 -10.59 16 24 C 0.11 2.11 6.06 44.99 0.27 2.38 16 25 C -0.22 -5.43 9.64 30.62 0.30 -5.13 16 26 C -0.18 -4.18 9.90 30.62 0.30 -3.88 16 27 H 0.07 1.49 6.45 -2.39 -0.02 1.47 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.04 6.09 -2.39 -0.01 1.03 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.39 2.30 9.05 -74.05 -0.67 1.63 16 34 H 0.09 1.23 6.54 -2.39 -0.02 1.22 16 35 H 0.13 0.84 8.03 -2.38 -0.02 0.82 16 36 H 0.41 10.92 4.33 -92.71 -0.40 10.52 16 37 H 0.11 5.01 6.38 -2.91 -0.02 4.99 16 38 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.10 5.00 4.54 -2.91 -0.01 4.99 16 40 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 41 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 42 H 0.17 1.77 8.09 -2.39 -0.02 1.75 16 43 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.11 3.71 5.00 -22.27 -0.11 3.60 16 45 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 46 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.45 357.18 1.69 -69.76 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.23 Total: 35.03 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 5.19 Total: -29.64 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.08 Total: -86.11 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.87 Total: -34.42 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.68 Total: 45.39 kcal Total: -71.45 1.69 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455901310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.213 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds