Wall clock time and date at job start Tue Mar 31 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47527 * 2 1 4 4 C 1.53009 * 109.46994 * 119.99867 * 2 1 3 5 5 C 1.50696 * 109.47004 * 64.99841 * 4 2 1 6 6 O 1.21284 * 120.00002 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00043 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47471 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 O 1.21291 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00043 * 179.97438 * 10 9 8 13 13 C 1.39933 * 120.00407 * 174.89131 * 12 10 9 14 14 C 1.39291 * 119.95021 * 145.78033 * 13 12 10 15 15 C 1.38489 * 120.43276 * 179.97438 * 14 13 12 16 16 C 1.37688 * 120.31571 * 359.97438 * 15 14 13 17 17 C 1.40733 * 119.88978 * 0.02562 * 16 15 14 18 18 C 1.41406 * 120.21514 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00730 * 205.17802 * 18 17 16 20 20 C 1.39933 * 119.99929 * 25.17233 * 18 17 16 21 21 N 1.30836 * 119.99792 * 16.80043 * 20 18 17 22 22 Si 1.86799 * 120.00348 * 196.79875 * 20 18 17 23 23 H 1.48494 * 109.47136 * 90.00101 * 22 20 18 24 24 H 1.48506 * 109.47082 * 210.00446 * 22 20 18 25 25 H 1.48504 * 109.46909 * 329.99948 * 22 20 18 26 26 C 1.38242 * 119.94592 * 325.51443 * 13 12 10 27 27 H 1.09004 * 109.46835 * 300.00108 * 1 2 3 28 28 H 1.08996 * 109.46684 * 59.99919 * 1 2 3 29 29 H 1.08997 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47486 * 239.99402 * 2 1 3 31 31 H 1.08998 * 109.47379 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46834 * 300.00120 * 3 2 1 33 33 H 1.09006 * 109.47228 * 59.99306 * 3 2 1 34 34 H 1.09001 * 109.46655 * 304.99852 * 4 2 1 35 35 H 1.08991 * 109.47368 * 184.99881 * 4 2 1 36 36 H 0.97000 * 119.99818 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.47179 * 59.99380 * 8 7 5 38 38 H 1.09000 * 109.46900 * 300.00192 * 8 7 5 39 39 H 1.09000 * 109.47068 * 299.99908 * 9 8 7 40 40 H 1.09001 * 109.47373 * 59.99948 * 9 8 7 41 41 H 0.97002 * 120.00014 * 354.88958 * 12 10 9 42 42 H 1.08001 * 119.78695 * 359.97438 * 14 13 12 43 43 H 1.07994 * 119.84116 * 180.02562 * 15 14 13 44 44 H 1.08008 * 120.05718 * 179.97438 * 16 15 14 45 45 H 0.97004 * 119.99868 * 180.02562 * 21 20 18 46 46 H 1.07997 * 120.16380 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 -2.1733 1.1890 6 8 1.0108 -2.5901 0.2404 7 7 1.9843 -3.0084 2.1896 8 6 1.5972 -4.4202 2.1308 9 6 2.1060 -5.1411 3.3807 10 6 1.7072 -6.5931 3.3204 11 8 1.0784 -7.0104 2.3708 12 7 2.0502 -7.4282 4.3210 13 6 1.5899 -8.7497 4.3184 14 6 2.3944 -9.7673 4.8257 15 6 1.9486 -11.0785 4.8284 16 6 0.7038 -11.3904 4.3296 17 6 -0.1202 -10.3728 3.8138 18 6 -1.3997 -10.6854 3.2993 19 1 -1.8575 -10.0423 2.5623 20 6 -2.0729 -11.8283 3.7451 21 7 -1.6946 -12.4220 4.8479 22 14 -3.5118 -12.5065 2.7657 23 1 -3.0138 -13.4907 1.7715 24 1 -4.4671 -13.1733 3.6867 25 1 -4.1984 -11.3945 2.0605 26 6 0.3351 -9.0424 3.8173 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -0.2616 2.1370 35 1 3.1262 -0.6444 1.2953 36 1 2.4876 -2.6748 2.9488 37 1 2.0325 -4.8796 1.2433 38 1 0.5110 -4.4974 2.0841 39 1 3.1922 -5.0639 3.4278 40 1 1.6703 -4.6816 4.2679 41 1 2.6162 -7.1133 5.0431 42 1 3.3722 -9.5324 5.2194 43 1 2.5801 -11.8600 5.2245 44 1 0.3605 -12.4145 4.3335 45 1 -2.1610 -13.2145 5.1568 46 1 -0.2913 -8.2535 3.4280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456731622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:04 Heat of formation + Delta-G solvation = -99.898043 kcal Electronic energy + Delta-G solvation = -25269.768194 eV Core-core repulsion = 21543.090659 eV Total energy + Delta-G solvation = -3726.677535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36598 -40.78851 -39.05261 -36.89363 -36.24352 -35.92025 -34.84583 -32.41577 -31.76450 -30.04527 -28.79158 -27.93914 -27.27656 -25.16448 -23.05174 -22.61768 -22.04003 -21.18557 -20.65760 -19.53701 -18.33162 -17.94104 -17.48190 -17.14902 -16.81033 -16.66569 -16.47354 -16.24439 -15.63395 -15.21645 -15.07375 -14.80859 -14.71556 -14.45384 -14.39352 -13.89953 -13.54281 -13.28457 -13.08892 -13.02067 -12.94680 -12.92701 -12.79005 -12.73048 -12.46051 -12.20111 -12.04699 -11.97884 -11.73512 -11.56029 -11.53816 -11.18874 -10.92547 -10.80748 -10.62564 -10.11791 -9.41185 -8.76720 -8.62300 -6.39139 0.85437 0.98449 1.33865 1.46299 1.47119 1.68639 1.79661 1.92649 2.19007 2.53679 2.71722 3.56100 3.71475 3.80505 3.94846 4.01252 4.03881 4.07508 4.39854 4.45975 4.49534 4.62794 4.71905 4.74201 4.75073 4.82556 4.86943 4.92738 5.04541 5.06387 5.08958 5.11682 5.13643 5.23747 5.31890 5.33018 5.36591 5.50887 5.55050 5.75089 5.85155 6.06795 6.09981 6.33539 6.59213 6.65548 6.67569 6.92085 6.99693 7.32659 7.36509 8.30987 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.002195 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.077410 B =12751.704601 C =14135.988579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.126 4.126 5 C 0.500 3.500 6 O -0.587 6.587 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.127 4.127 10 C 0.499 3.501 11 O -0.574 6.574 12 N -0.655 5.655 13 C 0.157 3.843 14 C -0.248 4.248 15 C -0.092 4.092 16 C -0.198 4.198 17 C 0.086 3.914 18 C -0.504 4.504 19 H 0.059 0.941 20 C 0.038 3.962 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.259 1.259 25 H -0.267 1.267 26 C -0.238 4.238 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.422 0.578 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.425 0.575 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.290 0.710 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.918 23.381 1.755 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 C -0.198 4.198 4 C -0.165 4.165 5 C 0.289 3.711 6 O -0.467 6.467 7 N -0.369 5.369 8 C 0.013 3.987 9 C -0.166 4.166 10 C 0.288 3.712 11 O -0.452 6.452 12 N -0.301 5.301 13 C 0.063 3.937 14 C -0.269 4.269 15 C -0.111 4.111 16 C -0.218 4.218 17 C 0.083 3.917 18 C -0.533 4.533 19 H 0.078 0.922 20 C -0.177 4.177 21 N -0.447 5.447 22 Si 0.801 3.199 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.191 1.191 26 C -0.260 4.260 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.264 0.736 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.977 22.671 0.605 25.196 hybrid contribution -0.709 -0.643 -0.014 0.957 sum 10.269 22.028 0.591 24.311 Atomic orbital electron populations 1.21944 0.96010 1.01447 1.01753 1.20880 0.95668 0.96850 0.97026 1.21804 1.01578 0.93897 1.02528 1.21827 1.04747 0.88576 1.01392 1.21602 0.78205 0.89996 0.81347 1.90711 1.41587 1.79100 1.35311 1.45818 1.58108 1.08422 1.24523 1.20715 0.99197 0.81193 0.97550 1.21727 1.06224 0.88273 1.00404 1.21461 0.78768 0.89680 0.81282 1.90803 1.40996 1.78739 1.34648 1.43334 1.51587 1.09079 1.26123 1.17513 0.92145 0.84308 0.99695 1.20508 1.00627 0.91754 1.14041 1.20862 0.95328 0.96240 0.98662 1.21303 0.94705 0.98821 1.06949 1.17855 0.93130 0.91100 0.89609 1.19722 1.02239 1.08780 1.22578 0.92235 1.26674 1.01123 0.95272 0.94628 1.69853 1.39305 1.17550 1.17958 0.85244 0.77023 0.78779 0.78866 1.18465 1.18350 1.19141 1.20936 0.96848 0.95744 1.12454 0.91882 0.92979 0.94038 0.92826 0.91375 0.92716 0.91330 0.86152 0.85846 0.73936 0.93444 0.93994 0.83759 0.84411 0.73603 0.84633 0.85839 0.87883 0.89967 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.93 71.98 0.64 -2.19 16 2 C -0.09 -1.25 2.57 -10.79 -0.03 -1.28 16 3 C -0.14 -1.26 9.19 71.98 0.66 -0.60 16 4 C -0.13 -1.35 5.17 29.85 0.15 -1.20 16 5 C 0.50 10.22 7.55 87.66 0.66 10.88 16 6 O -0.59 -18.94 13.96 -3.04 -0.04 -18.99 16 7 N -0.71 -11.08 5.56 -463.06 -2.57 -13.66 16 8 C 0.14 3.29 4.96 86.38 0.43 3.72 16 9 C -0.13 -2.14 5.82 29.85 0.17 -1.97 16 10 C 0.50 16.02 7.56 87.66 0.66 16.69 16 11 O -0.57 -26.18 13.74 -3.06 -0.04 -26.22 16 12 N -0.65 -20.47 5.34 -303.66 -1.62 -22.09 16 13 C 0.16 6.89 6.25 38.10 0.24 7.13 16 14 C -0.25 -10.15 9.97 22.58 0.23 -9.93 16 15 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 16 C -0.20 -10.75 8.69 22.75 0.20 -10.55 16 17 C 0.09 5.02 5.57 -21.31 -0.12 4.90 16 18 C -0.50 -29.90 9.05 23.46 0.21 -29.69 16 19 H 0.06 3.59 7.90 -2.91 -0.02 3.57 16 20 C 0.04 2.04 5.16 85.25 0.44 2.48 16 21 N -0.82 -44.35 10.94 21.82 0.24 -44.11 16 22 Si 0.98 41.12 29.59 68.60 2.03 43.15 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 C -0.24 -12.95 8.39 22.85 0.19 -12.76 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 1.06 5.95 -2.39 -0.01 1.05 16 30 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.42 2.38 8.47 -92.71 -0.79 1.60 16 37 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.43 8.58 8.82 -92.71 -0.82 7.76 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.10 5.81 6.17 -2.91 -0.02 5.79 16 45 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 46 H 0.08 4.71 6.49 -2.91 -0.02 4.69 16 Total: -1.00 -84.90 380.93 2.35 -82.55 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.61 Total: 27.69 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.97 Total: -28.32 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.95 Total: -79.86 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -0.08 Total: -45.21 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -84.90 2.35 -82.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456731622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.348 kcal (2) G-P(sol) polarization free energy of solvation -84.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds