Wall clock time and date at job start Tue Mar 31 2020 12:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47457 * 2 1 4 4 C 1.50704 * 109.46849 * 239.99940 * 2 1 3 5 5 H 1.08003 * 119.99915 * 241.34839 * 4 2 1 6 6 C 1.37872 * 120.00165 * 61.34762 * 4 2 1 7 7 N 1.31514 * 119.99986 * 193.97393 * 6 4 2 8 8 Si 1.86798 * 119.99767 * 13.97760 * 6 4 2 9 9 H 1.48503 * 109.47027 * 84.54764 * 8 6 4 10 10 H 1.48496 * 109.47252 * 204.54564 * 8 6 4 11 11 H 1.48493 * 109.47393 * 324.54862 * 8 6 4 12 12 C 1.53007 * 109.47071 * 120.00424 * 2 1 3 13 13 N 1.46504 * 109.46719 * 299.99241 * 12 2 1 14 14 C 1.34774 * 119.99810 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00339 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99664 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99429 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.69536 * 325.54431 * 17 16 14 19 19 C 1.53402 * 109.73016 * 86.12299 * 17 16 14 20 20 O 1.42831 * 108.37816 * 184.40365 * 19 17 16 21 21 C 1.35849 * 117.77734 * 310.48799 * 20 19 17 22 22 C 1.39144 * 118.49588 * 196.82863 * 21 20 19 23 23 C 1.37966 * 120.21365 * 180.72419 * 22 21 20 24 24 C 1.38284 * 119.95998 * 0.26512 * 23 22 21 25 25 C 1.38102 * 119.98514 * 359.89102 * 24 23 22 26 26 C 1.38372 * 121.79755 * 17.94738 * 21 20 19 27 27 C 1.50761 * 121.40522 * 358.75559 * 26 21 20 28 28 H 1.09002 * 109.46465 * 309.36750 * 1 2 3 29 29 H 1.08993 * 109.46727 * 69.36225 * 1 2 3 30 30 H 1.09000 * 109.46962 * 189.37022 * 1 2 3 31 31 H 1.09007 * 109.46999 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47048 * 299.99804 * 3 2 1 33 33 H 1.08999 * 109.47291 * 60.00247 * 3 2 1 34 34 H 0.97005 * 119.99965 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47364 * 179.97438 * 12 2 1 36 36 H 1.08991 * 109.47433 * 59.99114 * 12 2 1 37 37 H 0.97002 * 119.99826 * 0.02562 * 13 12 2 38 38 H 0.96996 * 120.00606 * 0.02562 * 16 14 13 39 39 H 1.08996 * 109.68534 * 304.13052 * 19 17 16 40 40 H 1.09008 * 109.68030 * 64.68835 * 19 17 16 41 41 H 1.08007 * 119.88883 * 1.00145 * 22 21 20 42 42 H 1.08001 * 120.01901 * 180.23618 * 23 22 21 43 43 H 1.08000 * 120.00823 * 179.91788 * 24 23 22 44 44 H 1.08001 * 119.84339 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.43773 * 138.23678 * 27 26 21 46 46 H 1.09002 * 109.43640 * 258.10229 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1316 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9727 -3.5459 8 14 1.0276 1.5006 -2.6684 9 1 2.1418 2.4815 -2.7083 10 1 0.2471 1.5865 -3.9287 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7214 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5759 -1.4801 3.7811 16 7 1.4273 0.1437 4.7699 17 6 1.7813 -0.3569 6.1005 18 1 1.8400 -1.4451 6.0800 19 6 3.1337 0.2259 6.5303 20 8 3.4990 -0.3588 7.7811 21 6 2.5713 -0.3619 8.7736 22 6 2.9962 -0.5895 10.0788 23 6 2.0823 -0.6150 11.1120 24 6 0.7386 -0.4193 10.8504 25 6 0.3128 -0.1964 9.5557 26 6 1.2258 -0.1686 8.5145 27 6 0.7234 0.0834 7.1156 28 1 -0.3632 0.6519 0.7945 29 1 -0.3632 0.3622 -0.9617 30 1 -0.3633 -1.0140 0.1673 31 1 3.1302 1.4423 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6973 -0.6302 -4.4268 35 1 3.1300 -0.7218 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9939 0.7579 2.3564 38 1 0.8695 0.9322 4.6810 39 1 3.8894 -0.0087 5.7807 40 1 3.0490 1.3070 6.6412 41 1 4.0455 -0.7422 10.2843 42 1 2.4160 -0.7881 12.1245 43 1 0.0223 -0.4405 11.6584 44 1 -0.7371 -0.0434 9.3541 45 1 -0.1937 -0.4824 6.9521 46 1 0.5201 1.1468 6.9893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457840048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:10 Heat of formation + Delta-G solvation = -30.089472 kcal Electronic energy + Delta-G solvation = -26422.141335 eV Core-core repulsion = 22698.490926 eV Total energy + Delta-G solvation = -3723.650408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10609 -39.71310 -37.79788 -36.96003 -35.51958 -33.43551 -32.69619 -31.48385 -30.59485 -29.59952 -26.43081 -26.10452 -25.89825 -24.88712 -23.51337 -22.75125 -20.78036 -20.48021 -19.24253 -18.20537 -18.11087 -17.07016 -16.25310 -16.07526 -15.79060 -15.46527 -15.21441 -14.89545 -14.68438 -14.29158 -14.11716 -13.98353 -13.57411 -13.37782 -13.28762 -13.25274 -12.92940 -12.62883 -12.24248 -12.13219 -12.07134 -11.80359 -11.68511 -11.35040 -11.07155 -10.95246 -10.45477 -10.33883 -10.19674 -10.09295 -9.93408 -9.24759 -9.15656 -9.12171 -8.71323 -8.53647 -8.46524 -8.37891 -6.16320 -4.13667 0.98069 1.12507 2.67598 3.15899 3.21758 3.28566 3.36722 3.40142 3.44847 4.23433 4.32484 4.33455 4.39630 4.56004 4.61253 4.79415 4.82803 5.01870 5.10849 5.14178 5.18065 5.29046 5.39500 5.56188 5.67940 5.69942 5.75714 5.97516 6.01678 6.05028 6.12414 6.20404 6.31565 6.33037 6.40809 6.49670 6.51269 6.59162 6.67739 6.78011 6.93439 7.09495 7.19503 7.21176 7.40845 7.70627 8.22075 8.44362 8.82369 8.89676 9.47298 10.96712 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.037984 B = 0.002306 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.968209 B =12137.357780 C =12371.663638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.250 1.250 12 C 0.160 3.840 13 N -0.735 5.735 14 C 0.699 3.301 15 O -0.590 6.590 16 N -0.745 5.745 17 C 0.133 3.867 18 H 0.103 0.897 19 C 0.052 3.948 20 O -0.308 6.308 21 C 0.133 3.867 22 C -0.149 4.149 23 C -0.088 4.088 24 C -0.155 4.155 25 C -0.082 4.082 26 C -0.157 4.157 27 C -0.084 4.084 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.392 0.608 38 H 0.396 0.604 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 6.453 26.952 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.037 3.963 13 N -0.390 5.390 14 C 0.398 3.602 15 O -0.468 6.468 16 N -0.403 5.403 17 C 0.026 3.974 18 H 0.121 0.879 19 C -0.025 4.025 20 O -0.221 6.221 21 C 0.087 3.913 22 C -0.168 4.168 23 C -0.106 4.106 24 C -0.173 4.173 25 C -0.100 4.100 26 C -0.158 4.158 27 C -0.122 4.122 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.108 0.892 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.362 5.399 26.795 27.539 hybrid contribution -1.047 1.843 -0.527 2.184 sum -4.409 7.242 26.268 27.602 Atomic orbital electron populations 1.22288 0.97863 0.99823 0.99872 1.18736 0.92509 0.92274 0.93777 1.22351 1.01219 0.98309 0.98468 1.20706 1.34072 1.12336 0.87928 0.90488 1.24980 0.94715 0.97308 0.95808 1.69952 1.48122 1.35888 0.98722 0.87283 0.79292 0.85567 0.75948 1.21389 1.23429 1.17588 1.21406 0.98428 0.95482 0.80988 1.45509 1.55730 1.33055 1.04693 1.16044 0.80569 0.82954 0.80600 1.90933 1.42637 1.27358 1.85863 1.45022 1.57599 1.33480 1.04164 1.21264 0.93584 1.01145 0.81371 0.87865 1.23487 0.98525 0.97055 0.83426 1.86084 1.38634 1.76302 1.21072 1.18813 0.87546 0.96471 0.88445 1.20626 1.00800 1.05649 0.89702 1.20945 0.92937 0.98104 0.98587 1.21012 0.96006 1.03604 0.96679 1.20890 0.99019 0.98088 0.92028 1.19700 0.92451 1.07863 0.95813 1.20747 0.98919 1.02529 0.89993 0.96043 0.92562 0.93387 0.92770 0.94090 0.95263 0.92551 0.92085 0.92003 0.77331 0.77023 0.86682 0.91685 0.85146 0.85435 0.85862 0.85739 0.89176 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -2.89 7.52 37.15 0.28 -2.61 16 4 C -0.51 -13.60 8.62 -34.44 -0.30 -13.90 16 5 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 6 C 0.07 2.05 5.32 -17.82 -0.09 1.96 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 8 Si 0.89 20.83 22.79 -169.99 -3.87 16.96 16 9 H -0.29 -6.71 7.10 56.52 0.40 -6.31 16 10 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.25 -5.30 4.65 56.52 0.26 -5.04 16 12 C 0.16 3.14 4.49 -4.04 -0.02 3.13 16 13 N -0.74 -11.52 5.01 -65.22 -0.33 -11.85 16 14 C 0.70 11.01 8.55 -86.92 -0.74 10.27 16 15 O -0.59 -11.88 16.00 5.29 0.08 -11.79 16 16 N -0.74 -8.21 5.10 -58.43 -0.30 -8.51 16 17 C 0.13 1.44 2.69 -67.68 -0.18 1.26 16 18 H 0.10 1.41 7.57 -51.93 -0.39 1.01 16 19 C 0.05 0.57 6.63 37.37 0.25 0.82 16 20 O -0.31 -3.76 10.27 -19.27 -0.20 -3.96 16 21 C 0.13 1.45 6.47 -39.20 -0.25 1.19 16 22 C -0.15 -1.41 9.94 -39.35 -0.39 -1.80 16 23 C -0.09 -0.68 10.04 -39.66 -0.40 -1.07 16 24 C -0.15 -1.15 10.04 -39.61 -0.40 -1.55 16 25 C -0.08 -0.66 9.67 -39.53 -0.38 -1.04 16 26 C -0.16 -1.49 5.75 -104.44 -0.60 -2.09 16 27 C -0.08 -0.69 5.36 -27.81 -0.15 -0.84 16 28 H 0.02 0.35 7.13 -51.93 -0.37 -0.03 16 29 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 30 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.86 2.25 -51.93 -0.12 0.74 16 33 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.39 5.19 6.27 -40.82 -0.26 4.93 16 38 H 0.40 3.14 8.59 -40.82 -0.35 2.79 16 39 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -32.19 357.68 -8.46 -40.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.83 Total: 7.04 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.18 Total: -8.27 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.15 Total: -46.02 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.11 Total: -15.75 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -3.87 Total: 16.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.19 -8.46 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457840048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.559 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds