Wall clock time and date at job start Tue Mar 31 2020 12:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 C 1.50706 * 109.46957 * 239.99919 * 2 1 3 5 5 H 1.07990 * 119.99744 * 240.00157 * 4 2 1 6 6 C 1.37880 * 119.99743 * 60.00241 * 4 2 1 7 7 N 1.31512 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47543 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47358 * 119.99917 * 8 6 4 11 11 H 1.48507 * 109.46978 * 239.99387 * 8 6 4 12 12 C 1.52995 * 109.46979 * 120.00204 * 2 1 3 13 13 N 1.46506 * 109.47131 * 299.99478 * 12 2 1 14 14 C 1.34773 * 119.99955 * 180.02562 * 13 12 2 15 15 O 1.21584 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99988 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00200 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47097 * 180.02562 * 17 16 14 19 19 H 1.08997 * 110.66383 * 56.79008 * 18 17 16 20 20 C 1.54707 * 110.74694 * 180.02562 * 18 17 16 21 21 C 1.51645 * 101.92201 * 143.63342 * 20 18 17 22 22 C 1.37741 * 132.17555 * 164.22111 * 21 20 18 23 23 C 1.38353 * 119.97655 * 180.54312 * 22 21 20 24 24 C 1.38283 * 119.76367 * 0.37865 * 23 22 21 25 25 C 1.37932 * 120.35368 * 359.26026 * 24 23 22 26 26 C 1.38884 * 107.03657 * 344.52428 * 21 20 18 27 27 O 1.36141 * 111.23901 * 359.06137 * 26 21 20 28 28 H 1.09002 * 109.46866 * 300.00019 * 1 2 3 29 29 H 1.08998 * 109.47232 * 59.99500 * 1 2 3 30 30 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47346 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47261 * 300.00035 * 3 2 1 33 33 H 1.08993 * 109.47347 * 59.99998 * 3 2 1 34 34 H 0.97009 * 119.99660 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46812 * 180.02562 * 12 2 1 36 36 H 1.08992 * 109.47659 * 59.99949 * 12 2 1 37 37 H 0.97003 * 119.99660 * 0.02562 * 13 12 2 38 38 H 0.96996 * 119.99717 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.46601 * 60.00611 * 17 16 14 40 40 H 1.09002 * 109.47168 * 300.00847 * 17 16 14 41 41 H 1.09000 * 110.93994 * 25.47726 * 20 18 17 42 42 H 1.08997 * 110.93800 * 261.78870 * 20 18 17 43 43 H 1.07995 * 120.01289 * 0.52807 * 22 21 20 44 44 H 1.08002 * 120.11265 * 180.09204 * 23 22 21 45 45 H 1.08007 * 119.82195 * 179.52684 * 24 23 22 46 46 H 1.08001 * 119.87625 * 180.26498 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5774 -1.4789 3.7810 16 7 1.4290 0.1449 4.7699 17 6 1.7829 -0.3557 6.1006 18 6 1.1498 0.5399 7.1673 19 1 0.0690 0.5905 7.0351 20 6 1.5058 0.0374 8.5865 21 6 1.6633 1.3386 9.3492 22 6 1.6992 1.6222 10.6966 23 6 1.8456 2.9299 11.1241 24 6 1.9474 3.9486 10.1946 25 6 1.9191 3.6661 8.8449 26 6 1.7768 2.3518 8.4062 27 8 1.7317 1.8542 7.1398 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7088 1.1613 -3.4845 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9938 0.7579 2.3564 38 1 0.8711 0.9333 4.6809 39 1 2.8668 -0.3474 6.2153 40 1 1.4131 -1.3745 6.2157 41 1 2.4398 -0.5246 8.5779 42 1 0.6959 -0.5621 9.0020 43 1 1.6130 0.8242 11.4191 44 1 1.8755 3.1546 12.1801 45 1 2.0540 4.9706 10.5273 46 1 2.0036 4.4673 8.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457746760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:38 Heat of formation + Delta-G solvation = -60.312159 kcal Electronic energy + Delta-G solvation = -25903.347701 eV Core-core repulsion = 22178.386739 eV Total energy + Delta-G solvation = -3724.960963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19281 -40.97540 -38.58301 -38.16304 -35.85564 -34.98849 -33.71338 -32.69654 -30.96615 -30.87453 -27.64936 -27.55502 -27.21823 -25.92819 -23.51172 -22.78914 -22.56369 -21.96570 -20.58403 -19.56143 -18.55328 -17.79539 -17.72480 -17.64281 -16.66291 -16.56305 -16.51055 -16.10474 -15.27827 -15.21019 -15.10352 -14.83730 -14.64395 -14.47124 -14.07230 -14.00217 -13.96956 -13.58278 -13.28458 -13.16644 -13.09916 -12.72957 -12.68212 -12.57372 -12.53574 -12.24511 -12.13273 -11.84798 -11.69702 -11.47656 -11.39946 -11.14162 -10.68962 -10.41688 -10.32848 -9.82848 -9.68012 -9.10722 -8.01619 -6.16997 0.34986 0.42954 1.41842 1.45782 1.55319 1.73479 2.16592 2.22823 2.46860 2.77548 3.21936 3.30603 3.35113 3.63650 3.82945 3.95688 4.03203 4.22659 4.32724 4.42621 4.48287 4.54498 4.57061 4.62671 4.66838 4.72359 4.85365 4.91147 5.00645 5.07007 5.11553 5.13091 5.21154 5.38531 5.40091 5.43025 5.48092 5.57563 5.62985 5.67960 5.68447 5.71777 6.03436 6.15698 6.22776 6.23759 6.44564 6.87423 7.12948 7.50495 7.61308 8.97571 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.002088 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.664033 B =13407.145735 C =13898.672062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.734 5.734 17 C 0.147 3.853 18 C 0.075 3.925 19 H 0.112 0.888 20 C -0.096 4.096 21 C -0.185 4.185 22 C -0.077 4.077 23 C -0.151 4.151 24 C -0.089 4.089 25 C -0.157 4.157 26 C 0.076 3.924 27 O -0.319 6.319 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.405 0.595 38 H 0.410 0.590 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 5.451 28.347 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.564 4.564 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.398 3.602 15 O -0.523 6.523 16 N -0.391 5.391 17 C 0.023 3.977 18 C 0.019 3.981 19 H 0.130 0.870 20 C -0.134 4.134 21 C -0.186 4.186 22 C -0.094 4.094 23 C -0.168 4.168 24 C -0.107 4.107 25 C -0.176 4.176 26 C 0.031 3.969 27 O -0.234 6.234 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.241 0.759 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.500 4.750 28.072 28.581 hybrid contribution 0.006 0.148 -1.411 1.418 sum -2.494 4.898 26.661 27.222 Atomic orbital electron populations 1.21653 0.96992 0.98716 1.00325 1.18377 0.93376 0.92976 0.90289 1.21664 0.97864 0.97953 1.00293 1.21290 1.31554 1.12100 0.91477 0.93670 1.25473 0.95210 0.95656 1.01026 1.69921 1.37059 1.23340 1.23512 0.85684 0.78104 0.78708 0.80165 1.19978 1.20688 1.20807 1.21133 0.96648 0.94756 0.83159 1.45207 1.55782 1.33195 1.03930 1.16141 0.80163 0.82661 0.81280 1.90856 1.44889 1.29814 1.86722 1.44862 1.56835 1.33247 1.04147 1.21355 1.00079 0.97316 0.78969 1.23697 0.98769 0.80176 0.95494 0.87046 1.21784 1.05079 0.95403 0.91107 1.21032 1.07745 0.94921 0.94932 1.20678 0.97431 0.98009 0.93325 1.21444 1.02224 0.92105 1.01070 1.21233 0.97252 1.01126 0.91077 1.20575 1.06674 0.93032 0.97284 1.19929 0.98226 0.94789 0.83934 1.86873 1.78169 1.32691 1.25710 0.94513 0.91916 0.96194 0.96426 0.91864 0.94617 0.93058 0.94766 0.94390 0.75854 0.75433 0.92261 0.88573 0.88351 0.86108 0.83512 0.82865 0.82860 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 4 C -0.53 -28.15 8.01 25.60 0.21 -27.94 16 5 H 0.04 2.48 7.74 -2.92 -0.02 2.45 16 6 C 0.03 1.38 5.15 84.66 0.44 1.82 16 7 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 8 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 C 0.17 7.36 4.50 86.38 0.39 7.75 16 13 N -0.73 -26.10 4.96 -478.54 -2.37 -28.47 16 14 C 0.70 24.90 8.57 179.06 1.53 26.44 16 15 O -0.64 -28.22 16.34 -3.98 -0.07 -28.28 16 16 N -0.73 -18.89 5.55 -478.54 -2.65 -21.54 16 17 C 0.15 3.15 5.35 86.38 0.46 3.61 16 18 C 0.07 1.24 3.66 31.18 0.11 1.36 16 19 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.10 -1.27 6.65 30.73 0.20 -1.07 16 21 C -0.19 -3.07 6.27 -19.53 -0.12 -3.19 16 22 C -0.08 -0.98 10.03 22.18 0.22 -0.76 16 23 C -0.15 -1.71 10.07 22.31 0.22 -1.48 16 24 C -0.09 -1.16 10.01 22.21 0.22 -0.93 16 25 C -0.16 -2.80 10.06 22.45 0.23 -2.58 16 26 C 0.08 1.56 7.04 22.68 0.16 1.72 16 27 O -0.32 -7.17 10.80 -95.16 -1.03 -8.20 16 28 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 33 H 0.03 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.41 8.31 -92.70 -0.77 12.64 16 35 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.40 12.66 6.18 -92.71 -0.57 12.09 16 38 H 0.41 8.61 8.49 -92.71 -0.79 7.82 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.10 1.26 7.92 -2.39 -0.02 1.24 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -67.70 371.76 1.16 -66.55 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.36 Total: 25.53 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.41 Total: -2.52 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -4.83 Total: -98.16 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.09 Total: -36.49 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.70 1.16 -66.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457746760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.235 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds