Wall clock time and date at job start Tue Mar 31 2020 12:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47063 * 2 1 4 4 C 1.52996 * 109.46795 * 240.00388 * 2 1 3 5 5 C 1.50696 * 109.46957 * 120.00121 * 2 1 3 6 6 O 1.21280 * 120.00277 * 0.02562 * 5 2 1 7 7 N 1.34783 * 119.99639 * 179.97438 * 5 2 1 8 8 C 1.46496 * 119.99836 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47367 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47602 * 180.02562 * 9 8 7 11 11 O 1.21286 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.39943 * 120.00142 * 174.88898 * 12 10 9 14 14 C 1.39287 * 119.94535 * 145.78087 * 13 12 10 15 15 C 1.38491 * 120.42528 * 179.97438 * 14 13 12 16 16 C 1.37679 * 120.32381 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88500 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20884 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99479 * 205.17834 * 18 17 16 20 20 C 1.39925 * 120.00126 * 25.17868 * 18 17 16 21 21 N 1.30839 * 120.00271 * 16.79548 * 20 18 17 22 22 Si 1.86799 * 120.00066 * 196.79538 * 20 18 17 23 23 H 1.48492 * 109.47286 * 94.96276 * 22 20 18 24 24 H 1.48506 * 109.47262 * 214.96375 * 22 20 18 25 25 H 1.48506 * 109.46958 * 334.95851 * 22 20 18 26 26 C 1.38246 * 119.94394 * 325.51381 * 13 12 10 27 27 H 1.09007 * 109.46833 * 300.00141 * 1 2 3 28 28 H 1.09007 * 109.47213 * 59.99371 * 1 2 3 29 29 H 1.08991 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46750 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47265 * 300.00132 * 3 2 1 32 32 H 1.09004 * 109.46895 * 60.00756 * 3 2 1 33 33 H 1.09002 * 109.47087 * 299.99763 * 4 2 1 34 34 H 1.09000 * 109.47257 * 60.00416 * 4 2 1 35 35 H 1.09006 * 109.47270 * 180.02562 * 4 2 1 36 36 H 0.96996 * 120.00111 * 0.02562 * 7 5 2 37 37 H 1.09002 * 109.47078 * 60.00595 * 8 7 5 38 38 H 1.09006 * 109.47308 * 300.00680 * 8 7 5 39 39 H 1.09006 * 109.47223 * 300.00439 * 9 8 7 40 40 H 1.09002 * 109.46775 * 60.00117 * 9 8 7 41 41 H 0.97005 * 119.99878 * 354.89041 * 12 10 9 42 42 H 1.07994 * 119.79263 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.83866 * 180.02562 * 15 14 13 44 44 H 1.07998 * 120.06026 * 180.02562 * 16 15 14 45 45 H 0.96988 * 120.00258 * 180.02562 * 21 20 18 46 46 H 1.07992 * 120.16132 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1718 2.0285 7 7 3.3574 -0.8340 1.4434 8 6 3.8458 -1.5241 2.6398 9 6 5.3757 -1.5243 2.6398 10 6 5.8781 -2.2347 3.8702 11 8 5.0900 -2.6952 4.6688 12 7 7.2031 -2.3575 4.0837 13 6 7.6705 -2.9214 5.2761 14 6 8.8325 -3.6895 5.2735 15 6 9.3042 -4.2518 6.4479 16 6 8.6292 -4.0569 7.6320 17 6 7.4537 -3.2831 7.6500 18 6 6.7548 -3.0790 8.8622 19 1 5.6972 -2.8604 8.8455 20 6 7.4332 -3.1602 10.0833 21 7 8.7397 -3.0950 10.1114 22 14 6.4738 -3.3615 11.6734 23 1 6.3953 -4.8021 12.0251 24 1 7.1609 -2.6227 12.7631 25 1 5.1025 -2.8197 11.4961 26 6 6.9812 -2.7106 6.4558 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2072 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 3.9877 -0.4654 0.8049 37 1 3.4821 -2.5517 2.6404 38 1 3.4828 -1.0097 3.5297 39 1 5.7390 -2.0384 1.7500 40 1 5.7391 -0.4966 2.6394 41 1 7.8329 -2.0550 3.4107 42 1 9.3690 -3.8476 4.3497 43 1 10.2064 -4.8453 6.4350 44 1 9.0011 -4.4970 8.5454 45 1 9.2100 -3.1517 10.9577 46 1 6.0828 -2.1113 6.4596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456736828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:07 Heat of formation + Delta-G solvation = -98.136218 kcal Electronic energy + Delta-G solvation = -25628.246723 eV Core-core repulsion = 21901.645586 eV Total energy + Delta-G solvation = -3726.601137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45324 -41.02787 -39.05815 -36.70609 -36.43117 -36.11735 -34.84823 -32.17823 -31.76510 -29.79446 -28.18521 -28.05287 -27.28550 -25.82226 -23.57637 -22.91529 -22.57397 -21.27692 -20.35527 -19.50906 -18.23286 -17.74744 -17.48186 -17.10187 -16.78168 -16.75529 -16.46616 -16.12579 -15.32248 -15.15929 -15.12862 -14.78178 -14.71939 -14.47286 -14.19562 -13.88523 -13.53940 -13.30308 -13.10214 -13.04235 -13.00613 -12.93634 -12.85424 -12.79146 -12.60962 -12.49651 -12.20100 -11.98382 -11.89670 -11.83799 -11.53941 -11.19009 -10.92495 -10.80847 -10.62637 -10.19329 -9.41241 -8.76830 -8.62421 -6.39279 0.85174 0.98268 1.33918 1.45955 1.47561 1.60277 1.79095 1.87739 2.19048 2.49186 2.71571 3.51315 3.65423 3.71173 3.86262 3.93572 3.98025 4.04444 4.28358 4.45585 4.47995 4.62816 4.71975 4.74911 4.79894 4.84332 4.88365 4.96736 4.97755 5.02802 5.04708 5.08933 5.11681 5.22800 5.23744 5.31843 5.33918 5.37091 5.37589 5.74948 5.85052 6.06734 6.09945 6.33441 6.51441 6.64581 6.67399 6.92041 6.99586 7.23795 7.35060 8.31013 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.002326 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.886902 B =12035.315625 C =13173.430110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.511 3.489 6 O -0.593 6.593 7 N -0.709 5.709 8 C 0.138 3.862 9 C -0.127 4.127 10 C 0.500 3.500 11 O -0.574 6.574 12 N -0.654 5.654 13 C 0.158 3.842 14 C -0.248 4.248 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.086 3.914 18 C -0.504 4.504 19 H 0.059 0.941 20 C 0.038 3.962 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.259 1.259 24 H -0.260 1.260 25 H -0.268 1.268 26 C -0.239 4.239 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.420 0.580 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.425 0.575 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.290 0.710 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 8.852 -24.551 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.299 3.701 6 O -0.473 6.473 7 N -0.363 5.363 8 C 0.013 3.987 9 C -0.167 4.167 10 C 0.289 3.711 11 O -0.452 6.452 12 N -0.301 5.301 13 C 0.064 3.936 14 C -0.269 4.269 15 C -0.111 4.111 16 C -0.219 4.219 17 C 0.084 3.916 18 C -0.533 4.533 19 H 0.077 0.923 20 C -0.177 4.177 21 N -0.447 5.447 22 Si 0.801 3.199 23 H -0.184 1.184 24 H -0.184 1.184 25 H -0.192 1.192 26 C -0.260 4.260 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.264 0.736 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.133 8.257 -23.310 25.256 hybrid contribution -0.049 -0.038 0.994 0.996 sum -5.182 8.220 -22.316 24.339 Atomic orbital electron populations 1.21699 0.92750 1.01885 1.02441 1.20881 0.97568 0.97550 0.92428 1.21905 1.02391 0.91931 1.03364 1.21899 1.02407 0.99839 0.95360 1.21470 0.82064 0.78747 0.87868 1.90716 1.56827 1.50583 1.49178 1.45761 1.07232 1.58346 1.24946 1.20755 0.93355 0.96941 0.87662 1.21729 0.94332 1.04437 0.96152 1.21423 0.81903 0.79349 0.88452 1.90803 1.56338 1.48950 1.49082 1.43327 1.07557 1.60904 1.18289 1.17505 0.95176 0.95989 0.84899 1.20507 1.00283 1.07418 0.98703 1.20865 0.98897 0.98981 0.92355 1.21314 0.99182 1.03722 0.97647 1.17853 0.92282 0.89016 0.92495 1.19727 0.96246 1.45555 0.91793 0.92258 1.26669 0.95841 0.91184 1.03975 1.69849 1.09457 1.35412 1.29969 0.85233 0.78872 0.79642 0.76171 1.18404 1.18367 1.19180 1.20940 1.03652 1.08516 0.92942 0.93878 0.89171 0.93734 0.90180 0.89048 0.93527 0.93349 0.89088 0.90137 0.74103 0.93314 0.93849 0.83706 0.84327 0.73584 0.84608 0.85826 0.87859 0.89963 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.76 71.98 0.56 -1.52 16 2 C -0.08 -1.10 0.87 -52.93 -0.05 -1.15 16 3 C -0.14 -1.18 8.37 71.98 0.60 -0.57 16 4 C -0.14 -1.10 8.37 71.98 0.60 -0.49 16 5 C 0.51 11.57 6.48 87.65 0.57 12.13 16 6 O -0.59 -20.64 15.98 -3.03 -0.05 -20.69 16 7 N -0.71 -12.03 5.34 -463.06 -2.47 -14.50 16 8 C 0.14 3.36 4.96 86.38 0.43 3.79 16 9 C -0.13 -2.17 5.82 29.85 0.17 -2.00 16 10 C 0.50 16.07 7.56 87.66 0.66 16.73 16 11 O -0.57 -26.22 13.73 -3.05 -0.04 -26.27 16 12 N -0.65 -20.42 5.34 -303.65 -1.62 -22.04 16 13 C 0.16 6.92 6.25 38.10 0.24 7.16 16 14 C -0.25 -10.13 9.97 22.58 0.23 -9.91 16 15 C -0.09 -4.19 10.02 22.20 0.22 -3.96 16 16 C -0.20 -10.80 8.69 22.75 0.20 -10.60 16 17 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 18 C -0.50 -29.92 9.05 23.46 0.21 -29.71 16 19 H 0.06 3.58 7.90 -2.91 -0.02 3.56 16 20 C 0.04 2.05 5.16 85.25 0.44 2.49 16 21 N -0.82 -44.37 10.94 21.82 0.24 -44.13 16 22 Si 0.98 41.13 29.59 68.60 2.03 43.16 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 C -0.24 -12.99 8.39 22.85 0.19 -12.80 16 27 H 0.04 0.84 8.10 -2.38 -0.02 0.82 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 30 H 0.08 0.37 7.56 -2.39 -0.02 0.35 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.32 7.56 -2.38 -0.02 0.31 16 36 H 0.42 3.14 7.31 -92.71 -0.68 2.46 16 37 H 0.05 1.48 8.10 -2.39 -0.02 1.47 16 38 H 0.04 1.37 8.10 -2.38 -0.02 1.35 16 39 H 0.15 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.43 8.54 8.82 -92.70 -0.82 7.73 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 45 H 0.29 13.99 8.30 -92.72 -0.77 13.22 16 46 H 0.08 4.72 6.48 -2.91 -0.02 4.70 16 Total: -1.00 -85.51 381.13 2.74 -82.77 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.50 Total: 27.16 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 5.16 Total: -25.47 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.85 Total: -80.67 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -0.09 Total: -46.95 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -85.51 2.74 -82.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456736828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.369 kcal (2) G-P(sol) polarization free energy of solvation -85.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds