Wall clock time and date at job start Tue Mar 31 2020 12:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 C 1.50706 * 109.46957 * 239.99919 * 2 1 3 5 5 H 1.07990 * 119.99744 * 240.00157 * 4 2 1 6 6 C 1.37880 * 119.99743 * 60.00241 * 4 2 1 7 7 N 1.31512 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47543 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 119.99917 * 8 6 4 11 11 H 1.48507 * 109.46978 * 239.99387 * 8 6 4 12 12 C 1.52995 * 109.46979 * 120.00204 * 2 1 3 13 13 N 1.46506 * 109.47131 * 299.99478 * 12 2 1 14 14 C 1.34773 * 119.99955 * 180.02562 * 13 12 2 15 15 O 1.21584 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99988 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00200 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47097 * 180.02562 * 17 16 14 19 19 H 1.08997 * 110.66383 * 56.79008 * 18 17 16 20 20 C 1.54707 * 110.74694 * 180.02562 * 18 17 16 21 21 C 1.51645 * 101.92201 * 143.63342 * 20 18 17 22 22 C 1.37741 * 132.17555 * 164.22111 * 21 20 18 23 23 C 1.38353 * 119.97655 * 180.54312 * 22 21 20 24 24 C 1.38283 * 119.76367 * 0.37865 * 23 22 21 25 25 C 1.37932 * 120.35368 * 359.26026 * 24 23 22 26 26 C 1.38884 * 107.03657 * 344.52428 * 21 20 18 27 27 O 1.36141 * 111.23901 * 359.06137 * 26 21 20 28 28 H 1.09002 * 109.46866 * 300.00019 * 1 2 3 29 29 H 1.08998 * 109.47232 * 59.99500 * 1 2 3 30 30 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47346 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47261 * 300.00035 * 3 2 1 33 33 H 1.08993 * 109.47347 * 59.99998 * 3 2 1 34 34 H 0.97009 * 119.99660 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46812 * 180.02562 * 12 2 1 36 36 H 1.08992 * 109.47659 * 59.99949 * 12 2 1 37 37 H 0.97003 * 119.99660 * 0.02562 * 13 12 2 38 38 H 0.96996 * 119.99717 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.46601 * 60.00611 * 17 16 14 40 40 H 1.09002 * 109.47168 * 300.00847 * 17 16 14 41 41 H 1.09000 * 110.93994 * 25.47726 * 20 18 17 42 42 H 1.08997 * 110.93800 * 261.78870 * 20 18 17 43 43 H 1.07995 * 120.01289 * 0.52807 * 22 21 20 44 44 H 1.08002 * 120.11265 * 180.09204 * 23 22 21 45 45 H 1.08007 * 119.82195 * 179.52684 * 24 23 22 46 46 H 1.08001 * 119.87625 * 180.26498 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5774 -1.4789 3.7810 16 7 1.4290 0.1449 4.7699 17 6 1.7829 -0.3557 6.1006 18 6 1.1498 0.5399 7.1673 19 1 0.0690 0.5905 7.0351 20 6 1.5058 0.0374 8.5865 21 6 1.6633 1.3386 9.3492 22 6 1.6992 1.6222 10.6966 23 6 1.8456 2.9299 11.1241 24 6 1.9474 3.9486 10.1946 25 6 1.9191 3.6661 8.8449 26 6 1.7768 2.3518 8.4062 27 8 1.7317 1.8542 7.1398 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7088 1.1613 -3.4845 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9938 0.7579 2.3564 38 1 0.8711 0.9333 4.6809 39 1 2.8668 -0.3474 6.2153 40 1 1.4131 -1.3745 6.2157 41 1 2.4398 -0.5246 8.5779 42 1 0.6959 -0.5621 9.0020 43 1 1.6130 0.8242 11.4191 44 1 1.8755 3.1546 12.1801 45 1 2.0540 4.9706 10.5273 46 1 2.0036 4.4673 8.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457746760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:38 Heat of formation + Delta-G solvation = -41.239698 kcal Electronic energy + Delta-G solvation = -25902.520657 eV Core-core repulsion = 22178.386739 eV Total energy + Delta-G solvation = -3724.133919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51169 -39.53474 -37.85883 -36.48151 -34.67415 -33.27418 -32.93655 -30.96884 -30.35499 -29.95286 -26.45548 -25.69095 -25.40432 -24.41101 -22.84753 -22.10431 -21.85522 -20.56849 -18.75162 -18.14984 -17.88621 -17.07882 -16.66025 -15.81158 -15.75748 -15.21310 -15.06723 -14.69206 -14.49326 -13.97606 -13.86615 -13.61752 -13.48711 -13.43086 -13.08994 -12.84755 -12.60552 -12.39503 -12.16366 -12.11232 -11.92448 -11.35723 -11.19985 -11.17725 -11.09302 -10.85408 -10.63667 -10.35567 -10.18801 -9.78989 -9.59960 -9.28201 -9.24636 -9.00985 -8.75274 -8.46939 -8.39496 -8.16704 -5.99854 -4.09492 0.93572 1.04092 2.78064 3.09521 3.28833 3.37170 3.37470 3.42655 3.65737 3.98764 4.17485 4.41141 4.46579 4.56346 4.68139 4.72681 4.82648 4.89607 5.04962 5.20951 5.24725 5.26978 5.33755 5.52066 5.62740 5.74159 5.97051 6.06616 6.13421 6.23804 6.27424 6.39852 6.53410 6.58903 6.82792 6.86577 6.87818 6.93937 7.06524 7.12741 7.32088 7.43924 7.59154 7.72606 8.04232 8.15528 8.40897 8.49934 8.90615 9.05506 9.56092 11.01603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.002088 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.664033 B =13407.145735 C =13898.672062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.699 3.301 15 O -0.601 6.601 16 N -0.752 5.752 17 C 0.148 3.852 18 C 0.070 3.930 19 H 0.096 0.904 20 C -0.101 4.101 21 C -0.175 4.175 22 C -0.070 4.070 23 C -0.152 4.152 24 C -0.086 4.086 25 C -0.139 4.139 26 C 0.109 3.891 27 O -0.295 6.295 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 5.001 26.149 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.399 3.601 15 O -0.480 6.480 16 N -0.410 5.410 17 C 0.023 3.977 18 C 0.013 3.987 19 H 0.113 0.887 20 C -0.139 4.139 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.170 4.170 24 C -0.104 4.104 25 C -0.158 4.158 26 C 0.064 3.936 27 O -0.209 6.209 28 H 0.025 0.975 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.231 0.769 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.705 4.257 25.835 26.239 hybrid contribution -0.246 0.237 -0.831 0.899 sum -1.951 4.494 25.004 25.480 Atomic orbital electron populations 1.21816 0.97777 0.99131 1.00000 1.18378 0.92811 0.92810 0.90586 1.21818 0.98596 0.98344 1.00013 1.21026 1.31282 1.12034 0.89835 0.92346 1.24890 0.94921 0.94963 0.98872 1.69821 1.36787 1.22825 1.23058 0.86513 0.78608 0.79756 0.82984 1.19748 1.21104 1.21103 1.21589 0.97901 0.95395 0.82380 1.45497 1.55545 1.33018 1.04547 1.16026 0.80481 0.82950 0.80668 1.90882 1.43087 1.27915 1.86126 1.44984 1.57893 1.33558 1.04517 1.21213 1.00704 0.96123 0.79681 1.23690 0.98382 0.81112 0.95486 0.88669 1.21757 1.04082 0.95673 0.92388 1.20781 1.07648 0.94794 0.94406 1.20316 0.98127 0.96928 0.93465 1.21040 1.03763 0.92454 0.99743 1.20896 0.98059 0.99628 0.91776 1.20320 1.06052 0.93207 0.96201 1.19617 0.96297 0.93779 0.83923 1.86930 1.77456 1.31777 1.24710 0.97550 0.89657 0.95464 0.95449 0.89666 0.97510 0.93108 0.92952 0.92938 0.77141 0.76937 0.90672 0.89557 0.88475 0.88563 0.85780 0.85519 0.85169 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.05 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 13 N -0.73 -13.47 4.96 -65.23 -0.32 -13.79 16 14 C 0.70 12.69 8.57 -86.92 -0.74 11.94 16 15 O -0.60 -13.19 16.34 5.29 0.09 -13.10 16 16 N -0.75 -10.12 5.55 -65.23 -0.36 -10.48 16 17 C 0.15 1.66 5.35 -4.04 -0.02 1.63 16 18 C 0.07 0.63 3.66 -25.83 -0.09 0.53 16 19 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.10 -0.76 6.65 -26.52 -0.18 -0.94 16 21 C -0.18 -1.59 6.27 -104.10 -0.65 -2.24 16 22 C -0.07 -0.53 10.03 -39.72 -0.40 -0.93 16 23 C -0.15 -1.06 10.07 -39.52 -0.40 -1.46 16 24 C -0.09 -0.63 10.01 -39.68 -0.40 -1.03 16 25 C -0.14 -1.28 10.06 -39.31 -0.40 -1.68 16 26 C 0.11 1.16 7.04 -38.95 -0.27 0.88 16 27 O -0.29 -3.38 10.80 -20.19 -0.22 -3.59 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 6.53 6.18 -40.82 -0.25 6.28 16 38 H 0.40 4.52 8.49 -40.82 -0.35 4.17 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 0.69 7.92 -51.93 -0.41 0.28 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -31.16 371.76 -10.10 -41.26 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.97 Total: 7.57 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.42 Total: -6.09 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.17 Total: -47.53 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.13 Total: -16.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.16 -10.10 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457746760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.024 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds